Wall clock time and date at job start Fri Apr 10 2020 18:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99989 * 2 1 4 4 H 1.48503 * 109.47339 * 270.00444 * 3 2 1 5 5 H 1.48501 * 109.47255 * 30.00071 * 3 2 1 6 6 H 1.48495 * 109.47311 * 150.00020 * 3 2 1 7 7 C 1.37881 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99793 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99517 * 180.02562 * 7 2 1 10 10 N 1.46910 * 109.46707 * 181.93086 * 9 7 2 11 11 C 1.46900 * 110.99683 * 301.84932 * 10 9 7 12 12 C 1.52997 * 109.47460 * 288.05979 * 11 10 9 13 13 N 1.46901 * 109.47189 * 182.18053 * 12 11 10 14 14 C 1.47017 * 110.99803 * 293.63217 * 13 12 11 15 15 C 1.53097 * 109.25597 * 177.61040 * 14 13 12 16 16 O 1.43015 * 109.26022 * 56.84606 * 15 14 13 17 17 C 1.43014 * 113.73810 * 301.32986 * 16 15 14 18 18 C 1.47010 * 110.99726 * 169.99988 * 13 12 11 19 19 C 1.46899 * 110.99997 * 65.80235 * 10 9 7 20 20 C 1.50706 * 109.46888 * 72.94885 * 19 10 9 21 21 N 1.31835 * 119.65920 * 83.15700 * 20 19 10 22 22 C 1.31852 * 121.78219 * 179.97438 * 21 20 19 23 23 C 1.38253 * 120.88549 * 0.02605 * 22 21 20 24 24 C 1.38542 * 119.21978 * 359.97375 * 23 22 21 25 25 C 1.38701 * 119.65607 * 262.88329 * 20 19 10 26 26 O 1.35914 * 120.47611 * 0.02562 * 25 20 19 27 27 H 0.97004 * 120.00005 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47765 * 61.92999 * 9 7 2 29 29 H 1.09006 * 109.47252 * 301.91912 * 9 7 2 30 30 H 1.08999 * 109.46920 * 168.05572 * 11 10 9 31 31 H 1.09004 * 109.47057 * 48.06064 * 11 10 9 32 32 H 1.08997 * 109.47153 * 62.18017 * 12 11 10 33 33 H 1.09001 * 109.46901 * 302.17873 * 12 11 10 34 34 H 1.08997 * 109.50525 * 297.54040 * 14 13 12 35 35 H 1.09001 * 109.50584 * 57.67303 * 14 13 12 36 36 H 1.09007 * 109.50415 * 296.91101 * 15 14 13 37 37 H 1.08997 * 109.54033 * 176.80578 * 15 14 13 38 38 H 1.08997 * 109.50767 * 298.73598 * 17 16 15 39 39 H 1.09006 * 109.53802 * 178.62433 * 17 16 15 40 40 H 1.09002 * 109.50780 * 302.31931 * 18 13 12 41 41 H 1.08999 * 109.51098 * 62.41191 * 18 13 12 42 42 H 1.09001 * 109.46857 * 192.94035 * 19 10 9 43 43 H 1.08997 * 109.47567 * 312.94813 * 19 10 9 44 44 H 1.07997 * 119.55916 * 179.97438 * 22 21 20 45 45 H 1.07992 * 120.39115 * 180.02562 * 23 22 21 46 46 H 1.07996 * 120.81301 * 180.02562 * 24 23 22 47 47 H 0.96705 * 114.00347 * 95.30820 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0013 -2.5782 -0.0474 11 6 3.4940 -3.3553 1.0914 12 6 4.1970 -2.9014 2.3723 13 7 3.7278 -3.7139 3.5026 14 6 2.3072 -3.4579 3.7816 15 6 1.8454 -4.3662 4.9243 16 8 2.6715 -4.1402 6.0697 17 6 4.0614 -4.3808 5.8336 18 6 4.5456 -3.4726 4.7002 19 6 3.6473 -3.2185 -1.3212 20 6 4.5074 -2.6547 -2.4228 21 7 5.7179 -3.1390 -2.6181 22 6 6.5054 -2.6775 -3.5696 23 6 6.0869 -1.6586 -4.4052 24 6 4.8216 -1.1208 -4.2346 25 6 4.0150 -1.6355 -3.2245 26 8 2.7645 -1.1428 -3.0227 27 1 -0.4850 0.8401 -0.0004 28 1 3.8746 -0.7110 0.9072 29 1 3.8752 -0.6499 -0.8718 30 1 3.6906 -4.4144 0.9248 31 1 2.4202 -3.1962 1.1903 32 1 3.9688 -1.8521 2.5596 33 1 5.2740 -3.0244 2.2588 34 1 2.1750 -2.4150 4.0696 35 1 1.7175 -3.6674 2.8891 36 1 1.9273 -5.4087 4.6164 37 1 0.8085 -4.1405 5.1731 38 1 4.2076 -5.4236 5.5522 39 1 4.6277 -4.1653 6.7398 40 1 5.5898 -3.6928 4.4783 41 1 4.4498 -2.4297 5.0023 42 1 3.8121 -4.2933 -1.2456 43 1 2.5980 -3.0266 -1.5451 44 1 7.4908 -3.1005 -3.6975 45 1 6.7383 -1.2870 -5.1822 46 1 4.4684 -0.3245 -4.8730 47 1 2.7383 -0.3514 -2.4675 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575217981.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:52 Heat of formation + Delta-G solvation = -52.312388 kcal Electronic energy + Delta-G solvation = -28313.564293 eV Core-core repulsion = 24496.212837 eV Total energy + Delta-G solvation = -3817.351456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.50066 -40.55613 -38.78131 -37.99680 -36.56907 -34.58792 -33.37642 -32.18291 -31.73680 -30.76644 -29.40828 -27.50802 -25.95091 -24.98507 -24.44680 -24.01710 -22.61851 -21.42632 -21.06585 -19.33716 -19.09050 -17.77263 -17.68845 -17.32598 -17.10040 -16.74160 -16.40276 -16.29816 -15.97724 -15.92263 -15.69958 -15.48340 -14.91310 -14.50460 -14.41495 -14.28721 -14.23986 -13.95361 -13.57043 -13.36376 -13.12173 -12.91546 -12.80879 -12.70469 -12.35132 -12.28883 -12.16683 -12.10947 -11.91095 -11.73404 -11.64678 -11.40997 -10.77570 -10.68714 -10.65660 -10.22586 -9.69683 -9.45232 -8.97198 -8.28032 -6.29935 0.09757 0.29981 1.24651 1.33391 1.41174 2.28769 2.56404 2.78547 2.95896 3.06039 3.26075 3.39277 3.56041 3.88857 3.93543 4.01762 4.04560 4.06471 4.15459 4.20174 4.23545 4.36168 4.47563 4.49227 4.57963 4.60949 4.67846 4.71779 4.74954 4.82548 4.84799 4.89976 4.95823 4.99765 5.05465 5.06588 5.15375 5.17766 5.24890 5.47582 5.68971 5.88490 5.98229 6.11446 6.17429 6.32676 6.33867 6.64732 6.74187 7.11276 7.32848 8.87942 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011887 B = 0.004356 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.982600 B = 6426.204293 C = 8023.923434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.028 3.972 3 Si 0.917 3.083 4 H -0.253 1.253 5 H -0.289 1.289 6 H -0.258 1.258 7 C -0.523 4.523 8 H 0.041 0.959 9 C 0.168 3.832 10 N -0.520 5.520 11 C 0.072 3.928 12 C 0.079 3.921 13 N -0.534 5.534 14 C 0.019 3.981 15 C 0.071 3.929 16 O -0.405 6.405 17 C 0.065 3.935 18 C 0.016 3.984 19 C 0.114 3.886 20 C 0.109 3.891 21 N -0.477 5.477 22 C 0.079 3.921 23 C -0.148 4.148 24 C -0.117 4.117 25 C 0.043 3.957 26 O -0.495 6.495 27 H 0.264 0.736 28 H 0.021 0.979 29 H 0.016 0.984 30 H 0.074 0.926 31 H 0.029 0.971 32 H 0.013 0.987 33 H 0.085 0.915 34 H 0.020 0.980 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.120 0.880 40 H 0.104 0.896 41 H 0.028 0.972 42 H 0.080 0.920 43 H 0.046 0.954 44 H 0.191 0.809 45 H 0.178 0.822 46 H 0.155 0.845 47 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.336 -5.184 0.244 14.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.171 4.171 3 Si 0.742 3.258 4 H -0.178 1.178 5 H -0.216 1.216 6 H -0.182 1.182 7 C -0.562 4.562 8 H 0.059 0.941 9 C 0.041 3.959 10 N -0.243 5.243 11 C -0.057 4.057 12 C -0.049 4.049 13 N -0.260 5.260 14 C -0.110 4.110 15 C -0.006 4.006 16 O -0.324 6.324 17 C -0.012 4.012 18 C -0.112 4.112 19 C -0.015 4.015 20 C -0.029 4.029 21 N -0.187 5.187 22 C -0.079 4.079 23 C -0.167 4.167 24 C -0.144 4.144 25 C -0.005 4.005 26 O -0.306 6.306 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.034 0.966 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.032 0.968 33 H 0.104 0.896 34 H 0.038 0.962 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.138 0.862 40 H 0.122 0.878 41 H 0.046 0.954 42 H 0.099 0.901 43 H 0.064 0.936 44 H 0.208 0.792 45 H 0.195 0.805 46 H 0.173 0.827 47 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 13.777 -6.629 0.532 15.298 hybrid contribution -1.584 3.024 -0.417 3.439 sum 12.193 -3.604 0.115 12.715 Atomic orbital electron populations 1.70040 1.07947 1.27701 1.52036 1.25581 0.95097 1.01928 0.94519 0.86182 0.79459 0.80294 0.79912 1.17766 1.21556 1.18198 1.21574 0.91519 0.93094 1.50007 0.94090 1.19993 0.92522 0.87707 0.95729 1.62286 1.58205 1.02779 1.01029 1.21865 0.97189 0.96832 0.89793 1.21825 0.99889 0.93586 0.89604 1.62212 1.02509 1.55516 1.05717 1.22764 0.90279 0.97994 0.99950 1.22680 0.94954 0.98636 0.84285 1.87935 1.18858 1.90129 1.35439 1.22829 0.81335 0.98803 0.98200 1.22889 0.99141 0.98556 0.90621 1.20652 0.95721 0.97699 0.87428 1.21426 0.91625 0.94777 0.95081 1.67490 1.03476 1.28390 1.19382 1.23416 1.00047 0.94094 0.90328 1.22459 0.95717 0.97089 1.01438 1.22280 0.94311 1.00448 0.97323 1.19752 0.86458 0.97155 0.97132 1.84823 1.23930 1.49019 1.72818 0.92698 0.96112 0.96569 0.90765 0.95260 0.96820 0.89640 0.96206 0.90505 0.91218 0.87556 0.91347 0.86203 0.87821 0.95354 0.90124 0.93575 0.79202 0.80466 0.82689 0.75123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.31 13.96 21.45 0.30 -55.01 16 2 C 0.03 1.49 5.37 84.66 0.45 1.95 16 3 Si 0.92 40.92 26.93 68.60 1.85 42.77 16 4 H -0.25 -10.35 7.11 99.48 0.71 -9.65 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 6 H -0.26 -11.13 6.60 99.48 0.66 -10.48 16 7 C -0.52 -27.35 6.80 25.60 0.17 -27.17 16 8 H 0.04 2.44 6.26 -2.91 -0.02 2.42 16 9 C 0.17 7.61 3.55 85.55 0.30 7.92 16 10 N -0.52 -21.24 4.61 -905.33 -4.17 -25.41 16 11 C 0.07 2.75 4.67 86.30 0.40 3.16 16 12 C 0.08 2.75 4.96 86.30 0.43 3.18 16 13 N -0.53 -16.39 4.73 -895.21 -4.23 -20.63 16 14 C 0.02 0.61 5.44 86.31 0.47 1.08 16 15 C 0.07 1.90 7.01 72.01 0.50 2.40 16 16 O -0.40 -11.05 10.83 -148.98 -1.61 -12.66 16 17 C 0.06 1.40 7.01 72.02 0.50 1.91 16 18 C 0.02 0.40 5.64 86.32 0.49 0.89 16 19 C 0.11 4.58 5.03 85.56 0.43 5.01 16 20 C 0.11 4.07 5.82 42.67 0.25 4.31 16 21 N -0.48 -15.79 10.27 -183.50 -1.88 -17.67 16 22 C 0.08 1.90 11.18 84.69 0.95 2.85 16 23 C -0.15 -3.13 10.11 22.35 0.23 -2.90 16 24 C -0.12 -3.21 10.13 22.56 0.23 -2.98 16 25 C 0.04 1.54 5.80 22.60 0.13 1.67 16 26 O -0.49 -20.48 11.72 -92.58 -1.08 -21.56 16 27 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 28 H 0.02 0.98 6.02 -2.39 -0.01 0.97 16 29 H 0.02 0.73 4.58 -2.38 -0.01 0.72 16 30 H 0.07 2.66 7.72 -2.39 -0.02 2.65 16 31 H 0.03 1.31 4.48 -2.38 -0.01 1.30 16 32 H 0.01 0.54 6.87 -2.39 -0.02 0.52 16 33 H 0.09 2.77 8.04 -2.39 -0.02 2.75 16 34 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 2.75 6.43 -2.39 -0.02 2.73 16 36 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 40 H 0.10 2.17 8.09 -2.39 -0.02 2.15 16 41 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 3.04 7.71 -2.39 -0.02 3.02 16 43 H 0.05 2.15 5.80 -2.39 -0.01 2.14 16 44 H 0.19 3.01 8.06 -2.91 -0.02 2.99 16 45 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 46 H 0.16 3.49 8.06 -2.91 -0.02 3.46 16 47 H 0.39 16.24 6.46 -74.05 -0.48 15.76 16 Total: -1.00 -66.43 362.11 -4.44 -70.87 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: 0.46 Total: 36.05 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 5.94 Total: 3.26 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -9.99 Total: -118.72 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -2.70 Total: -34.22 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.85 Total: 42.77 kcal Total: -66.43 -4.44 -70.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575217981.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.560 kcal (2) G-P(sol) polarization free energy of solvation -66.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds