Wall clock time and date at job start Fri Apr 10 2020 18:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86808 * 120.00060 * 2 1 4 4 H 1.48497 * 109.47167 * 274.39174 * 3 2 1 5 5 H 1.48505 * 109.46696 * 34.38857 * 3 2 1 6 6 H 1.48491 * 109.47191 * 154.38703 * 3 2 1 7 7 C 1.38805 * 120.00466 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00614 * 162.05744 * 7 2 1 9 9 N 1.36942 * 119.99987 * 342.05983 * 7 2 1 10 10 C 1.47233 * 121.38921 * 332.16240 * 9 7 2 11 11 C 1.51498 * 107.91611 * 237.94956 * 10 9 7 12 12 C 1.53087 * 111.61541 * 302.68139 * 11 10 9 13 13 H 1.09005 * 112.14775 * 287.53218 * 12 11 10 14 14 C 1.55409 * 106.81323 * 163.90697 * 12 11 10 15 15 N 1.47182 * 106.93280 * 268.55152 * 14 12 11 16 16 C 1.34773 * 125.64931 * 178.83430 * 15 14 12 17 17 O 1.21278 * 120.00227 * 359.97438 * 16 15 14 18 18 C 1.50704 * 120.00102 * 179.97438 * 16 15 14 19 19 H 1.09002 * 109.66781 * 299.50668 * 18 16 15 20 20 C 1.53340 * 109.67419 * 178.96900 * 18 16 15 21 21 C 1.52940 * 108.66264 * 172.72388 * 20 18 16 22 22 N 1.45744 * 110.47664 * 50.78201 * 21 20 18 23 23 C 1.33356 * 124.11182 * 340.88776 * 22 21 20 24 24 O 1.21281 * 118.24802 * 182.22698 * 23 22 21 25 25 C 1.50180 * 123.50572 * 2.24673 * 23 22 21 26 26 C 1.47849 * 108.69916 * 358.83902 * 15 14 12 27 27 C 1.53852 * 103.99290 * 336.64636 * 26 15 14 28 28 H 1.09004 * 109.15388 * 283.01383 * 27 26 15 29 29 C 1.46696 * 121.39675 * 152.13787 * 9 7 2 30 30 H 0.97003 * 120.00388 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.81602 * 357.86684 * 10 9 7 32 32 H 1.08999 * 109.81253 * 118.69971 * 10 9 7 33 33 H 1.08999 * 108.89171 * 182.06792 * 11 10 9 34 34 H 1.08994 * 108.78328 * 63.21772 * 11 10 9 35 35 H 1.09000 * 109.96447 * 27.92529 * 14 12 11 36 36 H 1.09001 * 109.96634 * 149.17936 * 14 12 11 37 37 H 1.09003 * 109.60756 * 292.49528 * 20 18 16 38 38 H 1.09003 * 109.60512 * 52.97730 * 20 18 16 39 39 H 1.09004 * 109.31232 * 290.46146 * 21 20 18 40 40 H 1.08997 * 109.12152 * 170.97951 * 21 20 18 41 41 H 0.97003 * 117.94500 * 160.90998 * 22 21 20 42 42 H 1.08995 * 109.40088 * 222.28905 * 25 23 22 43 43 H 1.08999 * 109.39886 * 102.54560 * 25 23 22 44 44 H 1.09003 * 110.52616 * 218.01645 * 26 15 14 45 45 H 1.09001 * 110.52566 * 95.27222 * 26 15 14 46 46 H 1.08999 * 109.12361 * 7.42010 * 29 9 7 47 47 H 1.09001 * 109.12688 * 248.32905 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4048 2.1001 -1.3959 5 1 1.4970 2.6241 0.7908 6 1 3.5909 1.4152 0.6052 7 6 2.0102 -1.2020 -0.0005 8 1 3.0509 -1.2247 -0.2887 9 7 1.3755 -2.3594 0.3642 10 6 0.2375 -2.3482 1.2984 11 6 0.5931 -3.2317 2.4766 12 6 0.9348 -4.6558 2.0307 13 1 0.0516 -5.2100 1.7128 14 6 1.6657 -5.3364 3.2214 15 7 3.1061 -5.1012 3.0311 16 6 4.0854 -5.5113 3.8613 17 8 3.8085 -6.1312 4.8662 18 6 5.5246 -5.1995 3.5409 19 1 5.7943 -5.6517 2.5865 20 6 6.4310 -5.7501 4.6484 21 6 7.8885 -5.5844 4.2156 22 7 8.1397 -4.2151 3.7842 23 6 7.1843 -3.3572 3.4244 24 8 7.5166 -2.2546 3.0437 25 6 5.7189 -3.6830 3.4659 26 6 3.3007 -4.3403 1.7784 27 6 2.0378 -4.6488 0.9558 28 1 2.1255 -5.6470 0.5266 29 6 1.8007 -3.6619 -0.1597 30 1 -0.4851 0.8400 0.0004 31 1 0.0491 -1.3302 1.6391 32 1 -0.6502 -2.7424 0.8038 33 1 -0.2542 -3.2644 3.1615 34 1 1.4523 -2.8017 2.9911 35 1 1.3372 -4.8939 4.1618 36 1 1.4602 -6.4069 3.2215 37 1 6.2582 -5.1967 5.5715 38 1 6.2145 -6.8066 4.8068 39 1 8.0996 -6.2663 3.3918 40 1 8.5399 -5.8226 5.0564 41 1 9.0597 -3.9087 3.7568 42 1 5.2373 -3.3003 2.5661 43 1 5.2690 -3.2165 4.3423 44 1 4.1918 -4.6870 1.2552 45 1 3.3698 -3.2726 1.9866 46 1 2.7232 -3.5351 -0.7263 47 1 1.0268 -4.0505 -0.8217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087932060.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:50 Heat of formation + Delta-G solvation = -50.067771 kcal Electronic energy + Delta-G solvation = -28867.669785 eV Core-core repulsion = 25050.415663 eV Total energy + Delta-G solvation = -3817.254122 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.94813 -39.87303 -38.42994 -36.39331 -35.35333 -33.55439 -32.42147 -31.34377 -30.22855 -29.76555 -27.70706 -26.05323 -25.23869 -23.84256 -22.80709 -21.85792 -21.25385 -19.51678 -19.18708 -18.42787 -17.51308 -17.21357 -16.78270 -16.38668 -15.79775 -15.39575 -15.15387 -14.78474 -14.51259 -14.44113 -13.89134 -13.64236 -13.57780 -13.43399 -13.24239 -13.18324 -12.58305 -12.48400 -12.05583 -11.99517 -11.84195 -11.82017 -11.35176 -11.27665 -11.25352 -11.01084 -10.75361 -10.65795 -10.39753 -10.24956 -10.19649 -9.96915 -9.57608 -9.51043 -9.43861 -9.31940 -8.53803 -8.48251 -6.71908 -5.81844 -3.23985 2.49900 2.60049 2.99872 3.06944 3.38195 3.46430 3.50801 4.17342 4.34949 4.40718 4.48359 4.51430 4.75356 4.82998 4.96115 4.98444 5.04966 5.12706 5.27354 5.37331 5.39064 5.42715 5.54007 5.58145 5.65493 5.67046 5.79775 5.85683 5.87396 5.96564 6.12496 6.17807 6.26300 6.46506 6.50305 6.55619 6.62514 6.66913 6.76400 6.81331 7.10028 7.31242 7.59210 7.63395 7.77233 8.05247 8.15313 8.41014 9.16601 9.80488 10.38930 11.26653 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.012364 B = 0.004600 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.183578 B = 6085.278496 C = 7793.404094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.005 3.995 3 Si 0.897 3.103 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.164 3.836 11 C -0.134 4.134 12 C -0.084 4.084 13 H 0.089 0.911 14 C 0.110 3.890 15 N -0.611 5.611 16 C 0.532 3.468 17 O -0.548 6.548 18 C -0.106 4.106 19 H 0.104 0.896 20 C -0.116 4.116 21 C 0.111 3.889 22 N -0.724 5.724 23 C 0.524 3.476 24 O -0.548 6.548 25 C -0.134 4.134 26 C 0.105 3.895 27 C -0.107 4.107 28 H 0.066 0.934 29 C 0.154 3.846 30 H 0.254 0.746 31 H 0.094 0.906 32 H 0.017 0.983 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.399 0.601 42 H 0.117 0.883 43 H 0.105 0.895 44 H 0.069 0.931 45 H 0.090 0.910 46 H 0.056 0.944 47 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.496 -14.323 7.166 19.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.194 4.194 3 Si 0.726 3.274 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.038 3.962 11 C -0.173 4.173 12 C -0.103 4.103 13 H 0.107 0.893 14 C -0.012 4.012 15 N -0.343 5.343 16 C 0.321 3.679 17 O -0.427 6.427 18 C -0.128 4.128 19 H 0.122 0.878 20 C -0.155 4.155 21 C -0.014 4.014 22 N -0.377 5.377 23 C 0.311 3.689 24 O -0.425 6.425 25 C -0.174 4.174 26 C -0.017 4.017 27 C -0.128 4.128 28 H 0.084 0.916 29 C 0.027 3.973 30 H 0.064 0.936 31 H 0.112 0.888 32 H 0.035 0.965 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.234 0.766 42 H 0.135 0.865 43 H 0.124 0.876 44 H 0.087 0.913 45 H 0.108 0.892 46 H 0.074 0.926 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 10.232 -14.011 7.547 18.920 hybrid contribution 0.676 0.839 -0.044 1.078 sum 10.908 -13.173 7.502 18.676 Atomic orbital electron populations 1.70012 1.05300 1.25528 1.53615 1.24983 0.95196 0.98361 1.00812 0.86364 0.79499 0.83818 0.77671 1.21453 1.21577 1.20173 1.19116 0.92833 0.84660 1.41404 0.91566 1.44030 1.36496 1.00839 1.49649 1.20586 0.88638 0.99419 0.87571 1.21957 1.00496 0.94357 1.00464 1.22158 0.97210 0.97518 0.93385 0.89303 1.22360 0.79691 0.99758 0.99411 1.48676 1.06819 1.54757 1.24089 1.19981 0.86398 0.79032 0.82538 1.90683 1.83888 1.41483 1.26598 1.21385 0.92933 0.96731 1.01706 0.87821 1.21728 0.91973 1.03726 0.98027 1.21427 0.97279 0.82633 1.00014 1.45505 1.10193 1.13608 1.68388 1.20030 0.88476 0.84234 0.76146 1.90809 1.82783 1.22213 1.46727 1.21816 0.93290 0.95078 1.07180 1.22474 0.98473 0.97386 0.83348 1.21971 0.93678 1.00322 0.96843 0.91575 1.20174 0.98334 0.86795 0.92018 0.93642 0.88832 0.96530 0.93269 0.92478 0.91471 0.92199 0.90187 0.88697 0.91389 0.90120 0.76567 0.86531 0.87637 0.91272 0.89167 0.92590 0.95995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.34 11.19 55.49 0.62 -24.72 16 2 C 0.01 0.14 4.95 -17.44 -0.09 0.06 16 3 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.51 9.64 -15.06 -0.15 -6.65 16 8 H 0.07 1.70 7.89 -52.49 -0.41 1.28 16 9 N -0.59 -13.50 2.90 -174.69 -0.51 -14.01 16 10 C 0.16 3.62 5.44 -4.40 -0.02 3.60 16 11 C -0.13 -2.35 4.74 -27.45 -0.13 -2.48 16 12 C -0.08 -1.24 3.59 -88.77 -0.32 -1.56 16 13 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 14 C 0.11 1.55 6.20 -2.39 -0.01 1.53 16 15 N -0.61 -8.49 3.33 -170.02 -0.57 -9.06 16 16 C 0.53 7.27 7.20 -10.98 -0.08 7.19 16 17 O -0.55 -9.01 16.22 5.56 0.09 -8.92 16 18 C -0.11 -1.10 1.95 -91.56 -0.18 -1.28 16 19 H 0.10 0.93 7.88 -51.93 -0.41 0.52 16 20 C -0.12 -0.98 4.71 -26.59 -0.13 -1.11 16 21 C 0.11 0.69 7.17 -4.48 -0.03 0.66 16 22 N -0.72 -6.49 5.45 -61.38 -0.33 -6.82 16 23 C 0.52 6.71 7.71 -11.87 -0.09 6.62 16 24 O -0.55 -9.58 17.78 5.56 0.10 -9.48 16 25 C -0.13 -1.60 4.97 -28.10 -0.14 -1.74 16 26 C 0.11 1.48 4.11 -2.86 -0.01 1.47 16 27 C -0.11 -1.60 2.81 -90.74 -0.26 -1.86 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 C 0.15 2.87 5.92 -5.03 -0.03 2.84 16 30 H 0.25 6.95 8.31 -40.82 -0.34 6.62 16 31 H 0.09 2.39 5.92 -51.93 -0.31 2.08 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.07 7.15 -51.93 -0.37 0.70 16 35 H 0.07 0.99 7.76 -51.93 -0.40 0.58 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 38 H 0.09 0.78 7.89 -51.93 -0.41 0.37 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.40 3.12 8.80 -40.82 -0.36 2.76 16 42 H 0.12 1.53 5.47 -51.93 -0.28 1.24 16 43 H 0.11 1.31 8.09 -51.93 -0.42 0.89 16 44 H 0.07 0.84 7.37 -51.93 -0.38 0.46 16 45 H 0.09 1.51 6.72 -51.93 -0.35 1.16 16 46 H 0.06 1.02 7.93 -51.93 -0.41 0.61 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 359.36 15.07 5.42 5.42 Total: -1.00 -32.44 359.36 -9.33 -41.78 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.46 Total: 2.10 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -1.66 Total: 7.29 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.79 Total: -54.61 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.19 Total: -18.40 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.44 -9.33 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087932060.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.292 kcal (2) G-P(sol) polarization free energy of solvation -32.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds