Wall clock time and date at job start Fri Apr 10 2020 18:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86808 * 120.00060 * 2 1 4 4 H 1.48497 * 109.47167 * 274.39174 * 3 2 1 5 5 H 1.48505 * 109.46696 * 34.38857 * 3 2 1 6 6 H 1.48491 * 109.47191 * 154.38703 * 3 2 1 7 7 C 1.38805 * 120.00466 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00614 * 162.05744 * 7 2 1 9 9 N 1.36942 * 119.99987 * 342.05983 * 7 2 1 10 10 C 1.47233 * 121.38921 * 332.16240 * 9 7 2 11 11 C 1.51498 * 107.91611 * 237.94956 * 10 9 7 12 12 C 1.53087 * 111.61541 * 302.68139 * 11 10 9 13 13 H 1.09005 * 112.14775 * 287.53218 * 12 11 10 14 14 C 1.55409 * 106.81323 * 163.90697 * 12 11 10 15 15 N 1.47182 * 106.93280 * 268.55152 * 14 12 11 16 16 C 1.34773 * 125.64931 * 178.83430 * 15 14 12 17 17 O 1.21278 * 120.00227 * 359.97438 * 16 15 14 18 18 C 1.50704 * 120.00102 * 179.97438 * 16 15 14 19 19 H 1.09002 * 109.66781 * 299.50668 * 18 16 15 20 20 C 1.53340 * 109.67419 * 178.96900 * 18 16 15 21 21 C 1.52940 * 108.66264 * 172.72388 * 20 18 16 22 22 N 1.45744 * 110.47664 * 50.78201 * 21 20 18 23 23 C 1.33356 * 124.11182 * 340.88776 * 22 21 20 24 24 O 1.21281 * 118.24802 * 182.22698 * 23 22 21 25 25 C 1.50180 * 123.50572 * 2.24673 * 23 22 21 26 26 C 1.47849 * 108.69916 * 358.83902 * 15 14 12 27 27 C 1.53852 * 103.99290 * 336.64636 * 26 15 14 28 28 H 1.09004 * 109.15388 * 283.01383 * 27 26 15 29 29 C 1.46696 * 121.39675 * 152.13787 * 9 7 2 30 30 H 0.97003 * 120.00388 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.81602 * 357.86684 * 10 9 7 32 32 H 1.08999 * 109.81253 * 118.69971 * 10 9 7 33 33 H 1.08999 * 108.89171 * 182.06792 * 11 10 9 34 34 H 1.08994 * 108.78328 * 63.21772 * 11 10 9 35 35 H 1.09000 * 109.96447 * 27.92529 * 14 12 11 36 36 H 1.09001 * 109.96634 * 149.17936 * 14 12 11 37 37 H 1.09003 * 109.60756 * 292.49528 * 20 18 16 38 38 H 1.09003 * 109.60512 * 52.97730 * 20 18 16 39 39 H 1.09004 * 109.31232 * 290.46146 * 21 20 18 40 40 H 1.08997 * 109.12152 * 170.97951 * 21 20 18 41 41 H 0.97003 * 117.94500 * 160.90998 * 22 21 20 42 42 H 1.08995 * 109.40088 * 222.28905 * 25 23 22 43 43 H 1.08999 * 109.39886 * 102.54560 * 25 23 22 44 44 H 1.09003 * 110.52616 * 218.01645 * 26 15 14 45 45 H 1.09001 * 110.52566 * 95.27222 * 26 15 14 46 46 H 1.08999 * 109.12361 * 7.42010 * 29 9 7 47 47 H 1.09001 * 109.12688 * 248.32905 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4048 2.1001 -1.3959 5 1 1.4970 2.6241 0.7908 6 1 3.5909 1.4152 0.6052 7 6 2.0102 -1.2020 -0.0005 8 1 3.0509 -1.2247 -0.2887 9 7 1.3755 -2.3594 0.3642 10 6 0.2375 -2.3482 1.2984 11 6 0.5931 -3.2317 2.4766 12 6 0.9348 -4.6558 2.0307 13 1 0.0516 -5.2100 1.7128 14 6 1.6657 -5.3364 3.2214 15 7 3.1061 -5.1012 3.0311 16 6 4.0854 -5.5113 3.8613 17 8 3.8085 -6.1312 4.8662 18 6 5.5246 -5.1995 3.5409 19 1 5.7943 -5.6517 2.5865 20 6 6.4310 -5.7501 4.6484 21 6 7.8885 -5.5844 4.2156 22 7 8.1397 -4.2151 3.7842 23 6 7.1843 -3.3572 3.4244 24 8 7.5166 -2.2546 3.0437 25 6 5.7189 -3.6830 3.4659 26 6 3.3007 -4.3403 1.7784 27 6 2.0378 -4.6488 0.9558 28 1 2.1255 -5.6470 0.5266 29 6 1.8007 -3.6619 -0.1597 30 1 -0.4851 0.8400 0.0004 31 1 0.0491 -1.3302 1.6391 32 1 -0.6502 -2.7424 0.8038 33 1 -0.2542 -3.2644 3.1615 34 1 1.4523 -2.8017 2.9911 35 1 1.3372 -4.8939 4.1618 36 1 1.4602 -6.4069 3.2215 37 1 6.2582 -5.1967 5.5715 38 1 6.2145 -6.8066 4.8068 39 1 8.0996 -6.2663 3.3918 40 1 8.5399 -5.8226 5.0564 41 1 9.0597 -3.9087 3.7568 42 1 5.2373 -3.3003 2.5661 43 1 5.2690 -3.2165 4.3423 44 1 4.1918 -4.6870 1.2552 45 1 3.3698 -3.2726 1.9866 46 1 2.7232 -3.5351 -0.7263 47 1 1.0268 -4.0505 -0.8217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087932060.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:49 Heat of formation + Delta-G solvation = -72.463051 kcal Electronic energy + Delta-G solvation = -28868.640917 eV Core-core repulsion = 25050.415663 eV Total energy + Delta-G solvation = -3818.225254 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.97519 -40.97942 -39.66957 -37.36625 -36.89021 -34.61549 -33.92393 -32.80761 -31.74011 -30.67427 -29.10711 -27.38601 -26.51182 -24.99748 -23.95534 -23.34581 -22.64804 -20.43805 -20.17078 -19.87018 -18.74750 -18.41298 -18.01673 -17.31795 -17.09689 -16.69629 -16.46384 -16.05323 -15.76291 -15.43033 -15.19473 -15.10201 -14.84657 -14.65055 -14.48725 -14.44411 -13.94054 -13.69270 -13.45422 -13.24600 -12.92568 -12.88106 -12.82726 -12.71118 -12.41622 -12.32798 -12.13817 -12.09692 -11.99381 -11.83690 -11.66543 -11.37949 -11.02784 -10.99657 -10.65282 -10.50335 -10.08898 -9.66636 -8.63343 -7.85210 -5.27305 1.44798 1.48542 1.49061 1.54985 1.57536 1.94674 2.28448 2.52279 3.21297 3.31380 3.52399 3.58008 3.62442 3.71635 3.72736 3.76268 3.93773 4.10017 4.20179 4.27202 4.37459 4.44737 4.56179 4.59707 4.60240 4.67851 4.73075 4.75917 4.81849 4.87520 4.99065 5.00952 5.04981 5.12946 5.16172 5.20839 5.25792 5.34408 5.37509 5.59293 5.69438 5.81962 5.82549 6.25688 6.42971 6.49445 7.06970 7.15293 7.17994 7.89746 8.43403 9.21205 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.012364 B = 0.004600 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.183578 B = 6085.278496 C = 7793.404094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.046 4.046 3 Si 0.951 3.049 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.248 4.248 8 H 0.067 0.933 9 N -0.603 5.603 10 C 0.170 3.830 11 C -0.120 4.120 12 C -0.078 4.078 13 H 0.107 0.893 14 C 0.115 3.885 15 N -0.611 5.611 16 C 0.532 3.468 17 O -0.575 6.575 18 C -0.097 4.097 19 H 0.127 0.873 20 C -0.114 4.114 21 C 0.111 3.889 22 N -0.708 5.708 23 C 0.524 3.476 24 O -0.605 6.605 25 C -0.129 4.129 26 C 0.113 3.887 27 C -0.102 4.102 28 H 0.099 0.901 29 C 0.153 3.847 30 H 0.248 0.752 31 H 0.054 0.946 32 H 0.002 0.998 33 H 0.062 0.938 34 H 0.040 0.960 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.407 0.593 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.402 -17.256 7.492 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.241 4.241 3 Si 0.780 3.220 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.201 1.201 7 C -0.378 4.378 8 H 0.085 0.915 9 N -0.327 5.327 10 C 0.044 3.956 11 C -0.159 4.159 12 C -0.096 4.096 13 H 0.125 0.875 14 C -0.008 4.008 15 N -0.344 5.344 16 C 0.321 3.679 17 O -0.455 6.455 18 C -0.118 4.118 19 H 0.145 0.855 20 C -0.152 4.152 21 C -0.011 4.011 22 N -0.359 5.359 23 C 0.311 3.689 24 O -0.487 6.487 25 C -0.169 4.169 26 C -0.009 4.009 27 C -0.122 4.122 28 H 0.117 0.883 29 C 0.027 3.973 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.020 0.980 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.129 0.871 41 H 0.244 0.756 42 H 0.121 0.879 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 12.175 -17.016 7.885 22.359 hybrid contribution 0.087 1.674 -0.120 1.681 sum 12.262 -15.342 7.766 21.119 Atomic orbital electron populations 1.70141 1.06413 1.25513 1.55723 1.25573 0.95791 1.00866 1.01920 0.85508 0.78265 0.80841 0.77365 1.21271 1.22185 1.20081 1.19400 0.92990 0.85916 1.39519 0.91521 1.44226 1.36402 1.01786 1.50264 1.20375 0.88212 0.98136 0.88880 1.21743 1.00291 0.95417 0.98456 1.22125 0.98109 0.95566 0.93841 0.87453 1.22277 0.79738 1.00439 0.98333 1.48724 1.06959 1.54554 1.24123 1.20497 0.87389 0.78180 0.81793 1.90674 1.84476 1.42806 1.27593 1.21411 0.91192 0.95462 1.03723 0.85473 1.21745 0.92872 1.03882 0.96717 1.21692 0.96265 0.81059 1.02120 1.45483 1.09907 1.14227 1.66312 1.20086 0.89103 0.83883 0.75787 1.90785 1.83533 1.24651 1.49733 1.21690 0.92892 0.96307 1.06022 1.22324 0.99210 0.95852 0.83495 1.21852 0.94027 1.00550 0.95813 0.88294 1.20308 0.98163 0.85400 0.93442 0.94303 0.92765 0.97972 0.91894 0.94073 0.92392 0.90520 0.91461 0.87741 0.88778 0.87123 0.75622 0.87896 0.88762 0.88665 0.92212 0.92257 0.96183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.31 11.19 21.65 0.24 -54.07 16 2 C -0.05 -2.54 4.95 84.86 0.42 -2.12 16 3 Si 0.95 45.36 29.59 68.60 2.03 47.38 16 4 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 7 C -0.25 -13.09 9.64 84.03 0.81 -12.28 16 8 H 0.07 3.45 7.89 -2.91 -0.02 3.43 16 9 N -0.60 -28.07 2.90 -706.61 -2.05 -30.12 16 10 C 0.17 7.72 5.44 85.75 0.47 8.18 16 11 C -0.12 -4.21 4.74 30.13 0.14 -4.07 16 12 C -0.08 -2.14 3.59 -9.59 -0.03 -2.18 16 13 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 14 C 0.11 2.95 6.20 87.08 0.54 3.49 16 15 N -0.61 -15.67 3.33 -810.21 -2.70 -18.37 16 16 C 0.53 13.34 7.20 87.66 0.63 13.97 16 17 O -0.58 -17.74 16.22 -3.02 -0.05 -17.79 16 18 C -0.10 -1.76 1.95 -11.40 -0.02 -1.78 16 19 H 0.13 1.76 7.88 -2.39 -0.02 1.74 16 20 C -0.11 -1.57 4.71 30.69 0.14 -1.42 16 21 C 0.11 0.93 7.17 86.50 0.62 1.55 16 22 N -0.71 -10.84 5.45 -467.29 -2.55 -13.38 16 23 C 0.52 12.92 7.71 87.71 0.68 13.60 16 24 O -0.60 -21.36 17.78 -3.03 -0.05 -21.41 16 25 C -0.13 -2.99 4.97 29.71 0.15 -2.84 16 26 C 0.11 2.98 4.11 86.41 0.36 3.33 16 27 C -0.10 -2.80 2.81 -10.87 -0.03 -2.83 16 28 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 29 C 0.15 5.52 5.92 85.63 0.51 6.03 16 30 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 31 H 0.05 2.90 5.92 -2.39 -0.01 2.89 16 32 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.04 1.57 7.15 -2.39 -0.02 1.55 16 35 H 0.06 1.61 7.76 -2.39 -0.02 1.60 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.76 16 37 H 0.07 1.12 8.12 -2.39 -0.02 1.10 16 38 H 0.10 1.32 7.89 -2.39 -0.02 1.30 16 39 H 0.09 0.44 8.14 -2.38 -0.02 0.42 16 40 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.41 5.33 8.80 -92.71 -0.82 4.51 16 42 H 0.10 2.68 5.47 -2.39 -0.01 2.67 16 43 H 0.09 2.37 8.09 -2.39 -0.02 2.35 16 44 H 0.10 2.01 7.37 -2.39 -0.02 2.00 16 45 H 0.06 1.98 6.72 -2.39 -0.02 1.97 16 46 H 0.06 2.08 7.93 -2.39 -0.02 2.06 16 47 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -73.38 359.36 0.41 -72.96 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.16 Total: 14.16 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: 5.37 Total: 20.64 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -7.05 Total: -115.94 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.10 Total: -39.20 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -73.38 0.41 -72.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087932060.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.499 kcal (2) G-P(sol) polarization free energy of solvation -73.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds