Wall clock time and date at job start Fri Apr 10 2020 18:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00028 * 2 1 4 4 H 1.48498 * 109.47287 * 274.99192 * 3 2 1 5 5 H 1.48502 * 109.47106 * 34.98862 * 3 2 1 6 6 H 1.48500 * 109.47108 * 154.99124 * 3 2 1 7 7 C 1.38813 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00051 * 187.15961 * 7 2 1 9 9 N 1.36939 * 120.00096 * 7.15119 * 7 2 1 10 10 C 1.46772 * 125.36096 * 354.91324 * 9 7 2 11 11 C 1.53913 * 107.62883 * 178.82339 * 10 9 7 12 12 H 1.09004 * 109.51854 * 100.77440 * 11 10 9 13 13 O 1.40846 * 110.30464 * 221.40860 * 11 10 9 14 14 C 1.41326 * 118.30662 * 68.01624 * 13 11 10 15 15 C 1.51960 * 111.60845 * 56.88706 * 14 13 11 16 16 N 1.44952 * 111.94148 * 319.69443 * 15 14 13 17 17 C 1.34777 * 117.34077 * 203.75866 * 16 15 14 18 18 O 1.21286 * 119.99758 * 177.82279 * 17 16 15 19 19 C 1.50697 * 120.00153 * 357.81754 * 17 16 15 20 20 C 1.56244 * 116.68786 * 71.57056 * 19 17 16 21 21 C 1.56947 * 102.16684 * 159.28957 * 20 19 17 22 22 N 1.49525 * 105.46502 * 1.12859 * 21 20 19 23 23 C 1.49524 * 105.92314 * 70.93978 * 22 21 20 24 24 C 1.54655 * 105.28471 * 288.73448 * 23 22 21 25 25 C 1.50459 * 102.03648 * 324.52685 * 22 21 20 26 26 C 1.44550 * 125.32160 * 23.75494 * 16 15 14 27 27 H 1.09006 * 109.29839 * 106.18681 * 26 16 15 28 28 C 1.46865 * 125.36527 * 174.93237 * 9 7 2 29 29 H 0.96998 * 120.00165 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.82599 * 59.30080 * 10 9 7 31 31 H 1.08999 * 109.89597 * 298.39010 * 10 9 7 32 32 H 1.08994 * 109.05527 * 177.44407 * 14 13 11 33 33 H 1.09006 * 109.05089 * 296.34355 * 14 13 11 34 34 H 1.09003 * 108.98418 * 80.33298 * 15 14 13 35 35 H 1.09004 * 108.98955 * 199.05572 * 15 14 13 36 36 H 1.09003 * 110.66775 * 277.39129 * 20 19 17 37 37 H 1.08998 * 110.66629 * 40.52404 * 20 19 17 38 38 H 1.08997 * 110.46254 * 241.97903 * 21 20 19 39 39 H 1.08999 * 109.92237 * 119.99170 * 21 20 19 40 40 H 1.09007 * 110.27781 * 169.78470 * 23 22 21 41 41 H 1.09001 * 110.27841 * 47.69203 * 23 22 21 42 42 H 1.08998 * 110.67163 * 240.91001 * 24 23 22 43 43 H 1.09000 * 110.80866 * 117.83844 * 24 23 22 44 44 H 1.09004 * 112.69938 * 297.54659 * 25 22 21 45 45 H 1.08999 * 111.12599 * 171.33703 * 25 22 21 46 46 H 1.09005 * 110.06784 * 317.02236 * 28 9 7 47 47 H 1.09003 * 110.06322 * 78.53728 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0839 -1.2059 0.1160 9 7 1.3335 -2.3834 -0.1487 10 6 -0.1262 -2.5243 -0.2092 11 6 -0.4424 -4.0172 -0.4100 12 1 -0.7342 -4.4590 0.5428 13 8 -1.4868 -4.1745 -1.3418 14 6 -1.2380 -3.8351 -2.6910 15 6 -0.0593 -4.6110 -3.2550 16 7 1.0209 -4.7282 -2.2956 17 6 2.2608 -4.9350 -2.7818 18 8 3.2059 -5.0009 -2.0244 19 6 2.4730 -5.0844 -4.2662 20 6 2.3152 -3.7927 -5.1311 21 6 3.1085 -4.1671 -6.4325 22 7 3.5922 -5.5654 -6.2162 23 6 2.3786 -6.4356 -6.2919 24 6 1.5824 -6.1380 -4.9998 25 6 3.8900 -5.5698 -4.7414 26 6 0.8767 -4.6414 -0.8599 27 1 0.9776 -5.6366 -0.4269 28 6 1.9540 -3.7089 -0.2716 29 1 -0.4850 0.8400 0.0004 30 1 -0.5188 -1.9475 -1.0466 31 1 -0.5716 -2.1741 0.7219 32 1 -2.1259 -4.0564 -3.2832 33 1 -1.0253 -2.7680 -2.7561 34 1 -0.3940 -5.6095 -3.5361 35 1 0.3096 -4.0991 -4.1438 36 1 1.2651 -3.6064 -5.3563 37 1 2.7595 -2.9350 -4.6262 38 1 3.9532 -3.4924 -6.5712 39 1 2.4453 -4.1263 -7.2965 40 1 2.6683 -7.4860 -6.3237 41 1 1.7845 -6.1799 -7.1692 42 1 1.4771 -7.0396 -4.3965 43 1 0.6047 -5.7179 -5.2356 44 1 4.6743 -4.8637 -4.4686 45 1 4.1144 -6.5765 -4.3889 46 1 2.8124 -3.6593 -0.9417 47 1 2.2650 -4.0686 0.7092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083249083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:46 Heat of formation + Delta-G solvation = -12.264924 kcal Electronic energy + Delta-G solvation = -30033.202969 eV Core-core repulsion = 26217.588101 eV Total energy + Delta-G solvation = -3815.614868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.70197 -41.30356 -39.46632 -37.63436 -36.26196 -34.43516 -32.09190 -31.54377 -31.45100 -29.65886 -29.17263 -28.82645 -26.61283 -24.73930 -23.88378 -23.52677 -22.33248 -21.71448 -20.59618 -19.86710 -19.02428 -18.27882 -17.95985 -17.13990 -17.10768 -16.87209 -16.50957 -16.19709 -16.09966 -15.83989 -15.66566 -15.21850 -14.57831 -14.24727 -14.17790 -13.93225 -13.88927 -13.75176 -13.41312 -13.17156 -13.00246 -12.89774 -12.87796 -12.69548 -12.48325 -12.38996 -12.27677 -12.15512 -12.09435 -11.89862 -11.82534 -11.43493 -11.26773 -10.87364 -10.75697 -10.33827 -10.03686 -9.58690 -8.92622 -7.92521 -5.27222 1.39838 1.40579 1.41879 1.51014 1.77008 2.42672 2.71209 2.78313 3.24884 3.25072 3.43404 3.45354 3.60628 3.67736 3.75130 3.84868 3.90664 4.01596 4.05785 4.11766 4.17681 4.29556 4.33674 4.35964 4.48214 4.51094 4.52599 4.60053 4.68939 4.75106 4.82115 4.84235 4.93076 4.94058 4.97301 5.02001 5.06790 5.14587 5.36533 5.44029 5.46853 5.59695 5.61611 5.68814 6.12749 6.20220 6.38455 7.02863 7.08224 7.70065 8.32391 9.17197 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.014378 B = 0.004977 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.921487 B = 5624.094440 C = 6469.124214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.056 4.056 3 Si 0.975 3.025 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.618 5.618 10 C 0.164 3.836 11 C 0.085 3.915 12 H 0.127 0.873 13 O -0.370 6.370 14 C 0.050 3.950 15 C 0.069 3.931 16 N -0.584 5.584 17 C 0.537 3.463 18 O -0.562 6.562 19 C -0.133 4.133 20 C -0.134 4.134 21 C 0.020 3.980 22 N -0.472 5.472 23 C 0.016 3.984 24 C -0.131 4.131 25 C 0.041 3.959 26 C 0.121 3.879 27 H 0.091 0.909 28 C 0.108 3.892 29 H 0.249 0.751 30 H 0.027 0.973 31 H 0.012 0.988 32 H 0.148 0.852 33 H 0.027 0.973 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.070 0.930 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 -14.329 -15.545 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.249 4.249 3 Si 0.803 3.197 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.345 5.345 10 C 0.038 3.962 11 C 0.026 3.974 12 H 0.145 0.855 13 O -0.287 6.287 14 C -0.027 4.027 15 C -0.053 4.053 16 N -0.316 5.316 17 C 0.326 3.674 18 O -0.442 6.442 19 C -0.138 4.138 20 C -0.173 4.173 21 C -0.109 4.109 22 N -0.191 5.191 23 C -0.113 4.113 24 C -0.170 4.170 25 C -0.088 4.088 26 C 0.016 3.984 27 H 0.109 0.891 28 C -0.017 4.017 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.030 0.970 32 H 0.165 0.835 33 H 0.045 0.955 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.121 0.879 42 H 0.095 0.905 43 H 0.121 0.879 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -1.280 -14.448 -15.569 21.279 hybrid contribution 0.120 1.860 1.338 2.294 sum -1.160 -12.588 -14.231 19.035 Atomic orbital electron populations 1.70170 1.06054 1.25399 1.57702 1.25572 0.96594 1.00625 1.02133 0.85123 0.77807 0.79368 0.77449 1.21196 1.21523 1.19774 1.19318 0.91261 0.83946 1.42870 0.91122 1.44455 1.02043 1.01981 1.86034 1.21420 0.84184 0.91818 0.98762 1.22674 0.86094 0.95665 0.92979 0.85521 1.86875 1.37167 1.86782 1.17923 1.22564 0.99726 0.97753 0.82620 1.22298 0.87777 1.03074 0.92175 1.46664 1.08403 1.70779 1.05719 1.20189 0.81942 0.75355 0.89918 1.90590 1.42378 1.51061 1.60162 1.23676 1.00485 0.99865 0.89790 1.23705 1.02516 0.94981 0.96139 1.24033 0.99232 0.90948 0.96658 1.69978 1.27219 1.06164 1.15773 1.23712 0.90698 0.99361 0.97492 1.23433 0.99242 0.97596 0.96735 1.24221 0.94223 1.01778 0.88583 1.21496 0.96591 0.99152 0.81191 0.89145 1.22132 0.96996 0.84776 0.97839 0.94169 0.95465 0.96998 0.83454 0.95484 0.87943 0.87947 0.88355 0.93372 0.90102 0.87595 0.88956 0.87893 0.90532 0.87943 0.90807 0.89319 0.91250 0.96331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.23 10.31 21.65 0.22 -57.01 16 2 C -0.06 -3.25 5.48 84.86 0.46 -2.78 16 3 Si 0.97 47.01 29.56 68.60 2.03 49.04 16 4 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 6 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 7 C -0.25 -14.52 10.24 84.03 0.86 -13.65 16 8 H 0.07 4.16 7.84 -2.91 -0.02 4.14 16 9 N -0.62 -33.51 3.39 -696.34 -2.36 -35.87 16 10 C 0.16 8.26 5.03 86.64 0.44 8.69 16 11 C 0.09 3.26 3.83 30.81 0.12 3.38 16 12 H 0.13 4.38 8.14 -2.38 -0.02 4.36 16 13 O -0.37 -12.43 10.24 -146.16 -1.50 -13.93 16 14 C 0.05 1.35 6.72 71.64 0.48 1.83 16 15 C 0.07 1.59 4.70 86.33 0.41 1.99 16 16 N -0.58 -18.54 3.09 -806.47 -2.49 -21.03 16 17 C 0.54 17.63 6.67 87.66 0.58 18.21 16 18 O -0.56 -23.00 13.50 -3.05 -0.04 -23.04 16 19 C -0.13 -3.12 0.92 -49.21 -0.05 -3.16 16 20 C -0.13 -2.89 5.53 33.11 0.18 -2.71 16 21 C 0.02 0.35 6.67 87.18 0.58 0.93 16 22 N -0.47 -8.87 6.94 -851.63 -5.91 -14.78 16 23 C 0.02 0.21 6.60 86.36 0.57 0.78 16 24 C -0.13 -1.96 4.58 32.29 0.15 -1.81 16 25 C 0.04 0.98 6.11 87.06 0.53 1.51 16 26 C 0.12 4.49 3.40 45.65 0.16 4.64 16 27 H 0.09 3.03 8.14 -2.38 -0.02 3.01 16 28 C 0.11 5.04 6.29 86.70 0.55 5.58 16 29 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.03 1.52 5.66 -2.39 -0.01 1.51 16 31 H 0.01 0.67 7.58 -2.39 -0.02 0.66 16 32 H 0.15 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.03 0.92 6.82 -2.38 -0.02 0.91 16 34 H 0.10 1.69 6.96 -2.39 -0.02 1.67 16 35 H 0.10 2.06 3.62 -2.38 -0.01 2.06 16 36 H 0.10 1.70 5.86 -2.39 -0.01 1.69 16 37 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.11 1.28 7.69 -2.39 -0.02 1.26 16 40 H 0.09 1.10 8.14 -2.38 -0.02 1.09 16 41 H 0.10 0.92 7.69 -2.39 -0.02 0.91 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.10 1.10 5.71 -2.39 -0.01 1.08 16 44 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.09 2.06 8.13 -2.39 -0.02 2.04 16 46 H 0.07 3.52 4.82 -8.58 -0.04 3.48 16 47 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -74.85 341.09 -3.07 -77.93 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.95 Total: 15.27 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 6.02 Total: 23.43 kcal Atomic # 7 Polarization: -118.15 SS G_CDS: -10.54 Total: -128.68 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -1.54 Total: -36.97 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -74.85 -3.07 -77.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083249083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.661 kcal (2) G-P(sol) polarization free energy of solvation -74.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds