Wall clock time and date at job start Fri Apr 10 2020 18:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 119.99981 * 2 1 4 4 H 1.48496 * 109.47452 * 240.00215 * 3 2 1 5 5 H 1.48498 * 109.47117 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47073 * 119.99887 * 3 2 1 7 7 C 1.38810 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99469 * 194.41412 * 7 2 1 9 9 N 1.36938 * 120.00100 * 14.41430 * 7 2 1 10 10 C 1.46542 * 119.73775 * 205.18281 * 9 7 2 11 11 C 1.53148 * 108.25041 * 236.44396 * 10 9 7 12 12 C 1.53068 * 109.21231 * 301.58701 * 11 10 9 13 13 H 1.08997 * 113.84073 * 274.48505 * 12 11 10 14 14 C 1.54081 * 111.39215 * 142.39540 * 12 11 10 15 15 N 1.47288 * 87.60769 * 273.97495 * 14 12 11 16 16 C 1.34778 * 136.53955 * 151.37067 * 15 14 12 17 17 O 1.21283 * 119.99590 * 179.97438 * 16 15 14 18 18 C 1.50699 * 120.00212 * 359.97438 * 16 15 14 19 19 C 1.53003 * 109.47052 * 180.02562 * 18 16 15 20 20 H 1.09000 * 109.73595 * 304.59722 * 19 18 16 21 21 C 1.53348 * 109.60055 * 184.18446 * 19 18 16 22 22 C 1.53069 * 108.42238 * 172.71169 * 21 19 18 23 23 C 1.50184 * 109.88991 * 48.90524 * 22 21 19 24 24 O 1.21274 * 118.24732 * 162.43787 * 23 22 21 25 25 N 1.33093 * 123.42342 * 342.22846 * 23 22 21 26 26 C 1.45756 * 124.30914 * 2.60833 * 25 23 22 27 27 C 1.46467 * 86.91324 * 331.62031 * 15 14 12 28 28 H 1.08997 * 111.44223 * 276.12563 * 27 15 14 29 29 C 1.45696 * 119.73952 * 25.19766 * 9 7 2 30 30 H 0.96996 * 119.99389 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.71019 * 116.74692 * 10 9 7 32 32 H 1.09004 * 109.70802 * 356.13009 * 10 9 7 33 33 H 1.08998 * 109.51320 * 181.66345 * 11 10 9 34 34 H 1.08995 * 109.55766 * 61.53204 * 11 10 9 35 35 H 1.09003 * 113.52706 * 159.28705 * 14 12 11 36 36 H 1.08999 * 113.59196 * 28.66797 * 14 12 11 37 37 H 1.09004 * 109.47011 * 59.99962 * 18 16 15 38 38 H 1.08998 * 109.47279 * 300.00250 * 18 16 15 39 39 H 1.08992 * 109.67695 * 292.45075 * 21 19 18 40 40 H 1.09004 * 109.67197 * 52.94959 * 21 19 18 41 41 H 1.09002 * 109.40529 * 169.02958 * 22 21 19 42 42 H 1.08995 * 109.40515 * 288.86195 * 22 21 19 43 43 H 0.96999 * 117.74315 * 182.38578 * 25 23 22 44 44 H 1.08992 * 109.30119 * 220.39146 * 26 25 23 45 45 H 1.09001 * 109.29852 * 100.80411 * 26 25 23 46 46 H 1.08997 * 108.79385 * 260.87694 * 29 9 7 47 47 H 1.08995 * 108.78880 * 19.20858 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0648 -1.2169 0.2323 9 7 1.3579 -2.3693 -0.2963 10 6 1.8765 -3.6413 0.2142 11 6 2.1186 -4.5730 -0.9769 12 6 0.8057 -4.7676 -1.7393 13 1 0.1765 -5.5618 -1.3377 14 6 1.0431 -4.8295 -3.2605 15 7 0.9674 -3.3586 -3.2699 16 6 1.4794 -2.3574 -4.0129 17 8 1.2099 -1.2054 -3.7462 18 6 2.3865 -2.6694 -5.1751 19 6 2.8254 -1.3652 -5.8440 20 1 1.9481 -0.7856 -6.1313 21 6 3.6631 -1.6820 -7.0888 22 6 3.9327 -0.3737 -7.8362 23 6 4.4341 0.6683 -6.8778 24 8 4.9966 1.6422 -7.3315 25 7 4.2897 0.5803 -5.5577 26 6 3.6813 -0.5526 -4.8715 27 6 0.0897 -3.4752 -2.1032 28 1 -0.9431 -3.6599 -2.3984 29 6 0.1540 -2.3366 -1.1162 30 1 -0.4849 0.8401 0.0004 31 1 1.1487 -4.0902 0.8901 32 1 2.8138 -3.4702 0.7436 33 1 2.4774 -5.5375 -0.6176 34 1 2.8627 -4.1318 -1.6399 35 1 0.2325 -5.3105 -3.8081 36 1 2.0248 -5.2165 -3.5334 37 1 1.8524 -3.2869 -5.8974 38 1 3.2645 -3.2068 -4.8167 39 1 4.6081 -2.1352 -6.7895 40 1 3.1154 -2.3681 -7.7348 41 1 4.6823 -0.5457 -8.6086 42 1 3.0098 -0.0241 -8.2988 43 1 4.6139 1.3180 -5.0178 44 1 3.0541 -0.1870 -4.0586 45 1 4.4656 -1.1898 -4.4629 46 1 -0.7171 -2.3862 -0.4630 47 1 0.1280 -1.3948 -1.6642 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084400496.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:58 Heat of formation + Delta-G solvation = -11.541446 kcal Electronic energy + Delta-G solvation = -29061.104288 eV Core-core repulsion = 25245.520793 eV Total energy + Delta-G solvation = -3815.583495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.70669 -40.17450 -38.17527 -36.34614 -35.23847 -33.38498 -32.18965 -31.42777 -30.18245 -29.22108 -27.08670 -26.30932 -24.48987 -23.87224 -22.95176 -21.86120 -21.09002 -19.74825 -19.06888 -17.78572 -17.10321 -17.02003 -16.16887 -15.90409 -15.69102 -15.64798 -15.20010 -14.67186 -14.24384 -14.07796 -13.77447 -13.56321 -13.47735 -13.32600 -13.15939 -12.87714 -12.74697 -12.35438 -12.08514 -11.90648 -11.62525 -11.47379 -11.30624 -11.09717 -11.03025 -10.93082 -10.68619 -10.66233 -10.51333 -10.23268 -9.90426 -9.80924 -9.71882 -9.59060 -9.04075 -8.86886 -8.32411 -8.14081 -6.62013 -5.68293 -3.10303 2.69748 3.14130 3.22288 3.39760 3.44649 3.51089 3.51656 4.42908 4.52457 4.56780 4.57244 4.64468 4.67576 4.89519 5.12842 5.22471 5.30916 5.34082 5.40030 5.44493 5.48867 5.52560 5.56566 5.58783 5.61626 5.66946 5.69744 5.73207 5.86239 6.09112 6.11132 6.17505 6.23252 6.28254 6.35043 6.49528 6.56263 6.75215 6.83140 6.96007 7.44278 7.47079 7.74398 7.91260 8.26757 8.31301 8.54890 8.71663 9.33178 9.97420 10.45033 11.39848 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011160 B = 0.005330 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.277137 B = 5252.364567 C = 7093.123033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.013 3.987 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.253 4.253 8 H 0.061 0.939 9 N -0.584 5.584 10 C 0.148 3.852 11 C -0.114 4.114 12 C -0.114 4.114 13 H 0.091 0.909 14 C 0.095 3.905 15 N -0.633 5.633 16 C 0.536 3.464 17 O -0.514 6.514 18 C -0.125 4.125 19 C -0.087 4.087 20 H 0.089 0.911 21 C -0.119 4.119 22 C -0.133 4.133 23 C 0.516 3.484 24 O -0.572 6.572 25 N -0.712 5.712 26 C 0.105 3.895 27 C 0.119 3.881 28 H 0.069 0.931 29 C 0.167 3.833 30 H 0.252 0.748 31 H 0.019 0.981 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.400 0.600 44 H 0.108 0.892 45 H 0.062 0.938 46 H 0.028 0.972 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.441 -13.076 -11.575 17.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.186 4.186 3 Si 0.731 3.269 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.383 4.383 8 H 0.079 0.921 9 N -0.307 5.307 10 C 0.021 3.979 11 C -0.154 4.154 12 C -0.133 4.133 13 H 0.109 0.891 14 C -0.028 4.028 15 N -0.369 5.369 16 C 0.325 3.675 17 O -0.389 6.389 18 C -0.165 4.165 19 C -0.106 4.106 20 H 0.107 0.893 21 C -0.157 4.157 22 C -0.173 4.173 23 C 0.303 3.697 24 O -0.452 6.452 25 N -0.361 5.361 26 C -0.019 4.019 27 C 0.015 3.985 28 H 0.087 0.913 29 C 0.041 3.959 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.235 0.765 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.046 0.954 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.461 -11.784 -11.933 17.124 hybrid contribution 0.377 0.889 0.181 0.983 sum 3.838 -10.894 -11.752 16.478 Atomic orbital electron populations 1.69994 1.05204 1.25383 1.54205 1.24904 0.95212 0.98025 1.00459 0.86408 0.78919 0.83787 0.77780 1.21084 1.21755 1.21245 1.19023 0.91588 0.84585 1.43082 0.92107 1.43456 1.29692 1.01538 1.56014 1.20722 0.97369 0.87322 0.92491 1.21834 0.94850 0.99294 0.99414 1.22695 0.98886 0.97762 0.93951 0.89122 1.23307 1.01132 0.81563 0.96838 1.49482 1.49808 1.05962 1.31676 1.19900 0.81062 0.84167 0.82409 1.90766 1.59916 1.19076 1.69189 1.21589 0.99969 0.98393 0.96580 1.21201 0.99014 0.95749 0.94624 0.89257 1.21752 1.00722 0.96737 0.96462 1.21614 1.03635 0.94188 0.97876 1.20099 0.78705 0.87583 0.83297 1.90737 1.44307 1.33526 1.76654 1.45465 1.60789 1.22943 1.06948 1.21749 0.96572 0.87760 0.95827 1.22491 0.92755 0.96896 0.86355 0.91268 1.20162 0.88779 0.96327 0.90647 0.93747 0.96351 0.92666 0.92758 0.92168 0.90599 0.91145 0.88979 0.89097 0.91023 0.90398 0.88290 0.88279 0.76498 0.87423 0.91970 0.95416 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 10.94 55.49 0.61 -26.18 16 2 C 0.01 0.36 4.94 -17.43 -0.09 0.28 16 3 Si 0.90 22.74 29.58 -169.99 -5.03 17.71 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.25 -6.96 9.53 -15.06 -0.14 -7.10 16 8 H 0.06 1.65 7.83 -52.49 -0.41 1.24 16 9 N -0.58 -14.24 3.03 -175.06 -0.53 -14.77 16 10 C 0.15 2.90 6.46 -3.94 -0.03 2.87 16 11 C -0.11 -1.75 5.69 -26.62 -0.15 -1.90 16 12 C -0.11 -1.57 4.57 -90.45 -0.41 -1.99 16 13 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 14 C 0.10 1.09 7.78 -11.54 -0.09 1.00 16 15 N -0.63 -10.12 3.34 -188.03 -0.63 -10.74 16 16 C 0.54 9.03 7.77 -10.99 -0.09 8.94 16 17 O -0.51 -11.21 13.26 5.55 0.07 -11.13 16 18 C -0.12 -1.41 5.03 -27.88 -0.14 -1.55 16 19 C -0.09 -1.02 1.90 -90.48 -0.17 -1.19 16 20 H 0.09 1.19 7.96 -51.93 -0.41 0.77 16 21 C -0.12 -1.04 5.33 -26.52 -0.14 -1.18 16 22 C -0.13 -1.37 6.03 -28.10 -0.17 -1.54 16 23 C 0.52 7.52 7.71 -11.98 -0.09 7.42 16 24 O -0.57 -10.51 17.78 5.56 0.10 -10.41 16 25 N -0.71 -10.18 5.43 -61.45 -0.33 -10.52 16 26 C 0.10 1.48 6.11 -4.48 -0.03 1.45 16 27 C 0.12 2.11 3.98 -77.96 -0.31 1.80 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 C 0.17 3.95 4.59 -5.57 -0.03 3.93 16 30 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 1.08 7.87 -51.93 -0.41 0.67 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.99 7.68 -51.93 -0.40 0.60 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.91 8.12 -51.93 -0.42 0.49 16 39 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.40 5.78 8.79 -40.82 -0.36 5.42 16 44 H 0.11 1.95 6.17 -51.93 -0.32 1.63 16 45 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 46 H 0.03 0.72 8.00 -51.93 -0.42 0.31 16 47 H 0.10 2.91 4.95 -51.93 -0.26 2.65 16 LS Contribution 365.32 15.07 5.51 5.51 Total: -1.00 -34.93 365.32 -9.91 -44.85 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.60 Total: 4.45 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: -2.07 Total: 11.25 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -0.89 Total: -62.21 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: 0.17 Total: -21.55 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.03 Total: 17.71 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.93 -9.91 -44.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084400496.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.306 kcal (2) G-P(sol) polarization free energy of solvation -34.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds