Wall clock time and date at job start Fri Apr 10 2020 18:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 110.43326 * 2 1 4 4 O 1.21275 * 120.00262 * 242.65608 * 3 2 1 5 5 N 1.34781 * 119.99952 * 62.39137 * 3 2 1 6 6 C 1.47152 * 121.20969 * 355.01080 * 5 3 2 7 7 C 1.53334 * 107.71423 * 122.69771 * 6 5 3 8 8 C 1.53087 * 110.50327 * 57.56718 * 7 6 5 9 9 H 1.08998 * 113.06273 * 70.86734 * 8 7 6 10 10 C 1.56027 * 106.39562 * 195.29420 * 8 7 6 11 11 C 1.54506 * 102.61393 * 78.38541 * 10 8 7 12 12 N 1.47436 * 107.14780 * 22.83645 * 11 10 8 13 13 C 1.36932 * 126.06162 * 181.59261 * 12 11 10 14 14 H 1.08004 * 120.00596 * 180.02562 * 13 12 11 15 15 C 1.38818 * 120.00020 * 0.04485 * 13 12 11 16 16 N 1.31623 * 119.99620 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00051 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47152 * 90.00494 * 17 15 13 19 19 H 1.48506 * 109.46998 * 210.00092 * 17 15 13 20 20 H 1.48500 * 109.47241 * 330.00353 * 17 15 13 21 21 C 1.46463 * 107.88049 * 1.63428 * 12 11 10 22 22 H 1.08999 * 108.42348 * 89.23049 * 21 12 11 23 23 C 1.46751 * 121.21574 * 175.29586 * 5 3 2 24 24 C 1.54633 * 110.48507 * 237.46015 * 2 1 3 25 25 C 1.54830 * 101.60141 * 216.43098 * 24 2 1 26 26 N 1.46760 * 105.49720 * 25.43280 * 25 24 2 27 27 C 1.34426 * 111.29992 * 342.96427 * 26 25 24 28 28 O 1.21273 * 124.93968 * 180.36854 * 27 26 25 29 29 H 1.09006 * 109.47085 * 70.70387 * 1 2 3 30 30 H 1.08997 * 109.47521 * 190.70933 * 1 2 3 31 31 H 1.09005 * 109.47222 * 310.70697 * 1 2 3 32 32 H 1.09006 * 109.75986 * 242.34049 * 6 5 3 33 33 H 1.09000 * 109.76646 * 3.09627 * 6 5 3 34 34 H 1.09006 * 109.39476 * 297.24193 * 7 6 5 35 35 H 1.09005 * 109.16340 * 177.75045 * 7 6 5 36 36 H 1.08994 * 110.78385 * 320.09694 * 10 8 7 37 37 H 1.09004 * 110.77881 * 196.65728 * 10 8 7 38 38 H 1.09002 * 109.89644 * 263.46143 * 11 10 8 39 39 H 1.08991 * 109.90622 * 142.22048 * 11 10 8 40 40 H 0.96998 * 119.99815 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.22563 * 352.83249 * 23 5 3 42 42 H 1.09004 * 109.23038 * 112.23202 * 23 5 3 43 43 H 1.08994 * 110.96768 * 334.51099 * 24 2 1 44 44 H 1.09003 * 110.96525 * 98.27514 * 24 2 1 45 45 H 1.09004 * 110.24915 * 266.41443 * 25 24 2 46 46 H 1.08999 * 110.28952 * 144.47035 * 25 24 2 47 47 H 0.97001 * 124.34589 * 162.93732 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0561 1.4121 0.0000 4 8 2.7199 1.8120 -0.9329 5 7 1.7845 2.2325 1.0343 6 6 0.8886 1.8144 2.1243 7 6 1.6710 1.9222 3.4386 8 6 2.1858 3.3497 3.6406 9 1 1.3925 4.0613 3.8697 10 6 3.2718 3.2723 4.7581 11 6 4.5007 2.7266 3.9971 12 7 4.3069 3.0478 2.5713 13 6 5.1525 2.7133 1.5475 14 1 4.9135 3.0002 0.5340 15 6 6.3167 2.0050 1.8121 16 7 6.6074 1.6546 3.0470 17 14 7.4698 1.5479 0.4153 18 1 8.4676 2.6307 0.2228 19 1 8.1712 0.2817 0.7468 20 1 6.6872 1.3680 -0.8339 21 6 3.0502 3.7891 2.4441 22 1 3.2639 4.8518 2.5588 23 6 2.3665 3.5775 1.1115 24 6 2.0712 -0.7792 -1.2211 25 6 3.3233 -1.4656 -0.6226 26 7 3.0582 -1.5786 0.8165 27 6 2.0594 -0.7623 1.1946 28 8 1.6429 -0.6534 2.3284 29 1 -0.3633 0.3396 -0.9700 30 1 -0.3634 -1.0097 0.1910 31 1 -0.3634 0.6703 0.7791 32 1 0.0171 2.4683 2.1563 33 1 0.5711 0.7838 1.9656 34 1 2.5169 1.2352 3.4137 35 1 1.0158 1.6556 4.2679 36 1 2.9675 2.5833 5.5460 37 1 3.4779 4.2617 5.1664 38 1 4.5688 1.6466 4.1282 39 1 5.4080 3.2054 4.3654 40 1 7.4207 1.1593 3.2319 41 1 3.0956 3.6995 0.3106 42 1 1.5756 4.3182 0.9928 43 1 1.3471 -1.5178 -1.5646 44 1 2.3449 -0.0989 -2.0277 45 1 4.2084 -0.8536 -0.7962 46 1 3.4575 -2.4548 -1.0602 47 1 3.5415 -2.1671 1.4174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085030613.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:39 Heat of formation + Delta-G solvation = -40.949189 kcal Electronic energy + Delta-G solvation = -30998.974267 eV Core-core repulsion = 27182.115557 eV Total energy + Delta-G solvation = -3816.858711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.53109 -40.66932 -39.39385 -37.53213 -36.42960 -34.72166 -34.27203 -32.69467 -30.81394 -30.04455 -29.56630 -26.90689 -26.35956 -25.52385 -23.88618 -23.26527 -22.41156 -21.76157 -20.39463 -19.52844 -18.49494 -18.49345 -18.32954 -17.18228 -16.83327 -16.67714 -16.22718 -15.87329 -15.62625 -15.39144 -15.08009 -14.98044 -14.76675 -14.44623 -14.22709 -14.05910 -13.79339 -13.52127 -13.38050 -13.18904 -13.16075 -12.98708 -12.83929 -12.68372 -12.47614 -12.39130 -12.22456 -12.08432 -12.05328 -11.68163 -11.44019 -11.31480 -11.18735 -10.71476 -10.68724 -10.42745 -10.10252 -9.48270 -8.82113 -7.83825 -5.14789 1.23416 1.33479 1.34759 1.45512 1.76593 2.13805 2.38400 2.45688 3.19084 3.31774 3.34268 3.49109 3.62466 3.85623 3.90462 3.98999 4.08500 4.12220 4.33233 4.35874 4.46634 4.49884 4.59535 4.61389 4.66667 4.70757 4.73909 4.76012 4.87092 4.91833 4.99097 5.01959 5.08285 5.12490 5.17202 5.23261 5.34943 5.49988 5.66308 5.68982 5.70559 5.75112 5.79050 5.98310 6.20881 6.53553 7.12388 7.14598 7.19732 7.81267 8.46682 9.26805 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011070 B = 0.008346 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.767124 B = 3354.232758 C = 4592.993327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 C 0.530 3.470 4 O -0.573 6.573 5 N -0.587 5.587 6 C 0.079 3.921 7 C -0.104 4.104 8 C -0.089 4.089 9 H 0.120 0.880 10 C -0.131 4.131 11 C 0.192 3.808 12 N -0.603 5.603 13 C -0.203 4.203 14 H 0.066 0.934 15 C -0.065 4.065 16 N -0.949 5.949 17 Si 0.955 3.045 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.278 1.278 21 C 0.142 3.858 22 H 0.029 0.971 23 C 0.116 3.884 24 C -0.108 4.108 25 C 0.094 3.906 26 N -0.723 5.723 27 C 0.524 3.476 28 O -0.535 6.535 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.129 0.871 34 H 0.033 0.967 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.001 0.999 39 H -0.001 1.001 40 H 0.241 0.759 41 H 0.056 0.944 42 H 0.094 0.906 43 H 0.131 0.869 44 H 0.096 0.904 45 H 0.041 0.959 46 H 0.123 0.877 47 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.094 -4.905 -4.898 18.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.124 4.124 3 C 0.317 3.683 4 O -0.453 6.453 5 N -0.317 5.317 6 C -0.042 4.042 7 C -0.142 4.142 8 C -0.108 4.108 9 H 0.138 0.862 10 C -0.169 4.169 11 C 0.067 3.933 12 N -0.328 5.328 13 C -0.332 4.332 14 H 0.084 0.916 15 C -0.257 4.257 16 N -0.599 5.599 17 Si 0.785 3.215 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.035 3.965 22 H 0.046 0.954 23 C -0.007 4.007 24 C -0.146 4.146 25 C -0.030 4.030 26 N -0.377 5.377 27 C 0.309 3.691 28 O -0.413 6.413 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.146 0.854 34 H 0.052 0.948 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.019 0.981 39 H 0.017 0.983 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.112 0.888 43 H 0.149 0.851 44 H 0.114 0.886 45 H 0.060 0.940 46 H 0.141 0.859 47 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -16.810 -4.662 -4.914 18.123 hybrid contribution 2.215 -0.419 -0.109 2.257 sum -14.594 -5.082 -5.023 16.250 Atomic orbital electron populations 1.22059 0.87253 1.05121 1.04918 1.21664 1.01351 0.92142 0.97203 1.20132 0.79293 0.86841 0.81990 1.90628 1.41131 1.76861 1.36705 1.47899 1.46428 1.15295 1.22101 1.22879 0.91770 1.04377 0.85130 1.21674 0.99467 0.95484 0.97608 1.22505 0.96669 0.97666 0.93993 0.86213 1.23031 0.95562 1.00875 0.97476 1.20880 0.93536 0.95733 0.83175 1.44441 1.20678 1.64425 1.03235 1.19057 0.99145 1.27352 0.87690 0.91570 1.25357 1.00079 1.02113 0.98168 1.70184 1.26021 1.45348 1.18370 0.85401 0.79363 0.77244 0.79517 1.21524 1.21798 1.20378 1.21003 0.86611 0.94660 0.94221 0.95366 1.21301 0.97567 0.83673 0.98189 1.22823 0.96815 0.99440 0.95529 1.22331 0.98216 1.03147 0.79260 1.46171 1.36210 1.43445 1.11894 1.20566 0.80088 0.79447 0.88956 1.90641 1.62409 1.66108 1.22146 0.89071 0.89168 0.90141 0.88913 0.85411 0.94774 0.90211 0.90812 0.91141 0.98115 0.98284 0.94965 0.92577 0.88759 0.85133 0.88581 0.94038 0.85853 0.74652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 8.05 71.98 0.58 -2.07 16 2 C -0.12 -3.31 0.56 -52.93 -0.03 -3.34 16 3 C 0.53 19.85 6.56 87.66 0.57 20.43 16 4 O -0.57 -25.50 14.93 -3.01 -0.04 -25.54 16 5 N -0.59 -21.03 2.96 -822.15 -2.43 -23.47 16 6 C 0.08 2.35 4.31 86.37 0.37 2.72 16 7 C -0.10 -3.57 4.34 30.74 0.13 -3.43 16 8 C -0.09 -2.97 3.68 -9.38 -0.03 -3.01 16 9 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 10 C -0.13 -4.97 6.33 32.16 0.20 -4.76 16 11 C 0.19 9.96 4.61 86.71 0.40 10.36 16 12 N -0.60 -31.66 3.20 -674.10 -2.15 -33.81 16 13 C -0.20 -11.93 9.70 84.04 0.81 -11.12 16 14 H 0.07 4.01 6.51 -2.91 -0.02 3.99 16 15 C -0.06 -3.91 5.49 84.86 0.47 -3.44 16 16 N -0.95 -59.81 10.38 21.65 0.22 -59.59 16 17 Si 0.95 49.42 29.55 68.60 2.03 51.45 16 18 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 19 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 20 H -0.28 -14.23 7.11 99.48 0.71 -13.52 16 21 C 0.14 5.82 2.97 44.77 0.13 5.95 16 22 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 23 C 0.12 4.41 5.66 85.77 0.49 4.90 16 24 C -0.11 -2.48 6.09 31.78 0.19 -2.29 16 25 C 0.09 2.41 7.79 86.95 0.68 3.09 16 26 N -0.72 -21.77 6.24 -459.21 -2.87 -24.64 16 27 C 0.52 17.32 6.81 87.90 0.60 17.92 16 28 O -0.54 -19.80 12.92 -3.01 -0.04 -19.84 16 29 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.09 1.40 8.09 -2.39 -0.02 1.38 16 31 H 0.08 1.60 4.87 -2.38 -0.01 1.59 16 32 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.13 3.73 2.15 -2.39 -0.01 3.72 16 34 H 0.03 1.54 5.85 -2.38 -0.01 1.53 16 35 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.07 2.57 7.97 -2.39 -0.02 2.55 16 37 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 38 H 0.00 0.04 7.04 -2.39 -0.02 0.02 16 39 H 0.00 -0.06 7.57 -2.39 -0.02 -0.08 16 40 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 41 H 0.06 2.56 5.57 -2.39 -0.01 2.54 16 42 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 43 H 0.13 1.82 7.91 -2.39 -0.02 1.80 16 44 H 0.10 2.50 6.90 -2.39 -0.02 2.48 16 45 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.41 11.82 8.96 -92.71 -0.83 10.98 16 Total: -1.00 -80.47 345.45 0.46 -80.01 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.17 Total: 23.54 kcal Atomic # 6 Polarization: 26.32 SS G_CDS: 5.57 Total: 31.89 kcal Atomic # 7 Polarization: -134.28 SS G_CDS: -7.23 Total: -141.51 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -0.08 Total: -45.38 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 2.03 Total: 51.45 kcal Total: -80.47 0.46 -80.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085030613.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.061 kcal (2) G-P(sol) polarization free energy of solvation -80.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds