Wall clock time and date at job start Fri Apr 10 2020 18:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00393 * 2 1 4 4 H 1.48503 * 109.46991 * 275.00132 * 3 2 1 5 5 H 1.48499 * 109.47145 * 35.00255 * 3 2 1 6 6 H 1.48498 * 109.46861 * 155.00277 * 3 2 1 7 7 C 1.38819 * 119.99511 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99708 * 174.74020 * 7 2 1 9 9 N 1.36931 * 120.00023 * 354.74937 * 7 2 1 10 10 C 1.45970 * 125.27013 * 5.31516 * 9 7 2 11 11 C 1.54504 * 106.96138 * 181.41573 * 10 9 7 12 12 C 1.56025 * 102.61370 * 22.85007 * 11 10 9 13 13 H 1.08993 * 113.50837 * 202.63929 * 12 11 10 14 14 C 1.53099 * 105.81368 * 78.19113 * 12 11 10 15 15 C 1.52840 * 110.57633 * 195.71770 * 14 12 11 16 16 N 1.47153 * 107.97467 * 57.35243 * 15 14 12 17 17 C 1.34779 * 121.21468 * 122.68560 * 16 15 14 18 18 O 1.21279 * 119.99602 * 175.34886 * 17 16 15 19 19 C 1.50694 * 120.00386 * 355.34467 * 17 16 15 20 20 H 1.09004 * 109.67276 * 35.93606 * 19 17 16 21 21 C 1.53341 * 109.67735 * 156.47588 * 19 17 16 22 22 C 1.52903 * 108.68776 * 187.25374 * 21 19 17 23 23 N 1.45752 * 110.49550 * 309.27219 * 22 21 19 24 24 C 1.33352 * 124.10697 * 19.04262 * 23 22 21 25 25 O 1.21278 * 118.24612 * 177.82219 * 24 23 22 26 26 C 1.50171 * 123.50615 * 357.79472 * 24 23 22 27 27 C 1.46757 * 117.56558 * 302.70031 * 16 15 14 28 28 C 1.46466 * 126.05991 * 185.07588 * 9 7 2 29 29 H 1.08995 * 108.42548 * 269.90846 * 28 9 7 30 30 H 0.97004 * 119.99589 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.99402 * 62.09770 * 10 9 7 32 32 H 1.08996 * 110.14832 * 300.82492 * 10 9 7 33 33 H 1.08994 * 110.78194 * 264.56845 * 11 10 9 34 34 H 1.09000 * 110.77946 * 141.12908 * 11 10 9 35 35 H 1.08995 * 109.25146 * 75.43476 * 14 12 11 36 36 H 1.09000 * 109.25671 * 315.99802 * 14 12 11 37 37 H 1.08998 * 109.76250 * 297.72706 * 15 14 12 38 38 H 1.09002 * 109.80115 * 176.99320 * 15 14 12 39 39 H 1.09003 * 109.60360 * 307.02096 * 21 19 17 40 40 H 1.08992 * 109.60677 * 67.50789 * 21 19 17 41 41 H 1.08999 * 109.30947 * 188.94993 * 22 21 19 42 42 H 1.08999 * 109.11895 * 69.47413 * 22 21 19 43 43 H 0.97001 * 117.94824 * 199.05670 * 23 22 21 44 44 H 1.09007 * 109.40026 * 257.45376 * 26 24 23 45 45 H 1.09005 * 109.40068 * 137.71643 * 26 24 23 46 46 H 1.09003 * 109.22503 * 292.21266 * 27 16 15 47 47 H 1.08998 * 109.22468 * 172.85558 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3922 2.1074 -1.3948 5 1 1.5047 2.6198 0.8031 6 1 3.5967 1.4117 0.5916 7 6 2.0102 -1.2023 -0.0005 8 1 3.0868 -1.2042 -0.0863 9 7 1.3298 -2.3856 0.1075 10 6 -0.1233 -2.5244 0.1186 11 6 -0.4311 -4.0284 0.2931 12 6 0.8740 -4.5686 0.9560 13 1 1.0243 -5.6384 0.8117 14 6 0.7876 -4.1710 2.4320 15 6 2.1556 -4.2939 3.1024 16 7 3.1023 -3.4452 2.3614 17 6 3.7908 -2.4641 2.9777 18 8 4.6267 -1.8335 2.3658 19 6 3.5219 -2.1505 4.4269 20 1 3.3013 -3.0714 4.9668 21 6 4.7497 -1.4704 5.0445 22 6 4.5248 -1.3270 6.5501 23 7 3.2312 -0.7106 6.8164 24 6 2.2315 -0.6596 5.9353 25 8 1.1848 -0.1555 6.2832 26 6 2.3328 -1.1926 4.5350 27 6 3.2691 -3.7062 0.9269 28 6 1.9289 -3.7169 0.2255 29 1 2.0657 -4.1233 -0.7765 30 1 -0.4850 0.8401 0.0004 31 1 -0.5390 -2.1676 -0.8238 32 1 -0.5480 -1.9599 0.9486 33 1 -0.5991 -4.5035 -0.6734 34 1 -1.2878 -4.1740 0.9510 35 1 0.0785 -4.8250 2.9394 36 1 0.4419 -3.1399 2.5069 37 1 2.4889 -5.3312 3.0722 38 1 2.0912 -3.9576 4.1372 39 1 5.6351 -2.0798 4.8634 40 1 4.8841 -0.4846 4.5996 41 1 5.3138 -0.7065 6.9749 42 1 4.5552 -2.3142 7.0112 43 1 3.0885 -0.3122 7.6893 44 1 2.4716 -0.3634 3.8411 45 1 1.4153 -1.7243 4.2827 46 1 3.7527 -4.6736 0.7919 47 1 3.8961 -2.9283 0.4912 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084919686.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:48 Heat of formation + Delta-G solvation = -41.370568 kcal Electronic energy + Delta-G solvation = -29951.574676 eV Core-core repulsion = 26134.697693 eV Total energy + Delta-G solvation = -3816.876983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.69226 -39.63303 -38.20160 -36.19622 -35.05615 -33.14017 -32.83557 -31.13221 -29.73736 -29.12780 -28.39386 -25.53718 -24.59138 -23.86064 -22.73887 -22.53633 -19.99258 -19.71667 -19.12095 -18.22320 -17.33372 -16.92169 -16.58759 -16.13844 -15.54233 -15.16002 -14.90640 -14.64685 -14.35232 -14.09373 -13.94894 -13.83314 -13.54650 -13.34943 -12.87849 -12.83847 -12.56121 -12.02563 -11.90170 -11.79709 -11.57809 -11.40857 -11.27407 -11.00931 -10.95972 -10.88777 -10.77949 -10.66774 -10.08156 -10.03519 -9.85369 -9.82571 -9.63918 -9.52225 -9.16593 -9.13279 -8.47500 -8.13493 -6.75501 -5.63773 -2.96060 2.69269 2.98176 3.25954 3.39651 3.46409 3.53976 3.59280 4.45463 4.57428 4.59111 4.63805 4.81423 4.94432 5.05912 5.14524 5.18737 5.25250 5.34459 5.42868 5.49111 5.55125 5.67982 5.71402 5.73477 5.77581 5.81752 5.96873 6.01507 6.07648 6.14603 6.16032 6.26411 6.31673 6.45038 6.50274 6.62932 6.71921 6.74679 6.94923 7.08110 7.27052 7.63889 7.71377 7.87055 7.93325 8.22553 8.34005 8.63091 9.32180 9.91898 10.55187 11.47136 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.010936 B = 0.006348 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.851654 B = 4409.830097 C = 5364.560670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.004 4.004 3 Si 0.896 3.104 4 H -0.291 1.291 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.217 4.217 8 H 0.079 0.921 9 N -0.587 5.587 10 C 0.179 3.821 11 C -0.145 4.145 12 C -0.101 4.101 13 H 0.075 0.925 14 C -0.124 4.124 15 C 0.107 3.893 16 N -0.591 5.591 17 C 0.529 3.471 18 O -0.534 6.534 19 C -0.109 4.109 20 H 0.095 0.905 21 C -0.119 4.119 22 C 0.113 3.887 23 N -0.724 5.724 24 C 0.526 3.474 25 O -0.553 6.553 26 C -0.121 4.121 27 C 0.115 3.885 28 C 0.154 3.846 29 H 0.027 0.973 30 H 0.250 0.750 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.397 0.603 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.053 0.947 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.904 -11.128 11.869 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.200 4.200 3 Si 0.727 3.273 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.345 4.345 8 H 0.096 0.904 9 N -0.312 5.312 10 C 0.054 3.946 11 C -0.183 4.183 12 C -0.121 4.121 13 H 0.094 0.906 14 C -0.162 4.162 15 C -0.016 4.016 16 N -0.324 5.324 17 C 0.316 3.684 18 O -0.410 6.410 19 C -0.130 4.130 20 H 0.113 0.887 21 C -0.157 4.157 22 C -0.012 4.012 23 N -0.377 5.377 24 C 0.313 3.687 25 O -0.431 6.431 26 C -0.161 4.161 27 C -0.008 4.008 28 C 0.046 3.954 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.232 0.768 44 H 0.131 0.869 45 H 0.127 0.873 46 H 0.072 0.928 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.797 -10.380 11.462 16.892 hybrid contribution 0.259 1.004 0.211 1.058 sum 7.057 -9.376 11.673 16.552 Atomic orbital electron populations 1.69975 1.04762 1.24783 1.57321 1.24711 0.95516 0.97341 1.02413 0.86308 0.79322 0.84211 0.77490 1.21850 1.21771 1.20158 1.18973 0.90879 0.82181 1.42518 0.90368 1.43931 1.01500 1.00223 1.85584 1.20989 0.84463 0.88418 1.00693 1.23197 0.96097 1.00012 0.99009 1.22366 0.97234 0.97726 0.94778 0.90650 1.21870 0.95536 1.03506 0.95337 1.21727 0.89996 0.94282 0.95569 1.47789 1.41754 1.33277 1.09546 1.20022 0.81018 0.79176 0.88137 1.90686 1.33935 1.49614 1.66758 1.21420 0.96742 0.99962 0.94904 0.88687 1.21741 0.97543 1.03206 0.93256 1.21400 0.84702 0.98234 0.96830 1.45498 1.14470 1.60289 1.17455 1.20143 0.82818 0.78319 0.87401 1.90771 1.28178 1.45642 1.78464 1.21580 0.99525 1.01202 0.93834 1.21379 0.98864 1.00646 0.79913 1.20718 0.91175 0.88140 0.95383 0.95618 0.93964 0.94621 0.93299 0.92889 0.92337 0.92035 0.89887 0.91735 0.90483 0.89301 0.89688 0.90262 0.91629 0.76783 0.86895 0.87299 0.92839 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.10 10.29 55.49 0.57 -26.53 16 2 C 0.00 -0.11 5.48 -17.43 -0.10 -0.20 16 3 Si 0.90 23.13 29.56 -169.99 -5.02 18.11 16 4 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 5 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.22 -5.92 9.64 -15.06 -0.15 -6.06 16 8 H 0.08 2.19 6.63 -52.49 -0.35 1.84 16 9 N -0.59 -14.06 3.13 -165.58 -0.52 -14.58 16 10 C 0.18 4.21 4.54 -3.54 -0.02 4.19 16 11 C -0.14 -2.57 6.31 -24.32 -0.15 -2.72 16 12 C -0.10 -1.60 3.72 -88.43 -0.33 -1.93 16 13 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 14 C -0.12 -1.82 5.00 -26.76 -0.13 -1.96 16 15 C 0.11 1.37 6.30 -3.77 -0.02 1.34 16 16 N -0.59 -9.57 2.97 -174.09 -0.52 -10.08 16 17 C 0.53 9.07 6.82 -10.99 -0.07 8.99 16 18 O -0.53 -11.22 15.72 5.56 0.09 -11.13 16 19 C -0.11 -1.42 1.76 -91.56 -0.16 -1.59 16 20 H 0.10 0.99 6.30 -51.93 -0.33 0.66 16 21 C -0.12 -1.32 4.71 -26.60 -0.13 -1.44 16 22 C 0.11 0.91 7.17 -4.50 -0.03 0.88 16 23 N -0.72 -7.85 5.45 -61.40 -0.33 -8.18 16 24 C 0.53 7.97 7.71 -11.87 -0.09 7.88 16 25 O -0.55 -10.70 17.78 5.56 0.10 -10.60 16 26 C -0.12 -1.90 5.30 -28.10 -0.15 -2.05 16 27 C 0.12 2.04 5.66 -4.78 -0.03 2.01 16 28 C 0.15 2.95 3.01 -68.30 -0.21 2.74 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.04 0.95 7.66 -51.93 -0.40 0.55 16 32 H 0.05 1.29 6.81 -51.93 -0.35 0.93 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.95 7.96 -51.93 -0.41 0.54 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.54 6.76 -51.93 -0.35 1.19 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.84 5.31 -51.93 -0.28 0.57 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.40 3.72 8.80 -40.82 -0.36 3.36 16 44 H 0.11 2.12 8.09 -51.93 -0.42 1.70 16 45 H 0.11 1.78 7.94 -51.93 -0.41 1.37 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.09 1.98 5.64 -51.93 -0.29 1.69 16 LS Contribution 356.94 15.07 5.38 5.38 Total: -1.00 -34.62 356.94 -9.33 -43.95 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.31 Total: 3.58 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: -1.76 Total: 10.08 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.80 Total: -59.37 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: 0.19 Total: -21.73 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.62 -9.33 -43.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084919686.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.584 kcal (2) G-P(sol) polarization free energy of solvation -34.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds