Wall clock time and date at job start Fri Apr 10 2020 18:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 119.99981 * 2 1 4 4 H 1.48496 * 109.47452 * 240.00215 * 3 2 1 5 5 H 1.48498 * 109.47117 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47073 * 119.99887 * 3 2 1 7 7 C 1.38810 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99469 * 194.41412 * 7 2 1 9 9 N 1.36938 * 120.00100 * 14.41430 * 7 2 1 10 10 C 1.46542 * 119.73775 * 205.18281 * 9 7 2 11 11 C 1.53148 * 108.25041 * 236.44396 * 10 9 7 12 12 C 1.53068 * 109.21231 * 301.58701 * 11 10 9 13 13 H 1.08997 * 113.84073 * 274.48505 * 12 11 10 14 14 C 1.54081 * 111.39215 * 142.39540 * 12 11 10 15 15 N 1.47288 * 87.60769 * 273.97495 * 14 12 11 16 16 C 1.34778 * 136.53955 * 151.37067 * 15 14 12 17 17 O 1.21283 * 119.99590 * 179.97438 * 16 15 14 18 18 C 1.50699 * 120.00212 * 359.97438 * 16 15 14 19 19 C 1.53003 * 109.47052 * 180.02562 * 18 16 15 20 20 H 1.09000 * 109.73595 * 304.59722 * 19 18 16 21 21 C 1.53348 * 109.60055 * 184.18446 * 19 18 16 22 22 C 1.53069 * 108.42238 * 172.71169 * 21 19 18 23 23 C 1.50184 * 109.88991 * 48.90524 * 22 21 19 24 24 O 1.21274 * 118.24732 * 162.43787 * 23 22 21 25 25 N 1.33093 * 123.42342 * 342.22846 * 23 22 21 26 26 C 1.45756 * 124.30914 * 2.60833 * 25 23 22 27 27 C 1.46467 * 86.91324 * 331.62031 * 15 14 12 28 28 H 1.08997 * 111.44223 * 276.12563 * 27 15 14 29 29 C 1.45696 * 119.73952 * 25.19766 * 9 7 2 30 30 H 0.96996 * 119.99389 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.71019 * 116.74692 * 10 9 7 32 32 H 1.09004 * 109.70802 * 356.13009 * 10 9 7 33 33 H 1.08998 * 109.51320 * 181.66345 * 11 10 9 34 34 H 1.08995 * 109.55766 * 61.53204 * 11 10 9 35 35 H 1.09003 * 113.52706 * 159.28705 * 14 12 11 36 36 H 1.08999 * 113.59196 * 28.66797 * 14 12 11 37 37 H 1.09004 * 109.47011 * 59.99962 * 18 16 15 38 38 H 1.08998 * 109.47279 * 300.00250 * 18 16 15 39 39 H 1.08992 * 109.67695 * 292.45075 * 21 19 18 40 40 H 1.09004 * 109.67197 * 52.94959 * 21 19 18 41 41 H 1.09002 * 109.40529 * 169.02958 * 22 21 19 42 42 H 1.08995 * 109.40515 * 288.86195 * 22 21 19 43 43 H 0.96999 * 117.74315 * 182.38578 * 25 23 22 44 44 H 1.08992 * 109.30119 * 220.39146 * 26 25 23 45 45 H 1.09001 * 109.29852 * 100.80411 * 26 25 23 46 46 H 1.08997 * 108.79385 * 260.87694 * 29 9 7 47 47 H 1.08995 * 108.78880 * 19.20858 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0648 -1.2169 0.2323 9 7 1.3579 -2.3693 -0.2963 10 6 1.8765 -3.6413 0.2142 11 6 2.1186 -4.5730 -0.9769 12 6 0.8057 -4.7676 -1.7393 13 1 0.1765 -5.5618 -1.3377 14 6 1.0431 -4.8295 -3.2605 15 7 0.9674 -3.3586 -3.2699 16 6 1.4794 -2.3574 -4.0129 17 8 1.2099 -1.2054 -3.7462 18 6 2.3865 -2.6694 -5.1751 19 6 2.8254 -1.3652 -5.8440 20 1 1.9481 -0.7856 -6.1313 21 6 3.6631 -1.6820 -7.0888 22 6 3.9327 -0.3737 -7.8362 23 6 4.4341 0.6683 -6.8778 24 8 4.9966 1.6422 -7.3315 25 7 4.2897 0.5803 -5.5577 26 6 3.6813 -0.5526 -4.8715 27 6 0.0897 -3.4752 -2.1032 28 1 -0.9431 -3.6599 -2.3984 29 6 0.1540 -2.3366 -1.1162 30 1 -0.4849 0.8401 0.0004 31 1 1.1487 -4.0902 0.8901 32 1 2.8138 -3.4702 0.7436 33 1 2.4774 -5.5375 -0.6176 34 1 2.8627 -4.1318 -1.6399 35 1 0.2325 -5.3105 -3.8081 36 1 2.0248 -5.2165 -3.5334 37 1 1.8524 -3.2869 -5.8974 38 1 3.2645 -3.2068 -4.8167 39 1 4.6081 -2.1352 -6.7895 40 1 3.1154 -2.3681 -7.7348 41 1 4.6823 -0.5457 -8.6086 42 1 3.0098 -0.0241 -8.2988 43 1 4.6139 1.3180 -5.0178 44 1 3.0541 -0.1870 -4.0586 45 1 4.4656 -1.1898 -4.4629 46 1 -0.7171 -2.3862 -0.4630 47 1 0.1280 -1.3948 -1.6642 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084400496.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:58 Heat of formation + Delta-G solvation = -37.798337 kcal Electronic energy + Delta-G solvation = -29062.242872 eV Core-core repulsion = 25245.520793 eV Total energy + Delta-G solvation = -3816.722079 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.91170 -41.30721 -39.44653 -37.55001 -36.98692 -34.43133 -33.94823 -32.41926 -31.87413 -30.59638 -28.66364 -27.44261 -25.62504 -25.40898 -24.31050 -22.94405 -22.54264 -21.00799 -20.02525 -19.42932 -18.41611 -18.24932 -17.52861 -17.28581 -16.95817 -16.91500 -16.44413 -16.12120 -15.69491 -15.51604 -15.12798 -14.89311 -14.72860 -14.45518 -14.36191 -14.14762 -14.12830 -13.78375 -13.41911 -13.14654 -13.03473 -12.76425 -12.65659 -12.48885 -12.34466 -12.21015 -12.14648 -11.97279 -11.92809 -11.77638 -11.65580 -11.43256 -11.01678 -10.83963 -10.62034 -10.26296 -10.09157 -9.38463 -8.65129 -7.84450 -5.27167 1.34288 1.40241 1.42983 1.56791 1.94909 2.10238 2.30202 2.47456 3.31944 3.50703 3.53154 3.58676 3.69263 3.76467 3.80768 3.95588 4.04751 4.30361 4.34921 4.41213 4.53027 4.53840 4.62453 4.65101 4.70154 4.73189 4.77732 4.79294 4.84270 4.90706 4.96558 4.96968 5.00995 5.11501 5.16683 5.21359 5.35378 5.38589 5.47769 5.58153 5.64610 5.75187 5.87328 6.33257 6.41011 7.11069 7.13623 7.21421 7.50609 7.99033 8.37002 9.19567 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011160 B = 0.005330 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.277137 B = 5252.364567 C = 7093.123033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.042 4.042 3 Si 0.950 3.050 4 H -0.288 1.288 5 H -0.300 1.300 6 H -0.271 1.271 7 C -0.250 4.250 8 H 0.060 0.940 9 N -0.600 5.600 10 C 0.137 3.863 11 C -0.102 4.102 12 C -0.107 4.107 13 H 0.124 0.876 14 C 0.114 3.886 15 N -0.641 5.641 16 C 0.519 3.481 17 O -0.581 6.581 18 C -0.108 4.108 19 C -0.083 4.083 20 H 0.066 0.934 21 C -0.104 4.104 22 C -0.129 4.129 23 C 0.509 3.491 24 O -0.618 6.618 25 N -0.714 5.714 26 C 0.109 3.891 27 C 0.104 3.896 28 H 0.081 0.919 29 C 0.182 3.818 30 H 0.242 0.758 31 H 0.021 0.979 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.133 0.867 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.109 0.891 43 H 0.392 0.608 44 H 0.058 0.942 45 H 0.075 0.925 46 H -0.015 1.015 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.850 -17.834 -13.975 23.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.237 4.237 3 Si 0.780 3.220 4 H -0.215 1.215 5 H -0.227 1.227 6 H -0.196 1.196 7 C -0.380 4.380 8 H 0.078 0.922 9 N -0.324 5.324 10 C 0.012 3.988 11 C -0.141 4.141 12 C -0.126 4.126 13 H 0.141 0.859 14 C -0.007 4.007 15 N -0.376 5.376 16 C 0.310 3.690 17 O -0.461 6.461 18 C -0.148 4.148 19 C -0.103 4.103 20 H 0.085 0.915 21 C -0.141 4.141 22 C -0.168 4.168 23 C 0.298 3.702 24 O -0.502 6.502 25 N -0.362 5.362 26 C -0.015 4.015 27 C -0.001 4.001 28 H 0.099 0.901 29 C 0.055 3.945 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.151 0.849 38 H 0.134 0.866 39 H 0.105 0.895 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.127 0.873 43 H 0.226 0.774 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.003 0.997 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.891 -16.648 -14.322 22.499 hybrid contribution -0.083 2.377 1.065 2.606 sum 4.808 -14.271 -13.256 20.063 Atomic orbital electron populations 1.70173 1.06412 1.24953 1.56502 1.25525 0.95819 1.00697 1.01668 0.85599 0.77793 0.80678 0.77955 1.21452 1.22673 1.19646 1.19316 0.91688 0.86046 1.40970 0.92185 1.43699 1.29564 1.02396 1.56715 1.20982 0.96768 0.86222 0.94796 1.21694 0.95599 0.99715 0.97051 1.22733 0.97749 0.95683 0.96411 0.85852 1.23473 1.04364 0.78244 0.94646 1.49690 1.48893 1.08461 1.30556 1.21059 0.81137 0.83421 0.83354 1.90763 1.62220 1.22010 1.71111 1.21599 0.99812 0.98495 0.94859 1.21182 0.98158 0.95483 0.95445 0.91514 1.21729 1.01204 0.96314 0.94896 1.21700 1.04388 0.93562 0.97162 1.21009 0.77737 0.88029 0.83441 1.90709 1.46522 1.35692 1.77235 1.45613 1.60352 1.22907 1.07343 1.21664 0.96515 0.87816 0.95501 1.22439 0.94784 0.96541 0.86346 0.90132 1.19748 0.87052 0.97021 0.90656 0.94889 0.96114 0.93215 0.88449 0.93241 0.87046 0.87825 0.84875 0.86590 0.89533 0.86553 0.86253 0.87294 0.77448 0.92367 0.90682 0.99682 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.32 10.94 21.65 0.24 -59.08 16 2 C -0.04 -2.51 4.94 84.86 0.42 -2.09 16 3 Si 0.95 49.39 29.58 68.60 2.03 51.42 16 4 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 5 H -0.30 -15.88 7.11 99.48 0.71 -15.18 16 6 H -0.27 -13.25 7.11 99.48 0.71 -12.55 16 7 C -0.25 -14.30 9.53 84.03 0.80 -13.49 16 8 H 0.06 3.37 7.83 -2.91 -0.02 3.34 16 9 N -0.60 -30.17 3.03 -707.77 -2.14 -32.31 16 10 C 0.14 5.28 6.46 86.42 0.56 5.84 16 11 C -0.10 -2.71 5.69 30.67 0.17 -2.53 16 12 C -0.11 -2.49 4.57 -10.68 -0.05 -2.54 16 13 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 14 C 0.11 1.91 7.78 81.09 0.63 2.54 16 15 N -0.64 -18.93 3.34 -867.20 -2.90 -21.82 16 16 C 0.52 16.98 7.77 87.66 0.68 17.66 16 17 O -0.58 -26.78 13.26 -3.04 -0.04 -26.82 16 18 C -0.11 -2.02 5.03 29.85 0.15 -1.87 16 19 C -0.08 -1.78 1.90 -10.70 -0.02 -1.80 16 20 H 0.07 1.75 7.96 -2.39 -0.02 1.73 16 21 C -0.10 -1.35 5.33 30.73 0.16 -1.18 16 22 C -0.13 -2.29 6.03 29.71 0.18 -2.11 16 23 C 0.51 14.69 7.71 87.76 0.68 15.36 16 24 O -0.62 -23.12 17.78 -3.01 -0.05 -23.17 16 25 N -0.71 -21.10 5.43 -467.66 -2.54 -23.64 16 26 C 0.11 3.11 6.11 86.49 0.53 3.64 16 27 C 0.10 3.58 3.98 38.51 0.15 3.74 16 28 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 29 C 0.18 9.04 4.59 85.82 0.39 9.44 16 30 H 0.24 15.24 8.31 -92.71 -0.77 14.47 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 1.92 7.87 -2.38 -0.02 1.90 16 33 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.05 1.44 7.68 -2.39 -0.02 1.42 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.10 1.17 8.05 -2.39 -0.02 1.15 16 37 H 0.13 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.12 1.66 8.12 -2.39 -0.02 1.64 16 39 H 0.09 0.94 8.13 -2.39 -0.02 0.93 16 40 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.12 1.70 8.14 -2.39 -0.02 1.69 16 42 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.39 12.19 8.79 -92.71 -0.82 11.38 16 44 H 0.06 2.29 6.17 -2.39 -0.01 2.27 16 45 H 0.08 1.90 8.10 -2.39 -0.02 1.88 16 46 H -0.01 -0.82 8.00 -2.39 -0.02 -0.84 16 47 H 0.05 3.20 4.95 -2.39 -0.01 3.19 16 Total: -1.00 -88.39 365.32 0.19 -88.20 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.16 Total: 16.63 kcal Atomic # 6 Polarization: 25.16 SS G_CDS: 5.44 Total: 30.60 kcal Atomic # 7 Polarization: -129.51 SS G_CDS: -7.34 Total: -136.86 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -0.09 Total: -50.00 kcal Atomic # 14 Polarization: 49.39 SS G_CDS: 2.03 Total: 51.42 kcal Total: -88.39 0.19 -88.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084400496.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.403 kcal (2) G-P(sol) polarization free energy of solvation -88.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds