Wall clock time and date at job start Fri Apr 10 2020 18:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00393 * 2 1 4 4 H 1.48503 * 109.46991 * 275.00132 * 3 2 1 5 5 H 1.48499 * 109.47145 * 35.00255 * 3 2 1 6 6 H 1.48498 * 109.46861 * 155.00277 * 3 2 1 7 7 C 1.38819 * 119.99511 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99708 * 174.74020 * 7 2 1 9 9 N 1.36931 * 120.00023 * 354.74937 * 7 2 1 10 10 C 1.45970 * 125.27013 * 5.31516 * 9 7 2 11 11 C 1.54504 * 106.96138 * 181.41573 * 10 9 7 12 12 C 1.56025 * 102.61370 * 22.85007 * 11 10 9 13 13 H 1.08993 * 113.50837 * 202.63929 * 12 11 10 14 14 C 1.53099 * 105.81368 * 78.19113 * 12 11 10 15 15 C 1.52840 * 110.57633 * 195.71770 * 14 12 11 16 16 N 1.47153 * 107.97467 * 57.35243 * 15 14 12 17 17 C 1.34779 * 121.21468 * 122.68560 * 16 15 14 18 18 O 1.21279 * 119.99602 * 175.34886 * 17 16 15 19 19 C 1.50694 * 120.00386 * 355.34467 * 17 16 15 20 20 H 1.09004 * 109.67276 * 35.93606 * 19 17 16 21 21 C 1.53341 * 109.67735 * 156.47588 * 19 17 16 22 22 C 1.52903 * 108.68776 * 187.25374 * 21 19 17 23 23 N 1.45752 * 110.49550 * 309.27219 * 22 21 19 24 24 C 1.33352 * 124.10697 * 19.04262 * 23 22 21 25 25 O 1.21278 * 118.24612 * 177.82219 * 24 23 22 26 26 C 1.50171 * 123.50615 * 357.79472 * 24 23 22 27 27 C 1.46757 * 117.56558 * 302.70031 * 16 15 14 28 28 C 1.46466 * 126.05991 * 185.07588 * 9 7 2 29 29 H 1.08995 * 108.42548 * 269.90846 * 28 9 7 30 30 H 0.97004 * 119.99589 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.99402 * 62.09770 * 10 9 7 32 32 H 1.08996 * 110.14832 * 300.82492 * 10 9 7 33 33 H 1.08994 * 110.78194 * 264.56845 * 11 10 9 34 34 H 1.09000 * 110.77946 * 141.12908 * 11 10 9 35 35 H 1.08995 * 109.25146 * 75.43476 * 14 12 11 36 36 H 1.09000 * 109.25671 * 315.99802 * 14 12 11 37 37 H 1.08998 * 109.76250 * 297.72706 * 15 14 12 38 38 H 1.09002 * 109.80115 * 176.99320 * 15 14 12 39 39 H 1.09003 * 109.60360 * 307.02096 * 21 19 17 40 40 H 1.08992 * 109.60677 * 67.50789 * 21 19 17 41 41 H 1.08999 * 109.30947 * 188.94993 * 22 21 19 42 42 H 1.08999 * 109.11895 * 69.47413 * 22 21 19 43 43 H 0.97001 * 117.94824 * 199.05670 * 23 22 21 44 44 H 1.09007 * 109.40026 * 257.45376 * 26 24 23 45 45 H 1.09005 * 109.40068 * 137.71643 * 26 24 23 46 46 H 1.09003 * 109.22503 * 292.21266 * 27 16 15 47 47 H 1.08998 * 109.22468 * 172.85558 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3922 2.1074 -1.3948 5 1 1.5047 2.6198 0.8031 6 1 3.5967 1.4117 0.5916 7 6 2.0102 -1.2023 -0.0005 8 1 3.0868 -1.2042 -0.0863 9 7 1.3298 -2.3856 0.1075 10 6 -0.1233 -2.5244 0.1186 11 6 -0.4311 -4.0284 0.2931 12 6 0.8740 -4.5686 0.9560 13 1 1.0243 -5.6384 0.8117 14 6 0.7876 -4.1710 2.4320 15 6 2.1556 -4.2939 3.1024 16 7 3.1023 -3.4452 2.3614 17 6 3.7908 -2.4641 2.9777 18 8 4.6267 -1.8335 2.3658 19 6 3.5219 -2.1505 4.4269 20 1 3.3013 -3.0714 4.9668 21 6 4.7497 -1.4704 5.0445 22 6 4.5248 -1.3270 6.5501 23 7 3.2312 -0.7106 6.8164 24 6 2.2315 -0.6596 5.9353 25 8 1.1848 -0.1555 6.2832 26 6 2.3328 -1.1926 4.5350 27 6 3.2691 -3.7062 0.9269 28 6 1.9289 -3.7169 0.2255 29 1 2.0657 -4.1233 -0.7765 30 1 -0.4850 0.8401 0.0004 31 1 -0.5390 -2.1676 -0.8238 32 1 -0.5480 -1.9599 0.9486 33 1 -0.5991 -4.5035 -0.6734 34 1 -1.2878 -4.1740 0.9510 35 1 0.0785 -4.8250 2.9394 36 1 0.4419 -3.1399 2.5069 37 1 2.4889 -5.3312 3.0722 38 1 2.0912 -3.9576 4.1372 39 1 5.6351 -2.0798 4.8634 40 1 4.8841 -0.4846 4.5996 41 1 5.3138 -0.7065 6.9749 42 1 4.5552 -2.3142 7.0112 43 1 3.0885 -0.3122 7.6893 44 1 2.4716 -0.3634 3.8411 45 1 1.4153 -1.7243 4.2827 46 1 3.7527 -4.6736 0.7919 47 1 3.8961 -2.9283 0.4912 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084919686.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:48 Heat of formation + Delta-G solvation = -67.356044 kcal Electronic energy + Delta-G solvation = -29952.701491 eV Core-core repulsion = 26134.697693 eV Total energy + Delta-G solvation = -3818.003798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.91019 -40.94653 -39.66131 -37.34175 -36.56312 -34.67293 -34.24530 -32.75910 -30.90152 -30.57603 -30.04136 -26.80569 -26.46247 -25.07866 -23.95148 -23.81764 -21.73168 -21.07517 -20.23358 -19.60466 -18.46347 -18.40019 -18.15170 -17.28721 -16.98736 -16.63313 -16.31963 -16.11941 -15.89342 -15.62210 -15.20522 -15.08034 -14.92357 -14.55990 -14.26612 -14.16192 -14.04415 -13.65593 -13.20074 -13.07799 -13.01843 -12.89730 -12.81402 -12.64504 -12.53994 -12.32382 -12.10241 -12.06662 -12.01178 -11.73521 -11.39948 -11.35774 -11.20377 -11.05270 -10.63587 -10.46674 -10.09828 -9.44646 -8.79824 -7.85134 -5.14525 1.31285 1.34837 1.44433 1.46832 1.65920 2.18663 2.27951 2.44896 3.32790 3.35821 3.56830 3.63999 3.66164 3.70830 3.90160 3.92128 4.06246 4.17451 4.20339 4.32496 4.38220 4.51292 4.54393 4.55831 4.64284 4.67555 4.74915 4.76289 4.83439 4.91516 4.93475 4.97278 5.05361 5.17181 5.18483 5.22417 5.35015 5.53456 5.68655 5.73804 5.75203 5.82647 5.85802 6.21648 6.24450 6.60990 7.12722 7.16309 7.32488 7.86052 8.46174 9.24142 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.010936 B = 0.006348 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.851654 B = 4409.830097 C = 5364.560670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.059 4.059 3 Si 0.943 3.057 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.281 1.281 7 C -0.200 4.200 8 H 0.066 0.934 9 N -0.602 5.602 10 C 0.187 3.813 11 C -0.132 4.132 12 C -0.083 4.083 13 H 0.125 0.875 14 C -0.124 4.124 15 C 0.105 3.895 16 N -0.594 5.594 17 C 0.518 3.482 18 O -0.584 6.584 19 C -0.096 4.096 20 H 0.137 0.863 21 C -0.119 4.119 22 C 0.114 3.886 23 N -0.705 5.705 24 C 0.529 3.471 25 O -0.603 6.603 26 C -0.115 4.115 27 C 0.119 3.881 28 C 0.142 3.858 29 H 0.027 0.973 30 H 0.241 0.759 31 H -0.010 1.010 32 H 0.009 0.991 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.033 0.967 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.052 0.948 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.409 0.591 44 H 0.067 0.933 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.375 -15.136 14.508 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.252 4.252 3 Si 0.774 3.226 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.207 1.207 7 C -0.330 4.330 8 H 0.084 0.916 9 N -0.326 5.326 10 C 0.062 3.938 11 C -0.170 4.170 12 C -0.102 4.102 13 H 0.143 0.857 14 C -0.162 4.162 15 C -0.016 4.016 16 N -0.325 5.325 17 C 0.306 3.694 18 O -0.464 6.464 19 C -0.117 4.117 20 H 0.155 0.845 21 C -0.157 4.157 22 C -0.008 4.008 23 N -0.356 5.356 24 C 0.316 3.684 25 O -0.486 6.486 26 C -0.156 4.156 27 C -0.005 4.005 28 C 0.035 3.965 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.008 0.992 32 H 0.028 0.972 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.052 0.948 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.071 0.929 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.246 0.754 44 H 0.085 0.915 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.318 -14.454 14.128 21.856 hybrid contribution -0.123 2.196 -0.676 2.301 sum 8.195 -12.257 13.453 19.959 Atomic orbital electron populations 1.70165 1.05556 1.24321 1.59511 1.25260 0.96173 0.99677 1.04106 0.85550 0.77924 0.81791 0.77317 1.21325 1.22407 1.20711 1.19014 0.90412 0.83762 1.39826 0.91622 1.44111 1.02090 1.01318 1.85128 1.20705 0.83953 0.92427 0.96740 1.23054 0.98174 0.95187 1.00595 1.22425 0.93620 0.99433 0.94695 0.85743 1.21851 0.97713 1.01373 0.95231 1.22054 0.87830 0.95908 0.95806 1.47985 1.41951 1.33462 1.09120 1.20776 0.80388 0.78554 0.89659 1.90659 1.36327 1.51204 1.68216 1.21448 0.96415 1.01066 0.92818 0.84507 1.21770 0.97218 1.01595 0.95139 1.21705 0.83612 1.00805 0.94702 1.45417 1.14355 1.58856 1.16957 1.19916 0.83072 0.78035 0.87401 1.90747 1.30475 1.48082 1.79262 1.21379 1.00341 1.00214 0.93634 1.21228 0.97254 1.01211 0.80801 1.21049 0.93061 0.86055 0.96330 0.95578 0.94966 0.99158 0.97241 0.91626 0.90350 0.88252 0.94835 0.87330 0.88453 0.87474 0.92881 0.87170 0.87650 0.75381 0.91464 0.88619 0.88688 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.43 10.29 21.65 0.22 -59.21 16 2 C -0.06 -3.58 5.48 84.86 0.47 -3.12 16 3 Si 0.94 50.58 29.56 68.60 2.03 52.60 16 4 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 5 H -0.30 -16.08 7.11 99.48 0.71 -15.37 16 6 H -0.28 -15.13 7.11 99.48 0.71 -14.42 16 7 C -0.20 -11.52 9.64 84.04 0.81 -10.71 16 8 H 0.07 3.90 6.63 -2.91 -0.02 3.88 16 9 N -0.60 -29.87 3.13 -677.76 -2.12 -31.99 16 10 C 0.19 9.17 4.54 86.99 0.39 9.57 16 11 C -0.13 -4.46 6.31 32.15 0.20 -4.26 16 12 C -0.08 -2.30 3.72 -9.37 -0.03 -2.34 16 13 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 14 C -0.12 -3.20 5.00 30.57 0.15 -3.05 16 15 C 0.11 2.20 6.30 86.20 0.54 2.75 16 16 N -0.59 -18.10 2.97 -823.09 -2.44 -20.55 16 17 C 0.52 17.52 6.82 87.65 0.60 18.12 16 18 O -0.58 -25.37 15.72 -3.02 -0.05 -25.42 16 19 C -0.10 -2.37 1.76 -11.40 -0.02 -2.39 16 20 H 0.14 2.21 6.30 -2.39 -0.02 2.20 16 21 C -0.12 -2.37 4.71 30.68 0.14 -2.23 16 22 C 0.11 1.35 7.17 86.49 0.62 1.97 16 23 N -0.70 -13.46 5.45 -467.36 -2.55 -16.01 16 24 C 0.53 15.91 7.71 87.71 0.68 16.59 16 25 O -0.60 -23.92 17.78 -3.02 -0.05 -23.98 16 26 C -0.12 -3.72 5.30 29.71 0.16 -3.56 16 27 C 0.12 4.05 5.66 85.76 0.49 4.53 16 28 C 0.14 5.25 3.01 44.77 0.13 5.39 16 29 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.24 15.02 8.31 -92.71 -0.77 14.25 16 31 H -0.01 -0.56 7.66 -2.39 -0.02 -0.58 16 32 H 0.01 0.53 6.81 -2.39 -0.02 0.51 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.08 2.36 7.96 -2.39 -0.02 2.34 16 35 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.03 1.22 6.76 -2.39 -0.02 1.21 16 37 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.10 1.66 5.31 -2.39 -0.01 1.65 16 39 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.05 1.41 8.09 -2.39 -0.02 1.39 16 41 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.41 6.49 8.80 -92.71 -0.82 5.67 16 44 H 0.07 2.78 8.09 -2.38 -0.02 2.76 16 45 H 0.10 3.28 7.94 -2.38 -0.02 3.26 16 46 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.05 2.21 5.64 -2.39 -0.01 2.19 16 Total: -1.00 -86.77 356.94 0.54 -86.23 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.17 Total: 11.05 kcal Atomic # 6 Polarization: 21.94 SS G_CDS: 5.33 Total: 27.27 kcal Atomic # 7 Polarization: -120.88 SS G_CDS: -6.88 Total: -127.76 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -0.10 Total: -49.40 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.03 Total: 52.60 kcal Total: -86.77 0.54 -86.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084919686.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.875 kcal (2) G-P(sol) polarization free energy of solvation -86.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds