Wall clock time and date at job start Fri Apr 10 2020 18:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00134 * 2 1 4 4 H 1.48501 * 109.47288 * 270.00294 * 3 2 1 5 5 H 1.48498 * 109.46923 * 30.00409 * 3 2 1 6 6 H 1.48501 * 109.46853 * 150.00293 * 3 2 1 7 7 C 1.38818 * 119.99611 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99418 * 194.44734 * 7 2 1 9 9 N 1.36932 * 120.00147 * 14.73371 * 7 2 1 10 10 C 1.46546 * 119.73352 * 204.63473 * 9 7 2 11 11 C 1.53956 * 107.57751 * 237.76730 * 10 9 7 12 12 C 1.53066 * 108.39337 * 299.98108 * 11 10 9 13 13 H 1.08998 * 114.44406 * 276.29645 * 12 11 10 14 14 C 1.52798 * 111.38350 * 144.15314 * 12 11 10 15 15 N 1.47282 * 87.32098 * 274.42546 * 14 12 11 16 16 C 1.34783 * 136.54143 * 150.71649 * 15 14 12 17 17 O 1.21281 * 119.99898 * 179.97438 * 16 15 14 18 18 C 1.50691 * 120.00012 * 0.02562 * 16 15 14 19 19 C 1.53003 * 109.47266 * 179.97438 * 18 16 15 20 20 H 1.08995 * 109.60196 * 54.99527 * 19 18 16 21 21 C 1.53344 * 109.60441 * 175.32107 * 19 18 16 22 22 C 1.53076 * 108.42207 * 187.28616 * 21 19 18 23 23 C 1.50174 * 109.89208 * 311.10103 * 22 21 19 24 24 O 1.21281 * 118.24325 * 197.60414 * 23 22 21 25 25 N 1.33351 * 123.50987 * 17.58166 * 23 22 21 26 26 C 1.45822 * 124.16830 * 357.95903 * 25 23 22 27 27 C 1.46465 * 86.91753 * 330.71587 * 15 14 12 28 28 H 1.09000 * 111.44052 * 277.09896 * 27 15 14 29 29 C 1.45698 * 119.73895 * 24.90297 * 9 7 2 30 30 H 0.97003 * 119.99881 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.70429 * 356.12065 * 10 9 7 32 32 H 1.08997 * 109.70392 * 116.74426 * 10 9 7 33 33 H 1.08999 * 108.88502 * 180.92008 * 11 10 9 34 34 H 1.08999 * 110.99130 * 60.28719 * 11 10 9 35 35 H 1.09006 * 114.25169 * 159.76374 * 14 12 11 36 36 H 1.09003 * 113.04137 * 28.90746 * 14 12 11 37 37 H 1.09005 * 109.46976 * 299.99494 * 18 16 15 38 38 H 1.08998 * 109.47778 * 60.00047 * 18 16 15 39 39 H 1.08992 * 109.67645 * 307.01826 * 21 19 18 40 40 H 1.08998 * 109.67463 * 67.55978 * 21 19 18 41 41 H 1.08998 * 109.40111 * 71.23418 * 22 21 19 42 42 H 1.09006 * 109.39690 * 191.05870 * 22 21 19 43 43 H 0.97004 * 117.94952 * 177.77733 * 25 23 22 44 44 H 1.08995 * 109.17682 * 258.53886 * 26 25 23 45 45 H 1.09001 * 109.45881 * 139.13947 * 26 25 23 46 46 H 1.09003 * 108.78552 * 260.88797 * 29 9 7 47 47 H 1.08990 * 108.78839 * 19.21644 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0646 -1.2171 0.2328 9 7 1.3592 -2.3685 -0.3027 10 6 1.8821 -3.6431 0.1968 11 6 2.1493 -4.5455 -1.0217 12 6 0.8292 -4.7518 -1.7686 13 1 0.2028 -5.5477 -1.3659 14 6 1.0479 -4.8139 -3.2795 15 7 0.9707 -3.3431 -3.2815 16 6 1.4817 -2.3376 -4.0195 17 8 1.2111 -1.1872 -3.7470 18 6 2.3883 -2.6429 -5.1838 19 6 2.8250 -1.3349 -5.8468 20 1 3.2805 -0.6819 -5.1024 21 6 3.8388 -1.6346 -6.9576 22 6 4.3935 -0.3060 -7.4775 23 6 3.2642 0.6397 -7.7703 24 8 3.4869 1.5969 -8.4809 25 7 2.0297 0.4829 -7.2912 26 6 1.6093 -0.6411 -6.4627 27 6 0.0880 -3.4667 -2.1193 28 1 -0.9403 -3.6678 -2.4197 29 6 0.1556 -2.3327 -1.1229 30 1 -0.4850 0.8401 0.0004 31 1 2.8209 -3.4739 0.7241 32 1 1.1575 -4.0984 0.8719 33 1 2.5243 -5.5075 -0.6727 34 1 2.8794 -4.0911 -1.6914 35 1 0.2379 -5.2929 -3.8298 36 1 2.0304 -5.1985 -3.5530 37 1 3.2668 -3.1816 -4.8288 38 1 1.8542 -3.2566 -5.9092 39 1 4.6520 -2.2407 -6.5585 40 1 3.3461 -2.1693 -7.7696 41 1 5.0473 0.1331 -6.7240 42 1 4.9616 -0.4834 -8.3908 43 1 1.3695 1.1607 -7.5050 44 1 1.0610 -1.3542 -7.0782 45 1 0.9578 -0.2815 -5.6663 46 1 -0.7157 -2.3865 -0.4702 47 1 0.1289 -1.3882 -1.6661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084400495.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:54 Heat of formation + Delta-G solvation = -36.791194 kcal Electronic energy + Delta-G solvation = -28877.251978 eV Core-core repulsion = 25060.573571 eV Total energy + Delta-G solvation = -3816.678406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.95210 -41.29623 -39.45121 -37.54197 -37.00358 -34.41926 -33.92009 -32.43038 -31.85964 -30.56841 -28.66047 -27.43228 -25.61844 -25.41385 -24.33930 -22.96169 -22.50577 -21.03239 -20.02451 -19.43628 -18.40983 -18.24791 -17.48445 -17.34347 -17.08175 -16.81576 -16.40326 -16.14030 -15.80296 -15.39248 -15.10960 -14.90286 -14.73537 -14.45013 -14.40705 -14.17055 -14.09187 -13.75562 -13.41677 -13.17985 -13.04085 -12.72532 -12.70208 -12.50582 -12.33393 -12.17025 -12.16398 -11.96728 -11.91835 -11.78514 -11.70123 -11.44504 -11.01576 -10.84967 -10.62621 -10.25511 -10.05690 -9.38563 -8.65920 -7.84969 -5.27505 1.33241 1.40544 1.43358 1.55566 1.95187 2.10044 2.31017 2.47124 3.31340 3.50112 3.54711 3.58857 3.69124 3.76155 3.80382 3.95214 4.05880 4.31191 4.35236 4.40137 4.50812 4.54865 4.62268 4.65318 4.66576 4.72605 4.75378 4.80672 4.83246 4.89550 4.95348 4.97467 5.00753 5.10992 5.17188 5.20095 5.35601 5.38679 5.48228 5.57873 5.70055 5.75245 5.87194 6.30537 6.40612 7.11838 7.13436 7.21004 7.51012 7.98924 8.36134 9.18920 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011437 B = 0.004869 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.654201 B = 5749.493518 C = 7375.564757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.042 4.042 3 Si 0.949 3.051 4 H -0.303 1.303 5 H -0.293 1.293 6 H -0.263 1.263 7 C -0.250 4.250 8 H 0.060 0.940 9 N -0.602 5.602 10 C 0.136 3.864 11 C -0.100 4.100 12 C -0.108 4.108 13 H 0.122 0.878 14 C 0.113 3.887 15 N -0.641 5.641 16 C 0.518 3.482 17 O -0.582 6.582 18 C -0.107 4.107 19 C -0.089 4.089 20 H 0.052 0.948 21 C -0.104 4.104 22 C -0.132 4.132 23 C 0.510 3.490 24 O -0.616 6.616 25 N -0.713 5.713 26 C 0.111 3.889 27 C 0.102 3.898 28 H 0.086 0.914 29 C 0.182 3.818 30 H 0.242 0.758 31 H 0.047 0.953 32 H 0.027 0.973 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.120 0.880 43 H 0.396 0.604 44 H 0.089 0.911 45 H 0.064 0.936 46 H -0.014 1.014 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.049 -17.782 -13.663 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.237 4.237 3 Si 0.779 3.221 4 H -0.231 1.231 5 H -0.220 1.220 6 H -0.188 1.188 7 C -0.380 4.380 8 H 0.078 0.922 9 N -0.325 5.325 10 C 0.011 3.989 11 C -0.139 4.139 12 C -0.126 4.126 13 H 0.140 0.860 14 C -0.008 4.008 15 N -0.377 5.377 16 C 0.310 3.690 17 O -0.462 6.462 18 C -0.147 4.147 19 C -0.108 4.108 20 H 0.071 0.929 21 C -0.141 4.141 22 C -0.172 4.172 23 C 0.299 3.701 24 O -0.500 6.500 25 N -0.362 5.362 26 C -0.013 4.013 27 C -0.003 4.003 28 H 0.104 0.896 29 C 0.056 3.944 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.131 0.869 36 H 0.120 0.880 37 H 0.137 0.863 38 H 0.147 0.853 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.119 0.881 42 H 0.138 0.862 43 H 0.231 0.769 44 H 0.107 0.893 45 H 0.082 0.918 46 H 0.004 0.996 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.182 -16.594 -13.927 22.275 hybrid contribution -0.596 2.343 0.545 2.478 sum 4.587 -14.251 -13.382 20.080 Atomic orbital electron populations 1.70173 1.06353 1.24887 1.56550 1.25513 0.95866 1.00678 1.01686 0.85525 0.78721 0.81167 0.76639 1.23147 1.21982 1.18767 1.19370 0.91740 0.86180 1.40748 0.92249 1.43719 1.29642 1.02338 1.56824 1.21174 0.96678 0.86218 0.94794 1.21821 0.95398 0.99852 0.96800 1.22596 0.97622 0.95850 0.96579 0.85999 1.23271 1.04433 0.78238 0.94827 1.49787 1.48662 1.08361 1.30846 1.21055 0.81168 0.83405 0.83399 1.90765 1.62378 1.22214 1.70817 1.21578 1.00089 0.98408 0.94604 1.21181 0.95844 0.96283 0.97530 0.92899 1.21713 0.98987 0.95870 0.97509 1.21699 0.95250 0.95165 1.05044 1.20952 0.84852 0.86308 0.78018 1.90710 1.83509 1.34639 1.41128 1.45604 1.11874 1.27051 1.51668 1.21674 0.97544 0.88342 0.93700 1.22649 0.94853 0.96494 0.86307 0.89628 1.19766 0.87024 0.97045 0.90586 0.94859 0.93437 0.95460 0.88575 0.93173 0.86866 0.87963 0.86286 0.85307 0.87443 0.88704 0.88136 0.86191 0.76929 0.89317 0.91768 0.99623 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.47 10.94 21.65 0.24 -59.23 16 2 C -0.04 -2.55 4.94 84.86 0.42 -2.14 16 3 Si 0.95 49.93 29.58 68.60 2.03 51.96 16 4 H -0.30 -16.63 7.11 99.48 0.71 -15.92 16 5 H -0.29 -15.30 7.11 99.48 0.71 -14.59 16 6 H -0.26 -12.87 7.11 99.48 0.71 -12.17 16 7 C -0.25 -14.47 9.53 84.04 0.80 -13.67 16 8 H 0.06 3.39 7.83 -2.91 -0.02 3.36 16 9 N -0.60 -30.48 3.01 -705.66 -2.12 -32.60 16 10 C 0.14 5.26 6.49 86.69 0.56 5.82 16 11 C -0.10 -2.68 5.72 30.94 0.18 -2.51 16 12 C -0.11 -2.50 4.47 -11.02 -0.05 -2.55 16 13 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 14 C 0.11 1.90 7.76 80.66 0.63 2.52 16 15 N -0.64 -18.90 3.27 -877.18 -2.87 -21.77 16 16 C 0.52 17.00 7.77 87.65 0.68 17.68 16 17 O -0.58 -26.91 13.27 -3.03 -0.04 -26.95 16 18 C -0.11 -2.02 5.03 29.85 0.15 -1.87 16 19 C -0.09 -1.93 1.89 -10.70 -0.02 -1.95 16 20 H 0.05 1.58 7.94 -2.39 -0.02 1.57 16 21 C -0.10 -1.40 5.33 30.73 0.16 -1.24 16 22 C -0.13 -2.48 6.03 29.71 0.18 -2.30 16 23 C 0.51 14.24 7.71 87.71 0.68 14.92 16 24 O -0.62 -22.48 17.78 -3.03 -0.05 -22.53 16 25 N -0.71 -18.69 5.45 -467.18 -2.55 -21.23 16 26 C 0.11 2.69 6.12 86.48 0.53 3.22 16 27 C 0.10 3.50 4.09 38.70 0.16 3.65 16 28 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 29 C 0.18 9.09 4.59 85.91 0.39 9.48 16 30 H 0.24 15.24 8.31 -92.71 -0.77 14.47 16 31 H 0.05 1.84 7.87 -2.39 -0.02 1.82 16 32 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.05 1.49 7.64 -2.39 -0.02 1.47 16 35 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.10 1.17 8.01 -2.39 -0.02 1.15 16 37 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.13 1.45 8.11 -2.39 -0.02 1.43 16 39 H 0.11 0.95 8.14 -2.39 -0.02 0.94 16 40 H 0.09 0.92 8.13 -2.39 -0.02 0.90 16 41 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.40 10.31 8.80 -92.71 -0.82 9.50 16 44 H 0.09 1.62 8.09 -2.39 -0.02 1.60 16 45 H 0.06 2.09 6.19 -2.39 -0.01 2.07 16 46 H -0.01 -0.78 8.00 -2.39 -0.02 -0.80 16 47 H 0.05 3.18 4.94 -2.39 -0.01 3.17 16 Total: -1.00 -89.41 365.24 0.24 -89.17 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.16 Total: 14.12 kcal Atomic # 6 Polarization: 23.62 SS G_CDS: 5.45 Total: 29.07 kcal Atomic # 7 Polarization: -127.54 SS G_CDS: -7.30 Total: -134.83 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: -0.09 Total: -49.49 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 2.03 Total: 51.96 kcal Total: -89.41 0.24 -89.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084400495.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.376 kcal (2) G-P(sol) polarization free energy of solvation -89.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds