Wall clock time and date at job start Fri Apr 10 2020 18:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99888 * 2 1 4 4 H 1.48498 * 109.46864 * 239.99638 * 3 2 1 5 5 H 1.48497 * 109.47284 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47153 * 119.99697 * 3 2 1 7 7 C 1.38808 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00199 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99906 * 0.02562 * 7 2 1 10 10 C 1.47428 * 126.06187 * 359.96849 * 9 7 2 11 11 C 1.54507 * 107.14962 * 181.63499 * 10 9 7 12 12 C 1.56028 * 102.61120 * 22.85177 * 11 10 9 13 13 H 1.08996 * 112.86432 * 202.92725 * 12 11 10 14 14 C 1.51598 * 105.73214 * 79.05127 * 12 11 10 15 15 C 1.52837 * 110.30426 * 195.17461 * 14 12 11 16 16 N 1.47161 * 107.97666 * 57.26295 * 15 14 12 17 17 C 1.34779 * 121.21543 * 122.72369 * 16 15 14 18 18 O 1.21281 * 119.99595 * 179.97438 * 17 16 15 19 19 C 1.50695 * 120.00092 * 359.97438 * 17 16 15 20 20 C 1.53003 * 109.46673 * 180.02562 * 19 17 16 21 21 H 1.08993 * 110.43876 * 54.29767 * 20 19 17 22 22 C 1.54636 * 110.48340 * 176.84105 * 20 19 17 23 23 C 1.54692 * 101.66970 * 143.39165 * 22 20 19 24 24 N 1.46766 * 105.53006 * 334.73837 * 23 22 20 25 25 C 1.34420 * 111.30563 * 16.92659 * 24 23 22 26 26 O 1.21279 * 124.94213 * 179.62619 * 25 24 23 27 27 C 1.46756 * 117.56031 * 302.70438 * 16 15 14 28 28 C 1.46472 * 126.05478 * 179.97438 * 9 7 2 29 29 H 1.08996 * 108.42516 * 269.88218 * 28 9 7 30 30 H 0.97001 * 119.99886 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.90417 * 62.25685 * 10 9 7 32 32 H 1.08996 * 109.90480 * 301.01545 * 10 9 7 33 33 H 1.09000 * 110.77979 * 141.13448 * 11 10 9 34 34 H 1.08999 * 110.78242 * 264.57595 * 11 10 9 35 35 H 1.09004 * 109.45727 * 74.93345 * 14 12 11 36 36 H 1.08996 * 109.29850 * 315.31717 * 14 12 11 37 37 H 1.09001 * 109.76178 * 297.64821 * 15 14 12 38 38 H 1.08993 * 109.80329 * 176.90647 * 15 14 12 39 39 H 1.08999 * 109.47258 * 299.99515 * 19 17 16 40 40 H 1.09000 * 109.47232 * 60.00231 * 19 17 16 41 41 H 1.08999 * 110.96431 * 261.59172 * 22 20 19 42 42 H 1.08999 * 110.96999 * 25.35121 * 22 20 19 43 43 H 1.09000 * 110.29617 * 215.68066 * 23 22 20 44 44 H 1.08998 * 110.21275 * 93.75279 * 23 22 20 45 45 H 0.97009 * 124.34892 * 196.94324 * 24 23 22 46 46 H 1.09011 * 109.22637 * 292.22008 * 27 16 15 47 47 H 1.08997 * 109.22967 * 172.86602 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1405 -2.5436 0.0007 11 6 -0.4378 -4.0592 0.0427 12 6 0.8718 -4.6464 0.6548 13 1 1.0214 -5.6971 0.4064 14 6 0.7737 -4.4015 2.1476 15 6 2.1402 -4.5875 2.8065 16 7 3.0868 -3.6670 2.1568 17 6 3.7716 -2.7511 2.8701 18 8 4.5466 -2.0037 2.3120 19 6 3.5742 -2.6559 4.3610 20 6 4.4624 -1.5440 4.9230 21 1 4.2764 -0.6067 4.3987 22 6 4.2199 -1.3726 6.4405 23 6 5.6443 -1.0498 6.9505 24 7 6.5577 -1.6461 5.9686 25 6 5.9218 -1.9285 4.8185 26 8 6.4422 -2.4205 3.8398 27 6 3.2581 -3.7831 0.7039 28 6 1.9199 -3.7267 0.0005 29 1 2.0578 -4.0424 -1.0335 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5600 -2.1083 -0.9064 32 1 -0.5652 -2.0577 0.8790 33 1 -1.2927 -4.2679 0.6859 34 1 -0.6038 -4.4488 -0.9616 35 1 0.0649 -5.1046 2.5851 36 1 0.4254 -3.3838 2.3235 37 1 2.4763 -5.6159 2.6738 38 1 2.0721 -4.3564 3.8695 39 1 2.5298 -2.4294 4.5756 40 1 3.8429 -3.6052 4.8245 41 1 3.5369 -0.5458 6.6354 42 1 3.8478 -2.2967 6.8829 43 1 5.8039 -1.4944 7.9328 44 1 5.7922 0.0291 6.9967 45 1 7.4994 -1.8149 6.1291 46 1 3.7445 -4.7313 0.4744 47 1 3.8845 -2.9644 0.3497 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084956584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:01 Heat of formation + Delta-G solvation = -62.328789 kcal Electronic energy + Delta-G solvation = -29429.763590 eV Core-core repulsion = 25611.977790 eV Total energy + Delta-G solvation = -3817.785800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.70351 -40.94965 -39.33759 -37.30821 -36.42020 -34.64189 -34.01948 -32.79080 -30.99778 -30.00814 -29.59213 -27.00217 -26.46831 -24.94784 -23.81164 -22.74373 -21.73003 -21.53926 -20.45526 -19.51144 -18.42850 -18.35501 -17.82380 -17.54794 -16.96175 -16.59230 -16.12728 -15.94902 -15.60662 -15.55806 -15.10915 -14.85867 -14.57947 -14.28860 -14.15486 -14.01269 -13.69814 -13.57834 -13.34927 -13.18722 -13.04667 -12.95502 -12.76869 -12.64718 -12.51887 -12.31305 -12.20575 -12.05823 -11.87972 -11.64714 -11.35110 -11.22198 -11.09950 -10.76528 -10.66485 -10.41188 -9.99348 -9.34094 -8.78912 -7.83232 -5.12657 1.34119 1.36438 1.45270 1.65847 1.97982 2.29422 2.47661 2.49612 3.34414 3.42721 3.49640 3.57365 3.79443 3.88666 3.95742 4.01551 4.13842 4.29385 4.34419 4.37213 4.43442 4.52360 4.54449 4.66329 4.67487 4.71677 4.77937 4.80903 4.85424 4.91563 4.95470 5.07027 5.10763 5.18107 5.20910 5.23870 5.36240 5.54201 5.70056 5.75407 5.81891 5.84398 5.98508 6.09380 6.24781 6.74595 7.16990 7.37875 7.56096 7.84396 8.47451 9.27106 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.012217 B = 0.005342 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.343439 B = 5240.036513 C = 6543.628815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.061 4.061 3 Si 0.954 3.046 4 H -0.288 1.288 5 H -0.284 1.284 6 H -0.293 1.293 7 C -0.200 4.200 8 H 0.059 0.941 9 N -0.604 5.604 10 C 0.187 3.813 11 C -0.130 4.130 12 C -0.085 4.085 13 H 0.119 0.881 14 C -0.118 4.118 15 C 0.107 3.893 16 N -0.605 5.605 17 C 0.499 3.501 18 O -0.572 6.572 19 C -0.110 4.110 20 C -0.116 4.116 21 H 0.081 0.919 22 C -0.117 4.117 23 C 0.099 3.901 24 N -0.730 5.730 25 C 0.507 3.493 26 O -0.564 6.564 27 C 0.120 3.880 28 C 0.143 3.857 29 H 0.020 0.980 30 H 0.243 0.757 31 H -0.004 1.004 32 H 0.012 0.988 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.038 0.962 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.413 0.587 46 H 0.079 0.921 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.044 -11.934 19.091 22.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.254 4.254 3 Si 0.784 3.216 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.220 1.220 7 C -0.330 4.330 8 H 0.076 0.924 9 N -0.329 5.329 10 C 0.062 3.938 11 C -0.168 4.168 12 C -0.104 4.104 13 H 0.136 0.864 14 C -0.156 4.156 15 C -0.014 4.014 16 N -0.338 5.338 17 C 0.288 3.712 18 O -0.451 6.451 19 C -0.150 4.150 20 C -0.138 4.138 21 H 0.099 0.901 22 C -0.154 4.154 23 C -0.024 4.024 24 N -0.386 5.386 25 C 0.293 3.707 26 O -0.441 6.441 27 C -0.004 4.004 28 C 0.036 3.964 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.014 0.986 32 H 0.030 0.970 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.124 0.876 36 H 0.056 0.944 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.096 0.904 45 H 0.252 0.748 46 H 0.097 0.903 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.563 -11.528 18.273 21.897 hybrid contribution 0.977 1.762 -0.931 2.219 sum 4.541 -9.766 17.342 20.414 Atomic orbital electron populations 1.70126 1.05328 1.24594 1.59745 1.25239 0.96357 0.99631 1.04129 0.85516 0.77349 0.81212 0.77500 1.21514 1.20998 1.22029 1.18970 0.89850 0.83873 1.40334 0.92361 1.44452 1.02257 1.00199 1.86021 1.20978 0.83328 0.92385 0.97082 1.23070 0.98062 0.94823 1.00858 1.22143 0.93754 0.98804 0.95739 0.86355 1.21555 0.97525 1.01952 0.94534 1.21984 0.87904 0.93642 0.97881 1.47964 1.42971 1.35826 1.07064 1.21188 0.79593 0.79345 0.91051 1.90698 1.37940 1.43222 1.73203 1.21559 1.02505 1.00722 0.90197 1.21762 0.92157 0.99762 1.00111 0.90132 1.22824 0.97344 1.05779 0.89456 1.22365 0.87976 0.99230 0.92811 1.46282 1.13435 1.63786 1.15076 1.21206 0.90457 0.76813 0.82208 1.90775 1.73438 1.45305 1.34629 1.21091 0.97421 1.00644 0.81259 1.20988 0.92962 0.86346 0.96075 0.96251 0.94708 0.98552 0.96971 0.89576 0.91777 0.87623 0.94358 0.88803 0.87723 0.86167 0.86307 0.87288 0.87015 0.86607 0.90380 0.74762 0.90268 0.93966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.21 10.38 21.65 0.22 -58.99 16 2 C -0.06 -3.75 5.49 84.86 0.47 -3.28 16 3 Si 0.95 51.43 29.55 68.60 2.03 53.46 16 4 H -0.29 -15.44 7.11 99.48 0.71 -14.73 16 5 H -0.28 -14.78 7.11 99.48 0.71 -14.08 16 6 H -0.29 -16.05 7.11 99.48 0.71 -15.35 16 7 C -0.20 -12.11 9.70 84.03 0.81 -11.29 16 8 H 0.06 3.75 6.52 -2.91 -0.02 3.73 16 9 N -0.60 -31.61 3.20 -674.04 -2.16 -33.77 16 10 C 0.19 9.22 4.60 86.71 0.40 9.62 16 11 C -0.13 -4.44 6.30 32.16 0.20 -4.24 16 12 C -0.09 -2.56 3.60 -9.86 -0.04 -2.59 16 13 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 14 C -0.12 -3.13 4.96 30.08 0.15 -2.98 16 15 C 0.11 2.56 6.35 86.20 0.55 3.11 16 16 N -0.60 -21.80 2.97 -823.04 -2.44 -24.24 16 17 C 0.50 20.08 7.17 87.66 0.63 20.70 16 18 O -0.57 -29.88 13.32 18.35 0.24 -29.64 16 19 C -0.11 -2.94 3.47 29.85 0.10 -2.84 16 20 C -0.12 -3.10 2.55 -10.80 -0.03 -3.12 16 21 H 0.08 2.75 7.96 -2.39 -0.02 2.73 16 22 C -0.12 -1.51 6.72 31.73 0.21 -1.30 16 23 C 0.10 1.12 7.79 86.91 0.68 1.80 16 24 N -0.73 -14.60 6.24 -459.44 -2.87 -17.47 16 25 C 0.51 15.94 7.70 87.90 0.68 16.62 16 26 O -0.56 -24.59 15.39 18.35 0.28 -24.30 16 27 C 0.12 4.87 5.68 85.77 0.49 5.36 16 28 C 0.14 5.89 3.02 44.78 0.14 6.03 16 29 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.24 14.90 8.31 -92.71 -0.77 14.13 16 31 H 0.00 -0.22 7.57 -2.39 -0.02 -0.23 16 32 H 0.01 0.67 7.02 -2.39 -0.02 0.65 16 33 H 0.09 2.50 7.94 -2.39 -0.02 2.48 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.04 1.37 6.80 -2.39 -0.02 1.35 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.10 1.87 6.02 -2.39 -0.01 1.86 16 39 H 0.12 2.70 7.79 -2.39 -0.02 2.68 16 40 H 0.12 2.38 7.90 -2.39 -0.02 2.36 16 41 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.11 0.88 7.91 -2.39 -0.02 0.86 16 43 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.41 6.99 8.96 -92.70 -0.83 6.16 16 46 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 47 H 0.04 2.14 5.54 -2.39 -0.01 2.13 16 Total: -1.00 -93.34 357.00 0.90 -92.45 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.15 Total: 10.91 kcal Atomic # 6 Polarization: 26.16 SS G_CDS: 5.44 Total: 31.59 kcal Atomic # 7 Polarization: -127.22 SS G_CDS: -7.24 Total: -134.47 kcal Atomic # 8 Polarization: -54.47 SS G_CDS: 0.53 Total: -53.94 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 2.03 Total: 53.46 kcal Total: -93.34 0.90 -92.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084956584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.117 kcal (2) G-P(sol) polarization free energy of solvation -93.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds