Wall clock time and date at job start Fri Apr 10 2020 18:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00361 * 2 1 4 4 H 1.48498 * 109.47393 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47531 * 300.00646 * 3 2 1 6 6 H 1.48504 * 109.46737 * 60.00280 * 3 2 1 7 7 C 1.38808 * 119.99527 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99990 * 200.75059 * 7 2 1 9 9 N 1.36942 * 120.00492 * 20.75285 * 7 2 1 10 10 C 1.46495 * 119.99771 * 37.71378 * 9 7 2 11 11 N 1.46497 * 109.46983 * 90.00180 * 10 9 7 12 12 C 1.47256 * 125.58258 * 269.96954 * 11 10 9 13 13 C 1.53559 * 103.52620 * 180.02562 * 12 11 10 14 14 C 1.52585 * 110.42049 * 240.55446 * 13 12 11 15 15 N 1.47158 * 108.93329 * 238.16019 * 14 13 12 16 16 C 1.46910 * 110.92038 * 298.16116 * 15 14 13 17 17 C 1.53133 * 109.56239 * 62.36186 * 16 15 14 18 18 C 1.52905 * 110.25039 * 119.15137 * 13 12 11 19 19 C 1.53551 * 108.46876 * 63.20277 * 18 13 12 20 20 C 1.46937 * 110.88927 * 62.00087 * 15 14 13 21 21 O 1.45063 * 104.60269 * 0.02562 * 13 12 11 22 22 C 1.33979 * 109.22456 * 359.97438 * 21 13 12 23 23 O 1.21514 * 123.09910 * 179.97438 * 22 21 13 24 24 C 1.46497 * 120.00103 * 217.72155 * 9 7 2 25 25 C 1.52995 * 117.50016 * 14.26607 * 24 9 7 26 26 C 1.53006 * 117.49564 * 305.60699 * 24 9 7 27 27 H 0.97002 * 119.99626 * 354.92677 * 1 2 3 28 28 H 1.09001 * 109.47260 * 330.00477 * 10 9 7 29 29 H 1.08994 * 109.47382 * 210.00349 * 10 9 7 30 30 H 1.08997 * 110.60641 * 61.53262 * 12 11 10 31 31 H 1.09003 * 110.60968 * 298.54899 * 12 11 10 32 32 H 1.09003 * 109.56210 * 118.32234 * 14 13 12 33 33 H 1.09000 * 109.56031 * 357.99109 * 14 13 12 34 34 H 1.08998 * 109.45850 * 182.38609 * 16 15 14 35 35 H 1.09002 * 109.45450 * 302.34156 * 16 15 14 36 36 H 1.08999 * 109.57904 * 119.21888 * 17 16 15 37 37 H 1.08999 * 109.57672 * 239.62210 * 17 16 15 38 38 H 1.09002 * 110.25834 * 302.38419 * 18 13 12 39 39 H 1.08998 * 109.57704 * 298.45282 * 19 18 13 40 40 H 1.08995 * 109.57514 * 178.05207 * 19 18 13 41 41 H 1.08995 * 109.45306 * 57.81499 * 20 15 14 42 42 H 1.08997 * 109.45435 * 177.77764 * 20 15 14 43 43 H 1.08994 * 115.55272 * 159.94126 * 24 9 7 44 44 H 1.09004 * 117.50121 * 0.02562 * 25 24 9 45 45 H 1.09002 * 117.49974 * 145.02267 * 25 24 9 46 46 H 1.08992 * 117.50025 * 214.97621 * 26 24 9 47 47 H 1.09004 * 117.49810 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0377 -1.2327 0.3309 9 7 1.3921 -2.3495 -0.4213 10 6 0.4587 -2.3071 -1.5496 11 7 1.1909 -2.5352 -2.7978 12 6 1.8022 -1.4901 -3.6359 13 6 2.4248 -2.2792 -4.7968 14 6 3.9340 -2.0591 -4.8412 15 7 4.2971 -1.5036 -6.1546 16 6 3.9547 -2.4404 -7.2333 17 6 2.4406 -2.6684 -7.2529 18 6 1.8013 -1.8475 -6.1246 19 6 2.1344 -0.3671 -6.3599 20 6 3.6562 -0.1986 -6.3669 21 8 2.1100 -3.6653 -4.5072 22 6 1.4132 -3.7301 -3.3647 23 8 1.0184 -4.7751 -2.8866 24 6 1.6642 -3.6191 0.2571 25 6 2.3692 -3.5584 1.6135 26 6 3.1255 -4.0558 0.3791 27 1 -0.4850 0.8368 0.0743 28 1 -0.0244 -1.3307 -1.5850 29 1 -0.2974 -3.0822 -1.4250 30 1 2.5717 -0.9542 -3.0802 31 1 1.0426 -0.8004 -4.0041 32 1 4.4460 -3.0100 -4.6929 33 1 4.2242 -1.3603 -4.0566 34 1 4.2716 -2.0245 -8.1896 35 1 4.4626 -3.3900 -7.0643 36 1 2.0354 -2.3478 -8.2127 37 1 2.2286 -3.7266 -7.0997 38 1 0.7211 -1.9917 -6.0989 39 1 1.7038 0.2357 -5.5605 40 1 1.7273 -0.0493 -7.3197 41 1 3.9494 0.4839 -5.5692 42 1 3.9716 0.2088 -7.3274 43 1 0.9163 -4.3988 0.1131 44 1 2.6303 -2.5738 2.0015 45 1 2.0854 -4.2984 2.3618 46 1 3.3388 -5.1228 0.3158 47 1 3.8843 -3.3987 -0.0457 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495856522.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:45 Heat of formation + Delta-G solvation = -2.681870 kcal Electronic energy + Delta-G solvation = -29839.642195 eV Core-core repulsion = 26024.442880 eV Total energy + Delta-G solvation = -3815.199315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.88731 -39.60782 -37.13866 -36.26924 -34.74351 -33.09576 -32.35166 -31.32305 -30.77240 -30.13167 -26.45477 -24.96953 -23.70897 -23.41945 -23.09962 -22.17796 -21.36467 -20.44444 -19.91864 -17.96015 -17.09169 -17.04069 -16.44462 -16.31686 -15.84967 -15.51054 -15.27408 -14.71074 -14.48012 -13.96658 -13.78210 -13.59884 -13.28029 -13.10915 -12.92300 -12.90762 -12.52641 -12.38559 -12.13702 -12.00947 -11.75794 -11.73098 -11.38825 -11.10018 -10.98383 -10.91381 -10.80203 -10.66749 -10.59393 -10.36970 -10.17286 -10.14587 -9.83363 -9.75108 -9.38414 -8.67087 -8.42666 -8.15438 -6.79358 -6.12738 -3.65397 3.11008 3.21640 3.27164 3.29005 3.43793 3.81165 3.91252 4.23037 4.34450 4.37833 4.62996 4.83193 4.89880 4.90714 4.97263 5.02798 5.08240 5.16087 5.21093 5.25536 5.32779 5.56533 5.62740 5.69278 5.76255 5.79638 5.85375 5.90719 5.94440 5.99292 6.02178 6.05291 6.10418 6.15216 6.21128 6.50592 6.55797 6.63986 6.86171 6.91475 6.96761 7.02223 7.14484 7.40403 7.61990 8.09493 8.29581 8.81503 8.89539 9.50215 10.09325 10.92778 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013096 B = 0.005595 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.535347 B = 5003.195340 C = 6130.827281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.020 3.980 3 Si 0.899 3.101 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.266 4.266 8 H 0.065 0.935 9 N -0.537 5.537 10 C 0.374 3.626 11 N -0.617 5.617 12 C 0.082 3.918 13 C 0.069 3.931 14 C 0.054 3.946 15 N -0.523 5.523 16 C 0.052 3.948 17 C -0.146 4.146 18 C -0.086 4.086 19 C -0.151 4.151 20 C 0.048 3.952 21 O -0.332 6.332 22 C 0.633 3.367 23 O -0.540 6.540 24 C 0.124 3.876 25 C -0.192 4.192 26 C -0.219 4.219 27 H 0.261 0.739 28 H 0.125 0.875 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 0.892 -13.242 14.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.181 4.181 3 Si 0.728 3.272 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.395 4.395 8 H 0.083 0.917 9 N -0.254 5.254 10 C 0.168 3.832 11 N -0.368 5.368 12 C -0.043 4.043 13 C 0.029 3.971 14 C -0.074 4.074 15 N -0.243 5.243 16 C -0.076 4.076 17 C -0.185 4.185 18 C -0.105 4.105 19 C -0.190 4.190 20 C -0.081 4.081 21 O -0.243 6.243 22 C 0.386 3.614 23 O -0.427 6.427 24 C 0.016 3.984 25 C -0.231 4.231 26 C -0.259 4.259 27 H 0.072 0.928 28 H 0.142 0.858 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.111 0.889 44 H 0.117 0.883 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.822 0.435 -13.140 14.004 hybrid contribution -0.441 0.847 0.194 0.974 sum 4.382 1.281 -12.946 13.728 Atomic orbital electron populations 1.69841 1.05573 1.26594 1.51050 1.25252 0.95157 0.98897 0.98801 0.86280 0.79872 0.83304 0.77771 1.19795 1.21043 1.21205 1.19036 0.94654 0.84610 1.41237 0.91716 1.44026 1.49893 1.02821 1.28646 1.21317 0.86453 1.03049 0.72340 1.50581 1.56447 1.04141 1.25660 1.22854 0.98849 0.92413 0.90155 1.23407 0.98248 0.79571 0.95879 1.22630 0.90527 1.02236 0.92018 1.62678 1.56421 1.03339 1.01904 1.22218 0.93859 0.96829 0.94742 1.22192 0.97160 1.01188 0.97955 1.21351 1.00523 0.95546 0.93077 1.22368 0.98421 0.95163 1.03061 1.22275 0.91483 0.91421 1.02873 1.87179 1.68839 1.27771 1.40508 1.18961 0.77673 0.85816 0.78990 1.90946 1.55850 1.31248 1.64616 1.21225 0.92064 0.90298 0.94843 1.23088 1.06498 1.02044 0.91441 1.23258 0.99337 0.99222 1.04099 0.92834 0.85789 0.92037 0.89079 0.90207 0.88875 0.88463 0.90545 0.90410 0.91384 0.90746 0.89462 0.90626 0.90754 0.90093 0.90348 0.88899 0.88312 0.90653 0.90809 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.00 11.43 55.49 0.63 -22.37 16 2 C 0.02 0.49 4.97 -17.43 -0.09 0.41 16 3 Si 0.90 19.48 29.61 -169.99 -5.03 14.44 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.27 -6.61 8.04 -15.06 -0.12 -6.74 16 8 H 0.07 1.66 7.21 -52.48 -0.38 1.28 16 9 N -0.54 -12.79 3.02 -169.35 -0.51 -13.30 16 10 C 0.37 8.48 6.21 -63.76 -0.40 8.08 16 11 N -0.62 -12.50 3.21 -182.68 -0.59 -13.08 16 12 C 0.08 1.37 6.41 -3.34 -0.02 1.35 16 13 C 0.07 1.01 0.80 -90.59 -0.07 0.94 16 14 C 0.05 0.73 5.65 -3.90 -0.02 0.71 16 15 N -0.52 -5.95 5.24 -234.48 -1.23 -7.17 16 16 C 0.05 0.53 6.08 -3.75 -0.02 0.51 16 17 C -0.15 -1.56 5.63 -26.41 -0.15 -1.71 16 18 C -0.09 -1.03 2.61 -90.13 -0.24 -1.26 16 19 C -0.15 -1.50 5.50 -26.39 -0.15 -1.64 16 20 C 0.05 0.47 6.08 -3.75 -0.02 0.45 16 21 O -0.33 -6.13 9.96 -38.36 -0.38 -6.52 16 22 C 0.63 13.50 8.85 53.76 0.48 13.98 16 23 O -0.54 -13.24 17.55 -19.11 -0.34 -13.58 16 24 C 0.12 2.79 6.61 -67.93 -0.45 2.34 16 25 C -0.19 -3.92 9.81 -26.69 -0.26 -4.19 16 26 C -0.22 -4.49 10.08 -26.69 -0.27 -4.76 16 27 H 0.26 6.52 8.32 -40.82 -0.34 6.18 16 28 H 0.12 2.99 5.50 -51.93 -0.29 2.70 16 29 H 0.06 1.43 7.83 -51.93 -0.41 1.02 16 30 H 0.09 1.59 7.09 -51.93 -0.37 1.22 16 31 H 0.08 1.23 6.61 -51.93 -0.34 0.88 16 32 H 0.09 1.32 7.96 -51.93 -0.41 0.91 16 33 H 0.10 1.31 7.05 -51.93 -0.37 0.95 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.90 7.86 -51.93 -0.41 0.49 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.08 0.78 6.70 -51.93 -0.35 0.43 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 2.09 8.10 -51.93 -0.42 1.67 16 44 H 0.10 2.16 6.96 -51.93 -0.36 1.80 16 45 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 47 H 0.08 1.77 7.99 -51.93 -0.41 1.35 16 LS Contribution 363.14 15.07 5.47 5.47 Total: -1.00 -28.37 363.14 -11.22 -39.59 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -7.45 Total: 8.06 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -1.80 Total: 8.45 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -1.69 Total: -55.93 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.72 Total: -20.09 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.37 -11.22 -39.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495856522.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.913 kcal (2) G-P(sol) polarization free energy of solvation -28.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds