Wall clock time and date at job start Fri Apr 10 2020 18:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99788 * 2 1 4 4 H 1.48498 * 109.46851 * 274.99453 * 3 2 1 5 5 H 1.48503 * 109.47302 * 34.99745 * 3 2 1 6 6 H 1.48504 * 109.47140 * 154.99690 * 3 2 1 7 7 C 1.38812 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99988 * 174.84012 * 7 2 1 9 9 N 1.36936 * 120.00260 * 354.83362 * 7 2 1 10 10 C 1.46658 * 125.63663 * 5.61004 * 9 7 2 11 11 C 1.54505 * 107.02747 * 182.09169 * 10 9 7 12 12 C 1.56025 * 102.60924 * 22.26867 * 11 10 9 13 13 H 1.09005 * 112.86079 * 202.91759 * 12 11 10 14 14 C 1.53093 * 106.38931 * 78.36762 * 12 11 10 15 15 C 1.53298 * 110.50960 * 195.32271 * 14 12 11 16 16 N 1.47146 * 107.73945 * 57.54523 * 15 14 12 17 17 C 1.34780 * 121.21493 * 122.71489 * 16 15 14 18 18 O 1.21289 * 119.99622 * 184.40702 * 17 16 15 19 19 C 1.50696 * 120.00289 * 4.40681 * 17 16 15 20 20 H 1.09005 * 109.32908 * 324.93704 * 19 17 16 21 21 C 1.53071 * 109.40349 * 84.72329 * 19 17 16 22 22 C 1.53338 * 108.45637 * 169.04918 * 21 19 17 23 23 C 1.52919 * 108.67285 * 292.45023 * 22 21 19 24 24 N 1.45755 * 110.48837 * 50.75505 * 23 22 21 25 25 C 1.33349 * 124.10601 * 340.94838 * 24 23 22 26 26 O 1.21280 * 118.24501 * 182.22636 * 25 24 23 27 27 C 1.46756 * 117.56714 * 302.43286 * 16 15 14 28 28 C 1.46463 * 126.06069 * 185.04589 * 9 7 2 29 29 H 1.08998 * 108.42499 * 269.22704 * 28 9 7 30 30 H 0.97001 * 120.00510 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.44988 * 62.47649 * 10 9 7 32 32 H 1.09005 * 109.62235 * 301.25028 * 10 9 7 33 33 H 1.08997 * 110.78223 * 263.98628 * 11 10 9 34 34 H 1.08997 * 110.93911 * 140.62345 * 11 10 9 35 35 H 1.09000 * 109.25307 * 315.71353 * 14 12 11 36 36 H 1.08997 * 109.25845 * 75.14811 * 14 12 11 37 37 H 1.08996 * 109.89577 * 297.98280 * 15 14 12 38 38 H 1.09008 * 109.85564 * 177.07994 * 15 14 12 39 39 H 1.09002 * 109.67214 * 49.29284 * 21 19 17 40 40 H 1.09000 * 109.67276 * 288.80102 * 21 19 17 41 41 H 1.08999 * 109.60728 * 52.20958 * 22 21 19 42 42 H 1.08999 * 109.60357 * 172.53298 * 22 21 19 43 43 H 1.09005 * 109.30004 * 171.06560 * 23 22 21 44 44 H 1.08996 * 109.30311 * 290.43795 * 23 22 21 45 45 H 0.97003 * 117.94285 * 160.92480 * 24 23 22 46 46 H 1.09003 * 109.23276 * 173.10236 * 27 16 15 47 47 H 1.08997 * 109.23047 * 292.46762 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3920 2.1074 -1.3948 5 1 1.5044 2.6199 0.8030 6 1 3.5965 1.4121 0.5918 7 6 2.0102 -1.2022 0.0005 8 1 3.0869 -1.2041 -0.0836 9 7 1.3298 -2.3856 0.1079 10 6 -0.1292 -2.5351 0.1119 11 6 -0.4294 -4.0382 0.3063 12 6 0.8804 -4.5640 0.9714 13 1 1.0271 -5.6347 0.8293 14 6 0.8088 -4.1588 2.4460 15 6 2.1874 -4.2832 3.1047 16 7 3.1234 -3.4358 2.3491 17 6 3.8196 -2.4528 2.9537 18 8 4.5243 -1.7161 2.2965 19 6 3.7226 -2.2689 4.4463 20 1 2.7103 -2.5058 4.7739 21 6 4.7140 -3.2066 5.1397 22 6 4.7991 -2.8147 6.6197 23 6 5.4568 -1.4381 6.7246 24 7 4.8010 -0.4901 5.8326 25 6 4.0390 -0.8424 4.7965 26 8 3.5775 0.0356 4.0987 27 6 3.2759 -3.7041 0.9144 28 6 1.9288 -3.7169 0.2263 29 1 2.0552 -4.1281 -0.7752 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5498 -2.1919 -0.8333 32 1 -0.5536 -1.9622 0.9365 33 1 -0.5986 -4.5261 -0.6536 34 1 -1.2838 -4.1824 0.9675 35 1 0.4648 -3.1271 2.5190 36 1 0.1041 -4.8095 2.9638 37 1 2.5214 -5.3203 3.0731 38 1 2.1355 -3.9434 4.1392 39 1 5.6962 -3.1092 4.6771 40 1 4.3678 -4.2364 5.0521 41 1 3.7966 -2.7744 7.0456 42 1 5.3962 -3.5499 7.1590 43 1 5.3799 -1.0794 7.7510 44 1 6.5091 -1.5199 6.4527 45 1 4.9264 0.4565 6.0037 46 1 3.8993 -2.9292 0.4684 47 1 3.7571 -4.6728 0.7795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084964692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:07 Heat of formation + Delta-G solvation = -33.479448 kcal Electronic energy + Delta-G solvation = -29930.232214 eV Core-core repulsion = 26113.697416 eV Total energy + Delta-G solvation = -3816.534798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.76749 -39.39894 -37.72018 -36.41524 -34.90843 -33.14846 -32.69470 -31.08790 -30.08588 -28.79287 -28.28655 -25.30548 -24.47107 -23.65992 -22.73829 -22.47184 -20.36217 -19.85866 -18.85011 -18.22151 -17.37424 -16.87141 -16.44424 -16.15064 -15.26092 -15.01022 -14.81685 -14.64373 -14.07493 -14.02453 -13.85934 -13.78701 -13.57130 -13.32772 -12.96733 -12.80795 -12.50788 -11.99312 -11.83979 -11.70093 -11.53414 -11.42680 -11.36128 -11.15529 -11.03589 -10.82587 -10.64058 -10.51645 -9.93689 -9.77242 -9.75851 -9.56930 -9.52396 -9.38319 -9.14188 -9.00120 -8.32700 -8.03468 -6.62372 -5.49077 -2.80568 2.78171 3.02590 3.37874 3.58757 3.62931 3.70589 3.85754 4.40515 4.48313 4.54061 4.65912 4.77173 4.92586 5.00218 5.14119 5.18885 5.25411 5.33679 5.40735 5.47000 5.55875 5.56619 5.62795 5.64929 5.74988 5.81703 5.87358 5.93500 6.03139 6.09494 6.19865 6.32369 6.37643 6.51162 6.55838 6.68912 6.81268 6.87435 7.02120 7.16203 7.37547 7.70662 7.80614 7.94366 8.07141 8.43343 8.46760 8.76764 9.46075 10.06853 10.68035 11.62790 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.012291 B = 0.006300 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.488179 B = 4443.150309 C = 5990.865898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.002 4.002 3 Si 0.902 3.098 4 H -0.296 1.296 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.209 4.209 8 H 0.079 0.921 9 N -0.587 5.587 10 C 0.178 3.822 11 C -0.144 4.144 12 C -0.101 4.101 13 H 0.074 0.926 14 C -0.123 4.123 15 C 0.109 3.891 16 N -0.592 5.592 17 C 0.539 3.461 18 O -0.513 6.513 19 C -0.124 4.124 20 H 0.121 0.879 21 C -0.112 4.112 22 C -0.134 4.134 23 C 0.111 3.889 24 N -0.727 5.727 25 C 0.530 3.470 26 O -0.509 6.509 27 C 0.117 3.883 28 C 0.154 3.846 29 H 0.025 0.975 30 H 0.248 0.752 31 H 0.035 0.965 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.400 0.600 46 H 0.094 0.906 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.108 -13.494 15.576 21.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.733 3.267 4 H -0.224 1.224 5 H -0.220 1.220 6 H -0.198 1.198 7 C -0.337 4.337 8 H 0.097 0.903 9 N -0.312 5.312 10 C 0.053 3.947 11 C -0.183 4.183 12 C -0.121 4.121 13 H 0.092 0.908 14 C -0.161 4.161 15 C -0.014 4.014 16 N -0.326 5.326 17 C 0.324 3.676 18 O -0.387 6.387 19 C -0.148 4.148 20 H 0.139 0.861 21 C -0.150 4.150 22 C -0.172 4.172 23 C -0.013 4.013 24 N -0.382 5.382 25 C 0.314 3.686 26 O -0.382 6.382 27 C -0.007 4.007 28 C 0.045 3.955 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.235 0.765 46 H 0.113 0.887 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.169 -12.596 14.765 20.690 hybrid contribution 0.258 1.221 0.201 1.264 sum 7.427 -11.375 14.965 20.212 Atomic orbital electron populations 1.69969 1.04869 1.24622 1.58101 1.24657 0.95494 0.97440 1.02184 0.86192 0.80007 0.83922 0.76574 1.22365 1.22020 1.19780 1.18966 0.90841 0.82038 1.41902 0.90290 1.44105 1.01375 1.00205 1.85565 1.21097 0.84560 0.88405 1.00603 1.23178 0.96057 1.00062 0.98958 1.22365 0.97304 0.97667 0.94764 0.90751 1.21915 0.95417 1.03452 0.95359 1.21799 0.90148 0.94220 0.95223 1.47665 1.42103 1.33476 1.09348 1.19417 0.80509 0.79947 0.87722 1.90742 1.40347 1.42163 1.65426 1.21414 1.03186 0.94231 0.96015 0.86133 1.21613 0.99552 0.98934 0.94855 1.21872 1.02333 0.96375 0.96637 1.21330 0.96575 0.89683 0.93759 1.45376 1.51811 1.10484 1.30536 1.19402 0.78564 0.90662 0.79979 1.90912 1.50036 1.49887 1.47394 1.21362 0.99019 1.00377 0.79909 1.20715 0.91151 0.88300 0.95289 0.95735 0.94236 0.94697 0.93233 0.92887 0.92408 0.89924 0.92134 0.91683 0.90701 0.90446 0.89951 0.90660 0.89403 0.90696 0.91856 0.76480 0.88741 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.16 10.34 55.49 0.57 -28.58 16 2 C 0.00 -0.08 5.48 -17.43 -0.10 -0.17 16 3 Si 0.90 25.84 29.56 -169.99 -5.02 20.81 16 4 H -0.30 -8.22 7.11 56.52 0.40 -7.82 16 5 H -0.29 -8.48 7.11 56.52 0.40 -8.08 16 6 H -0.27 -8.16 7.11 56.52 0.40 -7.76 16 7 C -0.21 -6.23 9.64 -15.06 -0.15 -6.38 16 8 H 0.08 2.43 6.61 -52.49 -0.35 2.09 16 9 N -0.59 -15.17 3.13 -165.03 -0.52 -15.69 16 10 C 0.18 4.41 4.60 -3.17 -0.01 4.40 16 11 C -0.14 -2.67 6.32 -24.32 -0.15 -2.82 16 12 C -0.10 -1.68 3.68 -88.43 -0.33 -2.01 16 13 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 14 C -0.12 -1.91 5.05 -26.53 -0.13 -2.05 16 15 C 0.11 1.46 6.35 -3.54 -0.02 1.44 16 16 N -0.59 -10.50 2.96 -173.81 -0.51 -11.02 16 17 C 0.54 10.64 6.52 -10.99 -0.07 10.56 16 18 O -0.51 -12.75 15.21 -12.03 -0.18 -12.93 16 19 C -0.12 -1.87 2.00 -93.10 -0.19 -2.05 16 20 H 0.12 1.64 6.15 -51.93 -0.32 1.32 16 21 C -0.11 -1.10 5.32 -26.52 -0.14 -1.24 16 22 C -0.13 -0.92 6.02 -26.60 -0.16 -1.08 16 23 C 0.11 0.86 7.17 -4.49 -0.03 0.82 16 24 N -0.73 -9.08 5.45 -61.36 -0.33 -9.42 16 25 C 0.53 9.35 6.90 -11.83 -0.08 9.27 16 26 O -0.51 -12.37 16.67 -12.02 -0.20 -12.57 16 27 C 0.12 2.22 5.67 -4.78 -0.03 2.19 16 28 C 0.15 3.14 3.00 -68.30 -0.21 2.94 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 31 H 0.03 0.97 7.73 -51.93 -0.40 0.56 16 32 H 0.05 1.38 6.82 -51.93 -0.35 1.02 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.97 7.98 -51.93 -0.41 0.56 16 35 H 0.08 1.66 6.84 -51.93 -0.36 1.31 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.84 5.47 -51.92 -0.28 0.56 16 39 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 42 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.40 4.69 8.80 -40.82 -0.36 4.33 16 46 H 0.09 2.15 5.59 -51.93 -0.29 1.86 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -40.11 356.29 -9.95 -50.06 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.33 Total: 0.14 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: -1.80 Total: 13.82 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -0.79 Total: -64.70 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.38 Total: -25.50 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.02 Total: 20.81 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -40.11 -9.95 -50.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084964692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.581 kcal (2) G-P(sol) polarization free energy of solvation -40.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds