Wall clock time and date at job start Fri Apr 10 2020 18:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99866 * 2 1 4 4 H 1.48506 * 109.46901 * 269.99937 * 3 2 1 5 5 H 1.48497 * 109.47302 * 29.99726 * 3 2 1 6 6 H 1.48499 * 109.47362 * 150.00159 * 3 2 1 7 7 C 1.38809 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00544 * 189.62828 * 7 2 1 9 9 N 1.36944 * 119.99845 * 9.62298 * 7 2 1 10 10 C 1.46967 * 120.59215 * 212.70078 * 9 7 2 11 11 C 1.53373 * 108.63668 * 235.20625 * 10 9 7 12 12 N 1.46963 * 108.63149 * 310.58019 * 11 10 9 13 13 C 1.34783 * 120.59340 * 235.20047 * 12 11 10 14 14 O 1.21279 * 119.99725 * 355.27872 * 13 12 11 15 15 C 1.50701 * 120.00013 * 175.27490 * 13 12 11 16 16 C 1.50704 * 112.84721 * 66.23957 * 15 13 12 17 17 O 1.21283 * 119.99320 * 235.84806 * 16 15 13 18 18 N 1.34773 * 120.00264 * 55.57645 * 16 15 13 19 19 C 1.46497 * 120.00005 * 185.00265 * 18 16 15 20 20 C 1.53010 * 117.49612 * 227.31658 * 19 18 16 21 21 C 1.53002 * 117.49905 * 158.69713 * 19 18 16 22 22 C 1.53784 * 113.61154 * 197.42960 * 15 13 12 23 23 C 1.53957 * 87.01639 * 89.23328 * 22 15 13 24 24 C 1.53774 * 113.61395 * 295.03990 * 15 13 12 25 25 C 1.46965 * 118.81772 * 55.47722 * 12 11 10 26 26 C 1.46958 * 120.59385 * 32.68372 * 9 7 2 27 27 H 0.96991 * 120.00336 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.60664 * 115.46283 * 10 9 7 29 29 H 1.09005 * 109.61266 * 354.94842 * 10 9 7 30 30 H 1.08999 * 109.61399 * 190.83481 * 11 10 9 31 31 H 1.09006 * 109.60974 * 70.31867 * 11 10 9 32 32 H 0.97001 * 120.00002 * 5.00076 * 18 16 15 33 33 H 1.08999 * 115.55313 * 13.02219 * 19 18 16 34 34 H 1.08997 * 117.49741 * 359.97438 * 20 19 18 35 35 H 1.09001 * 117.49403 * 145.02069 * 20 19 18 36 36 H 1.08997 * 117.49560 * 214.97682 * 21 19 18 37 37 H 1.09003 * 117.49574 * 359.97438 * 21 19 18 38 38 H 1.08993 * 113.61257 * 203.74646 * 22 15 13 39 39 H 1.08992 * 113.61656 * 334.65779 * 22 15 13 40 40 H 1.09000 * 113.53734 * 270.81185 * 23 22 15 41 41 H 1.08999 * 113.74440 * 139.94629 * 23 22 15 42 42 H 1.08998 * 113.61735 * 25.34858 * 24 15 13 43 43 H 1.09007 * 113.61135 * 156.25299 * 24 15 13 44 44 H 1.08999 * 109.61112 * 64.26074 * 25 12 11 45 45 H 1.09001 * 109.61515 * 184.77877 * 25 12 11 46 46 H 1.09006 * 109.60530 * 244.53620 * 26 9 7 47 47 H 1.08999 * 109.60828 * 5.04602 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0789 -1.2087 0.1570 9 7 1.3400 -2.3798 -0.1972 10 6 1.7905 -3.6159 0.4579 11 6 2.0188 -4.6854 -0.6174 12 7 0.8359 -4.7357 -1.4882 13 6 0.1763 -5.8948 -1.6828 14 8 0.6060 -6.9243 -1.2072 15 6 -1.0953 -5.9115 -2.4915 16 6 -0.8704 -5.5725 -3.9426 17 8 -1.4809 -4.6572 -4.4530 18 7 0.0130 -6.2828 -4.6715 19 6 0.3129 -5.8856 -6.0494 20 6 0.3051 -6.9808 -7.1179 21 6 1.6308 -6.3736 -6.6543 22 6 -1.9440 -7.1762 -2.2787 23 6 -2.6287 -6.4247 -1.1226 24 6 -2.2464 -5.1225 -1.8457 25 6 0.3888 -3.5008 -2.1477 26 6 0.1573 -2.4302 -1.0679 27 1 -0.4850 0.8399 -0.0004 28 1 1.0280 -3.9577 1.1578 29 1 2.7226 -3.4286 0.9912 30 1 2.1654 -5.6557 -0.1431 31 1 2.8976 -4.4279 -1.2087 32 1 0.4502 -7.0570 -4.2839 33 1 -0.0384 -4.8956 -6.3404 34 1 0.0773 -7.9967 -6.7956 35 1 -0.0515 -6.7113 -8.1121 36 1 2.1463 -5.7048 -7.3435 37 1 2.2748 -6.9898 -6.0269 38 1 -2.6119 -7.3988 -3.1108 39 1 -1.3650 -8.0414 -1.9560 40 1 -2.1287 -6.5540 -0.1627 41 1 -3.7041 -6.5930 -1.0656 42 1 -1.9112 -4.3322 -1.1739 43 1 -2.9971 -4.7827 -2.5593 44 1 1.1542 -3.1609 -2.8454 45 1 -0.5413 -3.6886 -2.6842 46 1 -0.7215 -2.6877 -0.4766 47 1 0.0107 -1.4598 -1.5423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000524813582.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:49 Heat of formation + Delta-G solvation = 11.725911 kcal Electronic energy + Delta-G solvation = -29129.496466 eV Core-core repulsion = 25314.921919 eV Total energy + Delta-G solvation = -3814.574547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.35034 -39.14828 -37.76278 -37.05134 -36.33116 -33.89689 -32.94057 -31.42327 -30.21409 -27.90001 -26.57924 -25.68905 -23.83747 -22.89499 -22.64427 -22.48246 -21.40870 -20.95238 -19.70464 -18.38841 -17.98072 -16.78042 -16.52013 -16.00578 -15.74694 -15.21592 -14.90631 -14.78163 -14.56420 -14.33935 -14.23407 -13.67086 -13.34320 -13.25391 -13.13609 -12.91477 -12.47626 -12.40601 -12.15134 -11.84663 -11.61362 -11.51702 -11.36874 -11.24009 -10.95564 -10.87538 -10.76997 -10.73659 -10.53607 -10.40933 -10.21112 -10.10664 -9.88092 -9.75444 -9.40764 -8.92978 -8.59751 -8.32400 -6.66752 -5.85742 -3.37538 2.36029 2.67252 2.98156 3.27198 3.33675 3.40587 3.41636 3.67516 4.41203 4.42860 4.46009 4.52604 4.57380 4.66442 4.71887 4.75582 4.78354 5.30285 5.32788 5.35806 5.36709 5.55347 5.61451 5.70129 5.78646 5.79044 5.81253 5.84980 5.91154 5.92158 5.98934 6.08280 6.12029 6.19501 6.29293 6.35598 6.37537 6.41908 6.74265 6.87535 7.20760 7.29882 7.49746 7.70440 7.80252 8.06452 8.37210 8.38866 9.12295 9.72298 10.31119 11.21478 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.004220 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.810681 B = 6634.136229 C = 7310.241002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.008 3.992 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.259 4.259 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.132 3.868 11 C 0.094 3.906 12 N -0.584 5.584 13 C 0.537 3.463 14 O -0.551 6.551 15 C -0.134 4.134 16 C 0.545 3.455 17 O -0.523 6.523 18 N -0.700 5.700 19 C 0.081 3.919 20 C -0.194 4.194 21 C -0.188 4.188 22 C -0.109 4.109 23 C -0.138 4.138 24 C -0.110 4.110 25 C 0.066 3.934 26 C 0.163 3.837 27 H 0.256 0.744 28 H 0.024 0.976 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.404 0.596 33 H 0.138 0.862 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.086 0.914 46 H 0.025 0.975 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 -14.468 -9.797 17.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.388 4.388 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.005 3.995 11 C -0.030 4.030 12 N -0.314 5.314 13 C 0.323 3.677 14 O -0.430 6.430 15 C -0.140 4.140 16 C 0.330 3.670 17 O -0.398 6.398 18 N -0.350 5.350 19 C -0.025 4.025 20 C -0.233 4.233 21 C -0.226 4.226 22 C -0.147 4.147 23 C -0.176 4.176 24 C -0.148 4.148 25 C -0.058 4.058 26 C 0.036 3.964 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.238 0.762 33 H 0.156 0.844 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.121 0.879 44 H 0.079 0.921 45 H 0.104 0.896 46 H 0.043 0.957 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.232 -14.116 -9.863 17.365 hybrid contribution 0.765 0.590 0.049 0.967 sum -1.467 -13.526 -9.814 16.776 Atomic orbital electron populations 1.69930 1.05302 1.25772 1.53646 1.25215 0.95440 0.98516 0.99934 0.86233 0.79046 0.83352 0.77748 1.21309 1.21585 1.20361 1.19185 0.90711 0.83606 1.45330 0.91660 1.43940 1.32115 1.04272 1.51025 1.21307 0.98617 0.87175 0.92400 1.22288 0.86438 1.00926 0.93299 1.48030 1.28883 1.08440 1.46080 1.19410 0.83822 0.83663 0.80802 1.90638 1.68086 1.32219 1.52044 1.22338 0.96215 1.03122 0.92333 1.19951 0.78475 0.81444 0.87087 1.90716 1.47311 1.29581 1.72185 1.45396 1.44400 1.32291 1.12883 1.21616 1.00724 0.98973 0.81161 1.23426 1.01072 0.98944 0.99815 1.23364 0.91171 1.04237 1.03819 1.22841 0.97182 0.95329 0.99299 1.22863 1.01048 0.95679 0.97975 1.23018 0.95035 0.97390 0.99371 1.23066 0.99831 0.85388 0.97477 1.21247 0.88686 0.96875 0.89569 0.93369 0.95828 0.91421 0.89956 0.91862 0.76151 0.84416 0.88554 0.88006 0.87724 0.88422 0.89273 0.89186 0.89630 0.90497 0.89361 0.87880 0.92062 0.89586 0.95684 0.88112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.44 11.05 55.49 0.61 -24.83 16 2 C 0.01 0.22 5.07 -17.43 -0.09 0.13 16 3 Si 0.91 21.21 29.56 -169.99 -5.03 16.18 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.26 -6.89 9.57 -15.06 -0.14 -7.03 16 8 H 0.07 1.71 7.85 -52.48 -0.41 1.29 16 9 N -0.59 -14.42 2.96 -171.76 -0.51 -14.93 16 10 C 0.13 2.74 6.67 -3.59 -0.02 2.72 16 11 C 0.09 1.72 6.58 -3.60 -0.02 1.70 16 12 N -0.58 -10.63 2.94 -172.21 -0.51 -11.14 16 13 C 0.54 9.10 6.24 -10.98 -0.07 9.03 16 14 O -0.55 -10.13 15.37 5.56 0.09 -10.04 16 15 C -0.13 -1.94 0.55 -156.00 -0.09 -2.02 16 16 C 0.54 8.01 5.46 -10.99 -0.06 7.95 16 17 O -0.52 -9.00 14.52 5.56 0.08 -8.92 16 18 N -0.70 -8.58 5.47 -53.80 -0.29 -8.88 16 19 C 0.08 0.88 6.39 -67.93 -0.43 0.45 16 20 C -0.19 -1.61 10.46 -26.72 -0.28 -1.89 16 21 C -0.19 -1.62 10.45 -26.73 -0.28 -1.90 16 22 C -0.11 -1.30 7.10 -25.82 -0.18 -1.48 16 23 C -0.14 -1.69 7.81 -25.83 -0.20 -1.89 16 24 C -0.11 -1.58 5.76 -25.92 -0.15 -1.73 16 25 C 0.07 1.29 5.37 -3.37 -0.02 1.27 16 26 C 0.16 3.78 5.40 -3.37 -0.02 3.76 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 1.34 7.93 -51.93 -0.41 0.92 16 30 H 0.08 1.43 7.02 -51.93 -0.36 1.07 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.40 4.51 8.76 -40.82 -0.36 4.15 16 33 H 0.14 1.68 7.48 -51.93 -0.39 1.29 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 39 H 0.09 1.10 7.34 -51.93 -0.38 0.71 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.09 1.45 6.25 -51.93 -0.32 1.13 16 43 H 0.10 1.44 7.53 -51.93 -0.39 1.05 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.09 1.60 3.41 -51.93 -0.18 1.42 16 46 H 0.03 0.61 7.24 -51.93 -0.38 0.24 16 47 H 0.10 2.63 6.08 -51.93 -0.32 2.31 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -30.51 368.65 -9.32 -39.82 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -7.26 Total: 8.12 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -2.06 Total: 9.05 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.70 Total: -59.77 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.17 Total: -18.96 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.51 -9.32 -39.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524813582.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.550 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds