Wall clock time and date at job start Fri Apr 10 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 110.43326 * 2 1 4 4 O 1.21275 * 120.00262 * 242.65608 * 3 2 1 5 5 N 1.34781 * 119.99952 * 62.39137 * 3 2 1 6 6 C 1.47152 * 121.20969 * 355.01080 * 5 3 2 7 7 C 1.53334 * 107.71423 * 122.69771 * 6 5 3 8 8 C 1.53087 * 110.50327 * 57.56718 * 7 6 5 9 9 H 1.08998 * 113.06273 * 70.86734 * 8 7 6 10 10 C 1.56027 * 106.39562 * 195.29420 * 8 7 6 11 11 C 1.54506 * 102.61393 * 78.38541 * 10 8 7 12 12 N 1.47436 * 107.14780 * 22.83645 * 11 10 8 13 13 C 1.36932 * 126.06162 * 181.59261 * 12 11 10 14 14 H 1.08004 * 120.00596 * 180.02562 * 13 12 11 15 15 C 1.38818 * 120.00020 * 0.04485 * 13 12 11 16 16 N 1.31623 * 119.99620 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00051 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47152 * 90.00494 * 17 15 13 19 19 H 1.48506 * 109.46998 * 210.00092 * 17 15 13 20 20 H 1.48500 * 109.47241 * 330.00353 * 17 15 13 21 21 C 1.46463 * 107.88049 * 1.63428 * 12 11 10 22 22 H 1.08999 * 108.42348 * 89.23049 * 21 12 11 23 23 C 1.46751 * 121.21574 * 175.29586 * 5 3 2 24 24 C 1.54633 * 110.48507 * 237.46015 * 2 1 3 25 25 C 1.54830 * 101.60141 * 216.43098 * 24 2 1 26 26 N 1.46760 * 105.49720 * 25.43280 * 25 24 2 27 27 C 1.34426 * 111.29992 * 342.96427 * 26 25 24 28 28 O 1.21273 * 124.93968 * 180.36854 * 27 26 25 29 29 H 1.09006 * 109.47085 * 70.70387 * 1 2 3 30 30 H 1.08997 * 109.47521 * 190.70933 * 1 2 3 31 31 H 1.09005 * 109.47222 * 310.70697 * 1 2 3 32 32 H 1.09006 * 109.75986 * 242.34049 * 6 5 3 33 33 H 1.09000 * 109.76646 * 3.09627 * 6 5 3 34 34 H 1.09006 * 109.39476 * 297.24193 * 7 6 5 35 35 H 1.09005 * 109.16340 * 177.75045 * 7 6 5 36 36 H 1.08994 * 110.78385 * 320.09694 * 10 8 7 37 37 H 1.09004 * 110.77881 * 196.65728 * 10 8 7 38 38 H 1.09002 * 109.89644 * 263.46143 * 11 10 8 39 39 H 1.08991 * 109.90622 * 142.22048 * 11 10 8 40 40 H 0.96998 * 119.99815 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.22563 * 352.83249 * 23 5 3 42 42 H 1.09004 * 109.23038 * 112.23202 * 23 5 3 43 43 H 1.08994 * 110.96768 * 334.51099 * 24 2 1 44 44 H 1.09003 * 110.96525 * 98.27514 * 24 2 1 45 45 H 1.09004 * 110.24915 * 266.41443 * 25 24 2 46 46 H 1.08999 * 110.28952 * 144.47035 * 25 24 2 47 47 H 0.97001 * 124.34589 * 162.93732 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0561 1.4121 0.0000 4 8 2.7199 1.8120 -0.9329 5 7 1.7845 2.2325 1.0343 6 6 0.8886 1.8144 2.1243 7 6 1.6710 1.9222 3.4386 8 6 2.1858 3.3497 3.6406 9 1 1.3925 4.0613 3.8697 10 6 3.2718 3.2723 4.7581 11 6 4.5007 2.7266 3.9971 12 7 4.3069 3.0478 2.5713 13 6 5.1525 2.7133 1.5475 14 1 4.9135 3.0002 0.5340 15 6 6.3167 2.0050 1.8121 16 7 6.6074 1.6546 3.0470 17 14 7.4698 1.5479 0.4153 18 1 8.4676 2.6307 0.2228 19 1 8.1712 0.2817 0.7468 20 1 6.6872 1.3680 -0.8339 21 6 3.0502 3.7891 2.4441 22 1 3.2639 4.8518 2.5588 23 6 2.3665 3.5775 1.1115 24 6 2.0712 -0.7792 -1.2211 25 6 3.3233 -1.4656 -0.6226 26 7 3.0582 -1.5786 0.8165 27 6 2.0594 -0.7623 1.1946 28 8 1.6429 -0.6534 2.3284 29 1 -0.3633 0.3396 -0.9700 30 1 -0.3634 -1.0097 0.1910 31 1 -0.3634 0.6703 0.7791 32 1 0.0171 2.4683 2.1563 33 1 0.5711 0.7838 1.9656 34 1 2.5169 1.2352 3.4137 35 1 1.0158 1.6556 4.2679 36 1 2.9675 2.5833 5.5460 37 1 3.4779 4.2617 5.1664 38 1 4.5688 1.6466 4.1282 39 1 5.4080 3.2054 4.3654 40 1 7.4207 1.1593 3.2319 41 1 3.0956 3.6995 0.3106 42 1 1.5756 4.3182 0.9928 43 1 1.3471 -1.5178 -1.5646 44 1 2.3449 -0.0989 -2.0277 45 1 4.2084 -0.8536 -0.7962 46 1 3.4575 -2.4548 -1.0602 47 1 3.5415 -2.1671 1.4174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085030613.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:41 Heat of formation + Delta-G solvation = -15.796403 kcal Electronic energy + Delta-G solvation = -30997.883561 eV Core-core repulsion = 27182.115557 eV Total energy + Delta-G solvation = -3815.768004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.24765 -39.15677 -37.87117 -36.22048 -34.85850 -33.12886 -32.74322 -30.92665 -29.25762 -28.42175 -28.22541 -25.66946 -24.47094 -24.00597 -22.38621 -22.02992 -21.08866 -19.89150 -18.90497 -18.06652 -17.20392 -17.12603 -16.46483 -15.68984 -15.41358 -14.84409 -14.74937 -14.22243 -14.04589 -13.88289 -13.76311 -13.54569 -13.41088 -13.12032 -12.65403 -12.56190 -12.43854 -12.22391 -12.12427 -11.92039 -11.45328 -11.28740 -11.25312 -11.08540 -11.02570 -10.76400 -10.68196 -10.61624 -10.07306 -9.84318 -9.72962 -9.56215 -9.50108 -9.29182 -9.08697 -8.88169 -8.49453 -8.01928 -6.70760 -5.60392 -2.91688 2.57626 3.12568 3.43581 3.48309 3.49712 3.54304 3.55150 4.30778 4.46618 4.58506 4.68048 4.93761 5.07506 5.25366 5.34963 5.36496 5.49860 5.52500 5.60409 5.63189 5.64763 5.73413 5.84608 5.88709 5.91656 5.95331 6.05101 6.11939 6.14457 6.19684 6.36054 6.40519 6.45419 6.54955 6.71756 6.72938 6.87224 6.90349 7.14606 7.17394 7.26493 7.69142 7.72507 7.93708 7.95869 8.34928 8.39964 8.62557 9.32794 9.94092 10.60700 11.51714 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011070 B = 0.008346 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.767124 B = 3354.232758 C = 4592.993327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C 0.543 3.457 4 O -0.533 6.533 5 N -0.582 5.582 6 C 0.079 3.921 7 C -0.108 4.108 8 C -0.106 4.106 9 H 0.072 0.928 10 C -0.144 4.144 11 C 0.181 3.819 12 N -0.587 5.587 13 C -0.210 4.210 14 H 0.079 0.921 15 C -0.009 4.009 16 N -0.923 5.923 17 Si 0.899 3.101 18 H -0.291 1.291 19 H -0.294 1.294 20 H -0.278 1.278 21 C 0.154 3.846 22 H 0.025 0.975 23 C 0.114 3.886 24 C -0.116 4.116 25 C 0.098 3.902 26 N -0.721 5.721 27 C 0.537 3.463 28 O -0.510 6.510 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.122 0.878 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.044 0.956 39 H 0.039 0.961 40 H 0.248 0.752 41 H 0.093 0.907 42 H 0.054 0.946 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.778 -4.791 -4.357 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 C 0.329 3.671 4 O -0.410 6.410 5 N -0.313 5.313 6 C -0.043 4.043 7 C -0.146 4.146 8 C -0.125 4.125 9 H 0.090 0.910 10 C -0.182 4.182 11 C 0.056 3.944 12 N -0.313 5.313 13 C -0.338 4.338 14 H 0.097 0.903 15 C -0.204 4.204 16 N -0.572 5.572 17 Si 0.730 3.270 18 H -0.218 1.218 19 H -0.220 1.220 20 H -0.204 1.204 21 C 0.046 3.954 22 H 0.042 0.958 23 C -0.010 4.010 24 C -0.154 4.154 25 C -0.026 4.026 26 N -0.375 5.375 27 C 0.322 3.678 28 O -0.386 6.386 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.140 0.860 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.111 0.889 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.126 0.874 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -13.462 -4.559 -4.368 14.869 hybrid contribution 1.155 -0.496 -0.285 1.289 sum -12.307 -5.055 -4.653 14.095 Atomic orbital electron populations 1.22016 0.90367 1.03678 1.03784 1.21583 0.98924 0.95000 0.97101 1.19366 0.79905 0.85352 0.82475 1.90654 1.39475 1.75745 1.35142 1.47723 1.46392 1.15650 1.21580 1.22683 0.91563 1.02846 0.87197 1.21759 1.00672 0.96796 0.95407 1.22453 0.96605 0.96658 0.96815 0.90951 1.23155 0.97796 1.00022 0.97239 1.21181 0.92204 0.98520 0.82466 1.44261 1.19064 1.64315 1.03623 1.19003 0.98876 1.28515 0.87418 0.90340 1.24691 0.98374 1.01141 0.96235 1.69975 1.25941 1.44303 1.16938 0.86273 0.81156 0.77610 0.81919 1.21808 1.22007 1.20386 1.20695 0.87735 0.95208 0.91807 0.95770 1.21417 0.97154 0.81769 1.00623 1.22731 0.96496 0.99126 0.97002 1.22181 0.99106 1.01290 0.80045 1.46004 1.36776 1.43885 1.10875 1.20122 0.79776 0.79230 0.88706 1.90671 1.61485 1.65316 1.21163 0.91037 0.91276 0.89966 0.92850 0.86041 0.89603 0.92632 0.92359 0.92937 0.93781 0.94288 0.94168 0.88879 0.92746 0.89594 0.87366 0.90266 0.90194 0.74782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.05 37.16 0.30 -1.32 16 2 C -0.12 -1.79 0.56 -155.67 -0.09 -1.87 16 3 C 0.54 10.28 6.56 -10.99 -0.07 10.21 16 4 O -0.53 -11.61 14.93 5.56 0.08 -11.53 16 5 N -0.58 -10.81 2.96 -173.79 -0.51 -11.33 16 6 C 0.08 1.29 4.31 -3.51 -0.02 1.27 16 7 C -0.11 -1.97 4.34 -26.51 -0.12 -2.09 16 8 C -0.11 -1.92 3.68 -88.43 -0.33 -2.24 16 9 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 10 C -0.14 -2.82 6.33 -24.32 -0.15 -2.97 16 11 C 0.18 4.52 4.61 -2.74 -0.01 4.50 16 12 N -0.59 -14.98 3.20 -164.42 -0.53 -15.51 16 13 C -0.21 -5.91 9.70 -15.06 -0.15 -6.06 16 14 H 0.08 2.27 6.51 -52.48 -0.34 1.92 16 15 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 16 N -0.92 -27.63 10.38 55.49 0.58 -27.06 16 17 Si 0.90 23.01 29.55 -169.99 -5.02 17.98 16 18 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 19 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 21 C 0.15 3.23 2.97 -68.30 -0.20 3.03 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 23 C 0.11 2.22 5.66 -4.78 -0.03 2.19 16 24 C -0.12 -1.44 6.09 -24.91 -0.15 -1.59 16 25 C 0.10 1.29 7.79 -2.94 -0.02 1.27 16 26 N -0.72 -10.89 6.24 -59.01 -0.37 -11.26 16 27 C 0.54 9.04 6.81 -10.86 -0.07 8.97 16 28 O -0.51 -9.55 12.92 5.56 0.07 -9.48 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 31 H 0.08 0.97 4.87 -51.93 -0.25 0.72 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.12 1.93 2.15 -51.93 -0.11 1.82 16 34 H 0.09 1.95 5.85 -51.93 -0.30 1.65 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.06 7.97 -51.93 -0.41 0.65 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.04 1.24 7.04 -51.93 -0.37 0.87 16 39 H 0.04 1.08 7.57 -51.93 -0.39 0.69 16 40 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.09 2.08 5.57 -51.93 -0.29 1.79 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.09 0.78 7.91 -51.93 -0.41 0.37 16 44 H 0.11 1.46 6.90 -51.93 -0.36 1.10 16 45 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.41 5.79 8.96 -40.82 -0.37 5.42 16 LS Contribution 345.45 15.07 5.21 5.21 Total: -1.00 -33.87 345.45 -8.66 -42.54 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.97 Total: 7.49 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: -1.20 Total: 12.94 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: -0.83 Total: -65.15 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: 0.15 Total: -21.01 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.87 -8.66 -42.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085030613.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.742 kcal (2) G-P(sol) polarization free energy of solvation -33.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds