Wall clock time and date at job start Fri Apr 10 2020 18:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99888 * 2 1 4 4 H 1.48498 * 109.46864 * 239.99638 * 3 2 1 5 5 H 1.48497 * 109.47284 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47153 * 119.99697 * 3 2 1 7 7 C 1.38808 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00199 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99906 * 0.02562 * 7 2 1 10 10 C 1.47428 * 126.06187 * 359.96849 * 9 7 2 11 11 C 1.54507 * 107.14962 * 181.63499 * 10 9 7 12 12 C 1.56028 * 102.61120 * 22.85177 * 11 10 9 13 13 H 1.08996 * 112.86432 * 202.92725 * 12 11 10 14 14 C 1.51598 * 105.73214 * 79.05127 * 12 11 10 15 15 C 1.52837 * 110.30426 * 195.17461 * 14 12 11 16 16 N 1.47161 * 107.97666 * 57.26295 * 15 14 12 17 17 C 1.34779 * 121.21543 * 122.72369 * 16 15 14 18 18 O 1.21281 * 119.99595 * 179.97438 * 17 16 15 19 19 C 1.50695 * 120.00092 * 359.97438 * 17 16 15 20 20 C 1.53003 * 109.46673 * 180.02562 * 19 17 16 21 21 H 1.08993 * 110.43876 * 54.29767 * 20 19 17 22 22 C 1.54636 * 110.48340 * 176.84105 * 20 19 17 23 23 C 1.54692 * 101.66970 * 143.39165 * 22 20 19 24 24 N 1.46766 * 105.53006 * 334.73837 * 23 22 20 25 25 C 1.34420 * 111.30563 * 16.92659 * 24 23 22 26 26 O 1.21279 * 124.94213 * 179.62619 * 25 24 23 27 27 C 1.46756 * 117.56031 * 302.70438 * 16 15 14 28 28 C 1.46472 * 126.05478 * 179.97438 * 9 7 2 29 29 H 1.08996 * 108.42516 * 269.88218 * 28 9 7 30 30 H 0.97001 * 119.99886 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.90417 * 62.25685 * 10 9 7 32 32 H 1.08996 * 109.90480 * 301.01545 * 10 9 7 33 33 H 1.09000 * 110.77979 * 141.13448 * 11 10 9 34 34 H 1.08999 * 110.78242 * 264.57595 * 11 10 9 35 35 H 1.09004 * 109.45727 * 74.93345 * 14 12 11 36 36 H 1.08996 * 109.29850 * 315.31717 * 14 12 11 37 37 H 1.09001 * 109.76178 * 297.64821 * 15 14 12 38 38 H 1.08993 * 109.80329 * 176.90647 * 15 14 12 39 39 H 1.08999 * 109.47258 * 299.99515 * 19 17 16 40 40 H 1.09000 * 109.47232 * 60.00231 * 19 17 16 41 41 H 1.08999 * 110.96431 * 261.59172 * 22 20 19 42 42 H 1.08999 * 110.96999 * 25.35121 * 22 20 19 43 43 H 1.09000 * 110.29617 * 215.68066 * 23 22 20 44 44 H 1.08998 * 110.21275 * 93.75279 * 23 22 20 45 45 H 0.97009 * 124.34892 * 196.94324 * 24 23 22 46 46 H 1.09011 * 109.22637 * 292.22008 * 27 16 15 47 47 H 1.08997 * 109.22967 * 172.86602 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1405 -2.5436 0.0007 11 6 -0.4378 -4.0592 0.0427 12 6 0.8718 -4.6464 0.6548 13 1 1.0214 -5.6971 0.4064 14 6 0.7737 -4.4015 2.1476 15 6 2.1402 -4.5875 2.8065 16 7 3.0868 -3.6670 2.1568 17 6 3.7716 -2.7511 2.8701 18 8 4.5466 -2.0037 2.3120 19 6 3.5742 -2.6559 4.3610 20 6 4.4624 -1.5440 4.9230 21 1 4.2764 -0.6067 4.3987 22 6 4.2199 -1.3726 6.4405 23 6 5.6443 -1.0498 6.9505 24 7 6.5577 -1.6461 5.9686 25 6 5.9218 -1.9285 4.8185 26 8 6.4422 -2.4205 3.8398 27 6 3.2581 -3.7831 0.7039 28 6 1.9199 -3.7267 0.0005 29 1 2.0578 -4.0424 -1.0335 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5600 -2.1083 -0.9064 32 1 -0.5652 -2.0577 0.8790 33 1 -1.2927 -4.2679 0.6859 34 1 -0.6038 -4.4488 -0.9616 35 1 0.0649 -5.1046 2.5851 36 1 0.4254 -3.3838 2.3235 37 1 2.4763 -5.6159 2.6738 38 1 2.0721 -4.3564 3.8695 39 1 2.5298 -2.4294 4.5756 40 1 3.8429 -3.6052 4.8245 41 1 3.5369 -0.5458 6.6354 42 1 3.8478 -2.2967 6.8829 43 1 5.8039 -1.4944 7.9328 44 1 5.7922 0.0291 6.9967 45 1 7.4994 -1.8149 6.1291 46 1 3.7445 -4.7313 0.4744 47 1 3.8845 -2.9644 0.3497 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084956584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:02 Heat of formation + Delta-G solvation = -34.779818 kcal Electronic energy + Delta-G solvation = -29428.568977 eV Core-core repulsion = 25611.977790 eV Total energy + Delta-G solvation = -3816.591187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.52729 -39.58382 -37.79901 -36.19147 -34.79884 -32.94951 -32.74373 -31.09604 -29.55012 -28.53968 -28.26494 -25.85248 -24.52332 -23.42694 -22.42513 -21.97849 -20.28994 -19.90323 -19.13568 -18.03861 -17.30575 -16.74572 -16.39698 -16.34531 -15.39115 -14.89185 -14.72092 -14.49834 -14.23420 -13.86584 -13.73838 -13.61817 -13.43960 -12.92743 -12.80476 -12.68297 -12.46574 -12.29092 -11.95442 -11.70110 -11.66507 -11.33756 -11.19768 -11.18893 -10.96249 -10.81957 -10.70650 -10.61729 -10.05934 -9.79086 -9.71788 -9.57221 -9.53033 -9.41676 -9.10800 -8.94516 -8.45902 -7.88404 -6.68998 -5.57313 -2.88499 2.81967 3.34301 3.42547 3.53622 3.55075 3.61580 3.62394 4.33644 4.39397 4.61638 4.64934 4.88827 5.09540 5.13302 5.21415 5.24722 5.35211 5.41094 5.42965 5.57742 5.61135 5.63212 5.65450 5.78697 5.80572 5.82193 5.89741 6.07707 6.10782 6.16246 6.22477 6.37057 6.40072 6.52913 6.57654 6.71622 6.85210 6.87024 7.03404 7.03908 7.27192 7.68452 7.71094 7.98245 8.13160 8.37623 8.43835 8.98389 9.37190 9.97664 10.62412 11.55143 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.012217 B = 0.005342 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.343439 B = 5240.036513 C = 6543.628815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.010 4.010 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.285 1.285 7 C -0.207 4.207 8 H 0.081 0.919 9 N -0.588 5.588 10 C 0.179 3.821 11 C -0.145 4.145 12 C -0.102 4.102 13 H 0.074 0.926 14 C -0.122 4.122 15 C 0.112 3.888 16 N -0.600 5.600 17 C 0.519 3.481 18 O -0.510 6.510 19 C -0.119 4.119 20 C -0.110 4.110 21 H 0.118 0.882 22 C -0.131 4.131 23 C 0.104 3.896 24 N -0.744 5.744 25 C 0.520 3.480 26 O -0.498 6.498 27 C 0.116 3.884 28 C 0.155 3.845 29 H 0.026 0.974 30 H 0.249 0.751 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.406 0.594 46 H 0.050 0.950 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.974 -9.080 15.627 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.211 1.211 7 C -0.336 4.336 8 H 0.099 0.901 9 N -0.314 5.314 10 C 0.055 3.945 11 C -0.183 4.183 12 C -0.121 4.121 13 H 0.092 0.908 14 C -0.160 4.160 15 C -0.012 4.012 16 N -0.334 5.334 17 C 0.306 3.694 18 O -0.384 6.384 19 C -0.160 4.160 20 C -0.132 4.132 21 H 0.136 0.864 22 C -0.168 4.168 23 C -0.021 4.021 24 N -0.402 5.402 25 C 0.305 3.695 26 O -0.370 6.370 27 C -0.007 4.007 28 C 0.046 3.954 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.244 0.756 46 H 0.068 0.932 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.513 -8.641 14.742 17.674 hybrid contribution 0.615 0.887 0.171 1.092 sum 5.128 -7.754 14.913 17.573 Atomic orbital electron populations 1.69957 1.04724 1.24692 1.58359 1.24680 0.95556 0.97344 1.02949 0.86273 0.78377 0.83520 0.78198 1.21374 1.21980 1.21126 1.19019 0.90607 0.82018 1.41926 0.90109 1.44282 1.01348 0.99299 1.86441 1.21203 0.84395 0.88215 1.00714 1.23203 0.96133 0.99809 0.99197 1.22091 0.97214 0.97805 0.95023 0.90800 1.21579 0.95773 1.03226 0.95402 1.21603 0.89879 0.93029 0.96642 1.47723 1.42476 1.35357 1.07835 1.20055 0.80520 0.80206 0.88631 1.90729 1.35258 1.40854 1.71572 1.21500 1.01266 0.98861 0.94355 1.21744 0.93205 1.01737 0.96475 0.86389 1.22746 0.96355 1.03617 0.94131 1.22022 0.89379 0.98433 0.92276 1.46258 1.12606 1.65537 1.15834 1.20766 0.89357 0.77369 0.82034 1.90817 1.72125 1.42035 1.32071 1.21308 0.98566 1.01300 0.79558 1.20712 0.91319 0.87688 0.95670 0.95673 0.94124 0.94223 0.93760 0.92374 0.92874 0.92170 0.90114 0.92179 0.90793 0.88166 0.89556 0.88915 0.89846 0.90565 0.91298 0.75633 0.93197 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.75 10.38 55.49 0.58 -27.17 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 3 Si 0.91 23.79 29.55 -169.99 -5.02 18.76 16 4 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 5 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 6 H -0.28 -7.56 7.11 56.52 0.40 -7.16 16 7 C -0.21 -5.92 9.70 -15.06 -0.15 -6.06 16 8 H 0.08 2.40 6.52 -52.49 -0.34 2.05 16 9 N -0.59 -14.83 3.20 -164.40 -0.53 -15.36 16 10 C 0.18 4.30 4.60 -2.74 -0.01 4.29 16 11 C -0.15 -2.65 6.30 -24.32 -0.15 -2.80 16 12 C -0.10 -1.70 3.60 -89.17 -0.32 -2.03 16 13 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 14 C -0.12 -1.86 4.96 -27.52 -0.14 -2.00 16 15 C 0.11 1.57 6.35 -3.76 -0.02 1.55 16 16 N -0.60 -11.01 2.97 -174.08 -0.52 -11.53 16 17 C 0.52 10.21 7.17 -10.99 -0.08 10.14 16 18 O -0.51 -12.39 13.32 -16.80 -0.22 -12.62 16 19 C -0.12 -1.69 3.47 -27.88 -0.10 -1.78 16 20 C -0.11 -1.49 2.55 -90.62 -0.23 -1.72 16 21 H 0.12 1.89 7.96 -51.93 -0.41 1.48 16 22 C -0.13 -1.08 6.72 -24.98 -0.17 -1.25 16 23 C 0.10 0.77 7.79 -3.01 -0.02 0.75 16 24 N -0.74 -8.01 6.24 -59.09 -0.37 -8.38 16 25 C 0.52 8.08 7.70 -10.86 -0.08 8.00 16 26 O -0.50 -10.30 15.39 -16.80 -0.26 -10.56 16 27 C 0.12 2.32 5.68 -4.77 -0.03 2.29 16 28 C 0.15 3.19 3.02 -68.28 -0.21 2.98 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.04 1.07 7.57 -51.93 -0.39 0.68 16 32 H 0.04 1.17 7.02 -51.93 -0.36 0.81 16 33 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.53 6.80 -51.93 -0.35 1.18 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.85 6.02 -51.93 -0.31 0.54 16 39 H 0.10 1.26 7.79 -51.93 -0.40 0.85 16 40 H 0.09 1.02 7.90 -51.93 -0.41 0.61 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.56 7.91 -51.93 -0.41 0.15 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.41 3.70 8.96 -40.82 -0.37 3.33 16 46 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 47 H 0.09 2.22 5.54 -51.93 -0.29 1.93 16 LS Contribution 357.00 15.07 5.38 5.38 Total: -1.00 -37.20 357.00 -10.18 -47.37 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.41 Total: 2.15 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: -1.80 Total: 11.96 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -0.84 Total: -62.44 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.48 Total: -23.18 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -5.02 Total: 18.76 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.20 -10.18 -47.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084956584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.593 kcal (2) G-P(sol) polarization free energy of solvation -37.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds