Wall clock time and date at job start Fri Apr 10 2020 18:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00134 * 2 1 4 4 H 1.48501 * 109.47288 * 270.00294 * 3 2 1 5 5 H 1.48498 * 109.46923 * 30.00409 * 3 2 1 6 6 H 1.48501 * 109.46853 * 150.00293 * 3 2 1 7 7 C 1.38818 * 119.99611 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99418 * 194.44734 * 7 2 1 9 9 N 1.36932 * 120.00147 * 14.73371 * 7 2 1 10 10 C 1.46546 * 119.73352 * 204.63473 * 9 7 2 11 11 C 1.53956 * 107.57751 * 237.76730 * 10 9 7 12 12 C 1.53066 * 108.39337 * 299.98108 * 11 10 9 13 13 H 1.08998 * 114.44406 * 276.29645 * 12 11 10 14 14 C 1.52798 * 111.38350 * 144.15314 * 12 11 10 15 15 N 1.47282 * 87.32098 * 274.42546 * 14 12 11 16 16 C 1.34783 * 136.54143 * 150.71649 * 15 14 12 17 17 O 1.21281 * 119.99898 * 179.97438 * 16 15 14 18 18 C 1.50691 * 120.00012 * 0.02562 * 16 15 14 19 19 C 1.53003 * 109.47266 * 179.97438 * 18 16 15 20 20 H 1.08995 * 109.60196 * 54.99527 * 19 18 16 21 21 C 1.53344 * 109.60441 * 175.32107 * 19 18 16 22 22 C 1.53076 * 108.42207 * 187.28616 * 21 19 18 23 23 C 1.50174 * 109.89208 * 311.10103 * 22 21 19 24 24 O 1.21281 * 118.24325 * 197.60414 * 23 22 21 25 25 N 1.33351 * 123.50987 * 17.58166 * 23 22 21 26 26 C 1.45822 * 124.16830 * 357.95903 * 25 23 22 27 27 C 1.46465 * 86.91753 * 330.71587 * 15 14 12 28 28 H 1.09000 * 111.44052 * 277.09896 * 27 15 14 29 29 C 1.45698 * 119.73895 * 24.90297 * 9 7 2 30 30 H 0.97003 * 119.99881 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.70429 * 356.12065 * 10 9 7 32 32 H 1.08997 * 109.70392 * 116.74426 * 10 9 7 33 33 H 1.08999 * 108.88502 * 180.92008 * 11 10 9 34 34 H 1.08999 * 110.99130 * 60.28719 * 11 10 9 35 35 H 1.09006 * 114.25169 * 159.76374 * 14 12 11 36 36 H 1.09003 * 113.04137 * 28.90746 * 14 12 11 37 37 H 1.09005 * 109.46976 * 299.99494 * 18 16 15 38 38 H 1.08998 * 109.47778 * 60.00047 * 18 16 15 39 39 H 1.08992 * 109.67645 * 307.01826 * 21 19 18 40 40 H 1.08998 * 109.67463 * 67.55978 * 21 19 18 41 41 H 1.08998 * 109.40111 * 71.23418 * 22 21 19 42 42 H 1.09006 * 109.39690 * 191.05870 * 22 21 19 43 43 H 0.97004 * 117.94952 * 177.77733 * 25 23 22 44 44 H 1.08995 * 109.17682 * 258.53886 * 26 25 23 45 45 H 1.09001 * 109.45881 * 139.13947 * 26 25 23 46 46 H 1.09003 * 108.78552 * 260.88797 * 29 9 7 47 47 H 1.08990 * 108.78839 * 19.21644 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0646 -1.2171 0.2328 9 7 1.3592 -2.3685 -0.3027 10 6 1.8821 -3.6431 0.1968 11 6 2.1493 -4.5455 -1.0217 12 6 0.8292 -4.7518 -1.7686 13 1 0.2028 -5.5477 -1.3659 14 6 1.0479 -4.8139 -3.2795 15 7 0.9707 -3.3431 -3.2815 16 6 1.4817 -2.3376 -4.0195 17 8 1.2111 -1.1872 -3.7470 18 6 2.3883 -2.6429 -5.1838 19 6 2.8250 -1.3349 -5.8468 20 1 3.2805 -0.6819 -5.1024 21 6 3.8388 -1.6346 -6.9576 22 6 4.3935 -0.3060 -7.4775 23 6 3.2642 0.6397 -7.7703 24 8 3.4869 1.5969 -8.4809 25 7 2.0297 0.4829 -7.2912 26 6 1.6093 -0.6411 -6.4627 27 6 0.0880 -3.4667 -2.1193 28 1 -0.9403 -3.6678 -2.4197 29 6 0.1556 -2.3327 -1.1229 30 1 -0.4850 0.8401 0.0004 31 1 2.8209 -3.4739 0.7241 32 1 1.1575 -4.0984 0.8719 33 1 2.5243 -5.5075 -0.6727 34 1 2.8794 -4.0911 -1.6914 35 1 0.2379 -5.2929 -3.8298 36 1 2.0304 -5.1985 -3.5530 37 1 3.2668 -3.1816 -4.8288 38 1 1.8542 -3.2566 -5.9092 39 1 4.6520 -2.2407 -6.5585 40 1 3.3461 -2.1693 -7.7696 41 1 5.0473 0.1331 -6.7240 42 1 4.9616 -0.4834 -8.3908 43 1 1.3695 1.1607 -7.5050 44 1 1.0610 -1.3542 -7.0782 45 1 0.9578 -0.2815 -5.6663 46 1 -0.7157 -2.3865 -0.4702 47 1 0.1289 -1.3882 -1.6661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084400495.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:55 Heat of formation + Delta-G solvation = -9.961611 kcal Electronic energy + Delta-G solvation = -28876.088559 eV Core-core repulsion = 25060.573571 eV Total energy + Delta-G solvation = -3815.514988 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.75071 -40.21582 -38.19352 -36.37450 -35.23449 -33.43093 -32.14346 -31.44190 -30.17071 -29.19941 -27.07613 -26.34231 -24.52701 -23.85461 -22.97680 -21.91059 -21.04406 -19.77705 -19.09221 -17.79594 -17.16455 -17.01137 -16.24050 -15.95047 -15.69793 -15.62502 -15.19749 -14.75210 -14.21456 -14.08559 -13.74867 -13.57914 -13.51344 -13.38096 -13.17287 -12.89387 -12.69098 -12.36920 -12.06535 -11.91186 -11.63217 -11.49020 -11.32941 -11.07904 -11.03622 -10.94265 -10.69455 -10.67515 -10.49627 -10.22115 -9.88820 -9.80228 -9.78308 -9.57499 -9.09690 -8.87847 -8.30759 -8.14218 -6.61229 -5.66983 -3.08694 2.63908 3.14785 3.22042 3.31318 3.47214 3.52690 3.55755 4.41116 4.50936 4.54507 4.59248 4.64949 4.68355 4.89000 5.12789 5.19932 5.27655 5.30962 5.40004 5.43563 5.47168 5.50814 5.54048 5.59268 5.62735 5.66042 5.69516 5.71661 5.87279 6.04012 6.07602 6.12246 6.22119 6.27134 6.35905 6.48897 6.56468 6.75122 6.75348 6.97059 7.33994 7.47747 7.75756 7.92724 8.19903 8.31358 8.56002 8.72357 9.34563 9.98881 10.45971 11.41121 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011437 B = 0.004869 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.654201 B = 5749.493518 C = 7375.564757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.013 3.987 3 Si 0.899 3.101 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.252 4.252 8 H 0.062 0.938 9 N -0.585 5.585 10 C 0.147 3.853 11 C -0.112 4.112 12 C -0.115 4.115 13 H 0.089 0.911 14 C 0.095 3.905 15 N -0.633 5.633 16 C 0.535 3.465 17 O -0.514 6.514 18 C -0.124 4.124 19 C -0.090 4.090 20 H 0.093 0.907 21 C -0.118 4.118 22 C -0.134 4.134 23 C 0.518 3.482 24 O -0.569 6.569 25 N -0.714 5.714 26 C 0.108 3.892 27 C 0.117 3.883 28 H 0.072 0.928 29 C 0.168 3.832 30 H 0.252 0.748 31 H 0.053 0.947 32 H 0.024 0.976 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.399 0.601 44 H 0.059 0.941 45 H 0.102 0.898 46 H 0.028 0.972 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.275 -13.043 -11.867 17.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.186 4.186 3 Si 0.729 3.271 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.382 4.382 8 H 0.079 0.921 9 N -0.308 5.308 10 C 0.020 3.980 11 C -0.152 4.152 12 C -0.134 4.134 13 H 0.107 0.893 14 C -0.029 4.029 15 N -0.370 5.370 16 C 0.324 3.676 17 O -0.389 6.389 18 C -0.165 4.165 19 C -0.109 4.109 20 H 0.111 0.889 21 C -0.156 4.156 22 C -0.174 4.174 23 C 0.306 3.694 24 O -0.449 6.449 25 N -0.365 5.365 26 C -0.016 4.016 27 C 0.013 3.987 28 H 0.089 0.911 29 C 0.042 3.958 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.234 0.766 44 H 0.077 0.923 45 H 0.120 0.880 46 H 0.046 0.954 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.387 -11.748 -12.156 17.241 hybrid contribution 0.014 0.876 -0.130 0.885 sum 3.400 -10.872 -12.286 16.754 Atomic orbital electron populations 1.70005 1.05198 1.25232 1.54406 1.24887 0.95218 0.98031 1.00439 0.86348 0.78921 0.84061 0.77727 1.21333 1.21904 1.20730 1.19081 0.91677 0.84651 1.42766 0.92063 1.43467 1.29735 1.01483 1.56092 1.20904 0.97264 0.87424 0.92396 1.21974 0.94565 0.99359 0.99276 1.22572 0.98877 0.97857 0.94106 0.89310 1.23098 1.01192 0.81585 0.96992 1.49580 1.49584 1.05869 1.31971 1.19914 0.81121 0.84157 0.82447 1.90769 1.60051 1.19254 1.68846 1.21580 1.00211 0.98312 0.96369 1.21215 0.95679 0.96580 0.97400 0.88853 1.21740 0.99079 0.96584 0.98184 1.21627 0.96681 0.95092 1.04013 1.20193 0.84094 0.86257 0.78902 1.90739 1.82814 1.32523 1.38852 1.45492 1.11864 1.26858 1.52260 1.21688 0.97238 0.88246 0.94414 1.22706 0.92658 0.96904 0.86389 0.91050 1.20175 0.88771 0.96365 0.90502 0.93835 0.92829 0.95851 0.92913 0.91979 0.90513 0.91215 0.88771 0.89352 0.90240 0.91132 0.88053 0.88226 0.76636 0.92272 0.88028 0.95446 0.87793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 10.94 55.49 0.61 -26.39 16 2 C 0.01 0.37 4.94 -17.43 -0.09 0.28 16 3 Si 0.90 23.13 29.58 -169.99 -5.03 18.10 16 4 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 5 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.25 -7.05 9.53 -15.06 -0.14 -7.20 16 8 H 0.06 1.70 7.83 -52.48 -0.41 1.29 16 9 N -0.59 -14.44 3.01 -174.39 -0.52 -14.97 16 10 C 0.15 2.91 6.49 -3.52 -0.02 2.89 16 11 C -0.11 -1.73 5.72 -26.20 -0.15 -1.88 16 12 C -0.11 -1.60 4.47 -90.99 -0.41 -2.01 16 13 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 14 C 0.09 1.09 7.76 -12.21 -0.09 0.99 16 15 N -0.63 -10.13 3.27 -191.19 -0.63 -10.76 16 16 C 0.53 9.03 7.77 -10.99 -0.09 8.95 16 17 O -0.51 -11.25 13.27 5.56 0.07 -11.18 16 18 C -0.12 -1.41 5.03 -27.89 -0.14 -1.55 16 19 C -0.09 -1.05 1.89 -90.48 -0.17 -1.22 16 20 H 0.09 1.37 7.94 -51.93 -0.41 0.96 16 21 C -0.12 -1.04 5.33 -26.51 -0.14 -1.18 16 22 C -0.13 -1.40 6.03 -28.10 -0.17 -1.57 16 23 C 0.52 7.27 7.71 -11.87 -0.09 7.18 16 24 O -0.57 -10.15 17.78 5.56 0.10 -10.06 16 25 N -0.71 -9.18 5.45 -61.34 -0.33 -9.52 16 26 C 0.11 1.32 6.12 -4.45 -0.03 1.30 16 27 C 0.12 2.08 4.09 -77.67 -0.32 1.76 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 C 0.17 4.00 4.59 -5.43 -0.02 3.98 16 30 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.05 1.06 7.87 -51.93 -0.41 0.65 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 1.05 7.64 -51.93 -0.40 0.65 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.68 8.01 -51.93 -0.42 0.26 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.40 4.88 8.80 -40.82 -0.36 4.52 16 44 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 45 H 0.10 1.54 6.19 -51.93 -0.32 1.22 16 46 H 0.03 0.72 8.00 -51.93 -0.42 0.30 16 47 H 0.10 2.92 4.94 -51.93 -0.26 2.67 16 LS Contribution 365.24 15.07 5.50 5.50 Total: -1.00 -35.68 365.24 -9.90 -45.58 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.60 Total: 2.97 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: -2.07 Total: 10.72 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -0.88 Total: -61.64 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: 0.17 Total: -21.23 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.03 Total: 18.10 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.68 -9.90 -45.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084400495.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.623 kcal (2) G-P(sol) polarization free energy of solvation -35.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds