Wall clock time and date at job start Fri Apr 10 2020 18:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99922 * 2 1 4 4 H 1.48496 * 109.47255 * 274.85244 * 3 2 1 5 5 H 1.48503 * 109.47255 * 34.85039 * 3 2 1 6 6 H 1.48503 * 109.47298 * 154.84866 * 3 2 1 7 7 C 1.38809 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00046 * 155.44258 * 7 2 1 9 9 N 1.36942 * 120.00042 * 335.44184 * 7 2 1 10 10 C 1.44346 * 116.42098 * 333.65914 * 9 7 2 11 11 C 1.51880 * 113.47838 * 187.47779 * 10 9 7 12 12 C 1.52911 * 111.49636 * 321.32783 * 11 10 9 13 13 H 1.09000 * 112.47517 * 293.13163 * 12 11 10 14 14 C 1.55420 * 106.56659 * 169.08484 * 12 11 10 15 15 N 1.47377 * 106.73861 * 270.28492 * 14 12 11 16 16 C 1.34778 * 125.74200 * 179.06320 * 15 14 12 17 17 O 1.21282 * 119.99633 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00079 * 180.02562 * 16 15 14 19 19 N 1.46503 * 109.46703 * 179.97438 * 18 16 15 20 20 C 1.46762 * 124.35351 * 269.95075 * 19 18 16 21 21 C 1.54485 * 105.47333 * 197.04182 * 20 19 18 22 22 C 1.54632 * 101.76300 * 334.58299 * 21 20 19 23 23 C 1.34422 * 124.34470 * 89.98108 * 19 18 16 24 24 O 1.21277 * 124.94534 * 359.60182 * 23 19 18 25 25 C 1.47933 * 108.52083 * 359.32645 * 15 14 12 26 26 C 1.54102 * 110.27117 * 59.77919 * 12 11 10 27 27 H 1.08996 * 109.19030 * 187.76323 * 26 12 11 28 28 C 1.43970 * 116.42586 * 153.63581 * 9 7 2 29 29 H 0.97005 * 120.00240 * 359.97438 * 1 2 3 30 30 H 1.08997 * 108.77681 * 308.92670 * 10 9 7 31 31 H 1.08995 * 108.77835 * 67.22118 * 10 9 7 32 32 H 1.08997 * 109.76079 * 200.38981 * 11 10 9 33 33 H 1.09005 * 108.48951 * 81.42309 * 11 10 9 34 34 H 1.09002 * 110.00027 * 150.96463 * 14 12 11 35 35 H 1.09001 * 110.00592 * 29.60715 * 14 12 11 36 36 H 1.09000 * 109.47191 * 60.00162 * 18 16 15 37 37 H 1.08992 * 109.47305 * 299.99756 * 18 16 15 38 38 H 1.09001 * 110.24708 * 78.04195 * 20 19 18 39 39 H 1.09005 * 110.24319 * 316.04085 * 20 19 18 40 40 H 1.09004 * 110.96445 * 216.46457 * 21 20 19 41 41 H 1.08999 * 110.96807 * 92.70153 * 21 20 19 42 42 H 1.08996 * 110.48058 * 143.48192 * 22 21 20 43 43 H 1.09000 * 110.48285 * 265.98699 * 22 21 20 44 44 H 1.09004 * 110.56570 * 93.88013 * 25 15 14 45 45 H 1.08991 * 110.56797 * 216.73728 * 25 15 14 46 46 H 1.08998 * 108.11398 * 61.10137 * 28 9 7 47 47 H 1.08998 * 108.11763 * 304.65005 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3951 2.1056 -1.3950 5 1 1.5026 2.6209 0.8001 6 1 3.5953 1.4128 0.5951 7 6 2.0103 -1.2021 -0.0005 8 1 3.0170 -1.2442 -0.3893 9 7 1.4185 -2.3347 0.4919 10 6 0.3895 -2.1416 1.4856 11 6 -0.0941 -3.4363 2.1153 12 6 -0.1854 -4.5613 1.0836 13 1 -0.9604 -4.3814 0.3385 14 6 -0.4112 -5.8763 1.8807 15 7 0.9233 -6.4212 2.1874 16 6 1.1726 -7.5478 2.8839 17 8 0.2528 -8.2078 3.3190 18 6 2.5943 -7.9868 3.1231 19 7 2.5976 -9.2296 3.8987 20 6 2.6257 -9.2908 5.3648 21 6 3.0551 -10.7343 5.7089 22 6 2.5977 -11.5077 4.4505 23 6 2.5759 -10.4605 3.3590 24 8 2.5440 -10.6971 2.1699 25 6 1.9434 -5.5202 1.6077 26 6 1.1962 -4.8199 0.4520 27 1 1.0868 -5.5234 -0.3732 28 6 1.8907 -3.5869 -0.0389 29 1 -0.4851 0.8401 0.0004 30 1 0.7761 -1.4897 2.2689 31 1 -0.4653 -1.6554 1.0156 32 1 -1.0761 -3.2839 2.5632 33 1 0.6102 -3.7254 2.8954 34 1 -0.9743 -6.5869 1.2757 35 1 -0.9490 -5.6645 2.8049 36 1 3.1255 -7.2122 3.6762 37 1 3.0888 -8.1539 2.1663 38 1 1.6349 -9.0852 5.7700 39 1 3.3503 -8.5777 5.7582 40 1 2.5367 -11.0940 6.5978 41 1 4.1357 -10.8000 5.8359 42 1 3.3096 -12.2967 4.2081 43 1 1.6025 -11.9260 4.6007 44 1 2.2769 -4.7928 2.3479 45 1 2.7878 -6.0935 1.2254 46 1 2.9506 -3.6776 0.1989 47 1 1.7944 -3.5530 -1.1241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087879439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:46 Heat of formation + Delta-G solvation = -31.307401 kcal Electronic energy + Delta-G solvation = -27927.350391 eV Core-core repulsion = 24110.909779 eV Total energy + Delta-G solvation = -3816.440611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.84968 -40.05428 -38.27134 -36.54883 -35.64587 -33.25864 -32.57134 -31.57741 -30.33410 -28.53901 -27.83886 -27.15898 -25.46100 -23.52645 -22.29131 -22.19369 -21.56135 -20.18981 -19.05234 -17.90928 -17.41153 -17.18309 -16.79893 -16.56314 -15.90998 -15.56747 -15.10713 -14.79707 -14.43569 -14.01184 -13.94444 -13.86768 -13.64361 -13.42649 -13.24492 -13.04179 -12.94286 -12.85312 -12.49060 -12.31508 -12.06625 -11.81252 -11.77225 -11.36969 -11.29248 -11.12483 -10.77345 -10.54891 -10.30620 -10.25503 -10.18971 -10.01937 -9.77768 -9.70333 -9.59615 -8.92045 -8.57899 -8.50136 -6.65216 -5.65259 -3.29252 2.31351 2.58315 2.59343 3.16046 3.35487 3.43635 3.46778 4.05753 4.13485 4.37319 4.47191 4.48842 4.70155 4.71815 4.85494 4.92319 5.03292 5.11204 5.14630 5.27160 5.29790 5.33689 5.36838 5.45778 5.49800 5.53737 5.63970 5.64447 5.82939 5.88033 6.02729 6.06139 6.12786 6.20231 6.36100 6.49965 6.54702 6.62543 6.76407 6.83688 6.83855 7.27382 7.52338 7.79161 7.90126 7.93769 8.13962 8.49992 9.26166 9.96097 10.25184 11.21040 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.028605 B = 0.002620 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.630182 B =10683.846837 C =10880.588484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.006 3.994 3 Si 0.898 3.102 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.269 4.269 8 H 0.066 0.934 9 N -0.585 5.585 10 C 0.156 3.844 11 C -0.121 4.121 12 C -0.081 4.081 13 H 0.098 0.902 14 C 0.110 3.890 15 N -0.615 5.615 16 C 0.510 3.490 17 O -0.540 6.540 18 C 0.112 3.888 19 N -0.604 5.604 20 C 0.102 3.898 21 C -0.130 4.130 22 C -0.153 4.153 23 C 0.522 3.478 24 O -0.531 6.531 25 C 0.103 3.897 26 C -0.097 4.097 27 H 0.075 0.925 28 C 0.176 3.824 29 H 0.253 0.747 30 H 0.019 0.981 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.015 0.985 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.349 -17.748 11.580 21.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.194 4.194 3 Si 0.727 3.273 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.398 4.398 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.032 3.968 11 C -0.159 4.159 12 C -0.100 4.100 13 H 0.117 0.883 14 C -0.012 4.012 15 N -0.349 5.349 16 C 0.296 3.704 17 O -0.417 6.417 18 C -0.014 4.014 19 N -0.338 5.338 20 C -0.021 4.021 21 C -0.168 4.168 22 C -0.193 4.193 23 C 0.310 3.690 24 O -0.407 6.407 25 C -0.019 4.019 26 C -0.117 4.117 27 H 0.094 0.906 28 C 0.050 3.950 29 H 0.063 0.937 30 H 0.037 0.963 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.032 0.968 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.720 -18.190 11.232 21.893 hybrid contribution 0.337 1.099 0.027 1.150 sum 5.057 -17.091 11.259 21.081 Atomic orbital electron populations 1.70008 1.05487 1.25359 1.52441 1.24955 0.94971 0.98520 1.00971 0.86358 0.79485 0.83800 0.77625 1.21485 1.21555 1.20447 1.19113 0.96092 0.86485 1.38142 0.91622 1.42672 1.43703 1.00917 1.43703 1.20260 0.94316 0.91835 0.90432 1.21722 1.00430 0.96682 0.97114 1.22064 0.97485 0.92980 0.97442 0.88337 1.22423 0.84031 0.95184 0.99594 1.48751 1.09000 1.23497 1.53699 1.20770 0.91956 0.79646 0.77984 1.90682 1.46405 1.53796 1.50851 1.21176 0.94454 0.86899 0.98848 1.47814 1.73301 1.05263 1.07393 1.22146 1.02407 0.98084 0.79417 1.22588 1.02380 0.93809 0.97991 1.22302 1.04810 0.97950 0.94215 1.20911 0.74569 0.84167 0.89366 1.90732 1.50008 1.83391 1.16542 1.22638 0.91015 0.92219 0.96075 1.21641 0.95358 0.98179 0.96510 0.90640 1.19244 0.95229 0.84453 0.96119 0.93697 0.96273 0.90326 0.92239 0.93568 0.91924 0.91403 0.87209 0.86981 0.90596 0.90162 0.89024 0.89858 0.88030 0.87630 0.90316 0.90688 0.96762 0.95782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 10.87 55.49 0.60 -24.40 16 2 C 0.01 0.15 4.94 -17.43 -0.09 0.06 16 3 Si 0.90 21.17 29.62 -169.99 -5.03 16.14 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.27 -7.14 9.27 -15.06 -0.14 -7.28 16 8 H 0.07 1.72 7.94 -52.49 -0.42 1.31 16 9 N -0.59 -13.90 3.23 -179.52 -0.58 -14.48 16 10 C 0.16 3.56 5.07 -5.76 -0.03 3.53 16 11 C -0.12 -2.14 4.83 -27.35 -0.13 -2.28 16 12 C -0.08 -1.29 3.60 -88.81 -0.32 -1.61 16 13 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 14 C 0.11 1.63 6.25 -2.28 -0.01 1.62 16 15 N -0.61 -8.80 3.34 -169.44 -0.57 -9.36 16 16 C 0.51 7.52 7.92 -10.99 -0.09 7.43 16 17 O -0.54 -9.82 16.76 5.56 0.09 -9.73 16 18 C 0.11 1.25 5.43 -5.19 -0.03 1.22 16 19 N -0.60 -6.66 2.42 -173.78 -0.42 -7.08 16 20 C 0.10 0.75 7.35 -3.12 -0.02 0.73 16 21 C -0.13 -0.66 7.18 -25.09 -0.18 -0.84 16 22 C -0.15 -1.18 6.86 -26.74 -0.18 -1.36 16 23 C 0.52 6.60 8.02 -10.86 -0.09 6.51 16 24 O -0.53 -9.03 17.60 5.56 0.10 -8.93 16 25 C 0.10 1.37 5.48 -2.52 -0.01 1.36 16 26 C -0.10 -1.53 2.85 -90.89 -0.26 -1.79 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 C 0.18 3.44 5.75 -6.98 -0.04 3.40 16 29 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.02 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.08 2.06 5.80 -51.93 -0.30 1.76 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.78 6.68 -51.93 -0.35 0.44 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.02 7.78 -51.93 -0.40 0.61 16 36 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.11 1.24 7.66 -51.93 -0.40 0.84 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.09 7.22 -51.93 -0.37 0.71 16 45 H 0.07 0.83 7.51 -51.93 -0.39 0.44 16 46 H 0.01 0.28 7.81 -51.93 -0.41 -0.13 16 47 H 0.02 0.50 8.13 -51.93 -0.42 0.08 16 LS Contribution 368.46 15.07 5.55 5.55 Total: -1.00 -34.34 368.46 -9.54 -43.89 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -7.66 Total: -2.30 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: -1.62 Total: 10.70 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.96 Total: -55.32 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.19 Total: -18.66 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.34 -9.54 -43.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087879439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.579 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds