Wall clock time and date at job start Fri Apr 10 2020 18:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00096 * 2 1 4 4 H 1.48500 * 109.47371 * 240.00291 * 3 2 1 5 5 H 1.48497 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47114 * 120.00399 * 3 2 1 7 7 C 1.38817 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00166 * 195.79314 * 7 2 1 9 9 N 1.36932 * 120.00215 * 15.50970 * 7 2 1 10 10 C 1.47229 * 121.39436 * 206.96754 * 9 7 2 11 11 C 1.52743 * 107.70779 * 238.33575 * 10 9 7 12 12 C 1.53086 * 110.93862 * 302.05103 * 11 10 9 13 13 H 1.09004 * 112.14276 * 288.28918 * 12 11 10 14 14 C 1.55407 * 106.23742 * 164.37135 * 12 11 10 15 15 N 1.47183 * 106.93477 * 268.76702 * 14 12 11 16 16 C 1.34780 * 125.65488 * 178.86010 * 15 14 12 17 17 O 1.21276 * 119.99915 * 185.08168 * 16 15 14 18 18 C 1.50699 * 119.99445 * 5.07908 * 16 15 14 19 19 H 1.09000 * 109.40416 * 37.34683 * 18 16 15 20 20 C 1.53072 * 109.39792 * 157.16838 * 18 16 15 21 21 C 1.53346 * 108.42708 * 169.02686 * 20 18 16 22 22 C 1.52919 * 108.67432 * 292.47591 * 21 20 18 23 23 N 1.45748 * 110.49378 * 50.74560 * 22 21 20 24 24 C 1.33238 * 124.06864 * 340.85619 * 23 22 21 25 25 O 1.21277 * 118.15751 * 182.29297 * 24 23 22 26 26 C 1.47853 * 108.69881 * 358.83502 * 15 14 12 27 27 C 1.53859 * 103.98751 * 336.65085 * 26 15 14 28 28 H 1.08995 * 109.15913 * 283.00523 * 27 26 15 29 29 C 1.46706 * 121.38852 * 26.69062 * 9 7 2 30 30 H 0.96993 * 120.00053 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.81475 * 357.88824 * 10 9 7 32 32 H 1.09000 * 109.80981 * 118.73190 * 10 9 7 33 33 H 1.09009 * 109.18253 * 62.42315 * 11 10 9 34 34 H 1.08999 * 109.18805 * 181.66829 * 11 10 9 35 35 H 1.09008 * 109.96760 * 28.13345 * 14 12 11 36 36 H 1.08995 * 109.97330 * 149.39070 * 14 12 11 37 37 H 1.08998 * 109.67307 * 288.76369 * 20 18 16 38 38 H 1.09001 * 109.67534 * 49.29328 * 20 18 16 39 39 H 1.09008 * 109.59966 * 52.22405 * 21 20 18 40 40 H 1.08998 * 109.60588 * 172.55111 * 21 20 18 41 41 H 1.09000 * 109.29972 * 171.06766 * 22 21 20 42 42 H 1.09009 * 109.29741 * 290.43422 * 22 21 20 43 43 H 0.96998 * 117.94868 * 160.92614 * 23 22 21 44 44 H 1.08995 * 110.52775 * 218.02681 * 26 15 14 45 45 H 1.09004 * 110.64107 * 95.33324 * 26 15 14 46 46 H 1.09004 * 109.12299 * 248.30258 * 29 9 7 47 47 H 1.08996 * 109.12842 * 7.39008 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0597 -1.2200 0.2540 9 7 1.3631 -2.3663 -0.3182 10 6 1.8210 -3.6651 0.2026 11 6 2.1307 -4.5624 -0.9941 12 6 0.8995 -4.7247 -1.8893 13 1 0.1355 -5.3502 -1.4277 14 6 1.4163 -5.2940 -3.2398 15 7 1.7096 -4.1414 -4.1069 16 6 2.2008 -4.2061 -5.3603 17 8 2.4914 -3.1875 -5.9510 18 6 2.3887 -5.5440 -6.0278 19 1 1.5695 -6.2065 -5.7481 20 6 2.3958 -5.3578 -7.5471 21 6 2.8591 -6.6687 -8.1940 22 6 4.3297 -6.8956 -7.8415 23 7 4.5360 -6.7656 -6.4045 24 6 3.6908 -6.1453 -5.5823 25 8 3.9894 -6.0633 -4.4097 26 6 1.3756 -2.9008 -3.3752 27 6 0.3476 -3.3542 -2.3241 28 1 -0.6194 -3.4947 -2.8069 29 6 0.1808 -2.3708 -1.1867 30 1 -0.4850 0.8400 0.0004 31 1 2.7201 -3.5263 0.8027 32 1 1.0370 -4.1165 0.8107 33 1 2.9397 -4.1187 -1.5746 34 1 2.4444 -5.5426 -0.6352 35 1 2.3230 -5.8766 -3.0757 36 1 0.6499 -5.9190 -3.6981 37 1 1.3909 -5.1136 -7.8915 38 1 3.0815 -4.5539 -7.8151 39 1 2.2600 -7.4960 -7.8134 40 1 2.7459 -6.6025 -9.2760 41 1 4.6262 -7.8953 -8.1591 42 1 4.9426 -6.1592 -8.3615 43 1 5.3390 -7.1540 -6.0235 44 1 0.9345 -2.1665 -4.0492 45 1 2.2616 -2.4899 -2.8909 46 1 -0.6940 -2.6463 -0.5977 47 1 0.0343 -1.3712 -1.5957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088002328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:10 Heat of formation + Delta-G solvation = -46.601677 kcal Electronic energy + Delta-G solvation = -28885.380456 eV Core-core repulsion = 25068.276635 eV Total energy + Delta-G solvation = -3817.103821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.07513 -39.57758 -38.02784 -36.71410 -35.18422 -33.34228 -32.51726 -30.94683 -30.37115 -29.93745 -27.27256 -26.13453 -24.72281 -23.45235 -23.03514 -21.69722 -21.24520 -20.03469 -18.71911 -18.31829 -17.66113 -17.18126 -16.77564 -16.39209 -15.63902 -15.36964 -14.92600 -14.59912 -14.39681 -14.36112 -13.92985 -13.64277 -13.54616 -13.40080 -13.22819 -12.76625 -12.47780 -12.21394 -12.16513 -11.89757 -11.78333 -11.65599 -11.55865 -11.28939 -10.94431 -10.90761 -10.62386 -10.52257 -10.40475 -10.17124 -9.98034 -9.82310 -9.61834 -9.38113 -9.37397 -9.32535 -8.46234 -8.18867 -6.62692 -5.73860 -3.15419 2.27683 2.63339 3.12883 3.29587 3.43887 3.49073 3.52052 4.26202 4.29375 4.35652 4.40564 4.54914 4.75456 4.93332 4.95629 4.99478 5.17924 5.28649 5.32424 5.37027 5.44533 5.46585 5.51312 5.60870 5.74689 5.90830 5.93879 5.98632 6.00850 6.24845 6.32435 6.41217 6.48400 6.51589 6.56700 6.68312 6.78867 6.86954 6.91759 6.98612 7.08934 7.34294 7.68279 7.83756 7.84632 7.96037 8.33537 8.48607 9.26201 9.89018 10.48026 11.34685 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.020295 B = 0.003538 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.333387 B = 7912.280899 C = 8309.295647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.246 4.246 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.127 4.127 12 C -0.084 4.084 13 H 0.087 0.913 14 C 0.094 3.906 15 N -0.599 5.599 16 C 0.543 3.457 17 O -0.543 6.543 18 C -0.122 4.122 19 H 0.121 0.879 20 C -0.110 4.110 21 C -0.136 4.136 22 C 0.108 3.892 23 N -0.718 5.718 24 C 0.531 3.469 25 O -0.533 6.533 26 C 0.122 3.878 27 C -0.113 4.113 28 H 0.062 0.938 29 C 0.177 3.823 30 H 0.254 0.746 31 H 0.054 0.946 32 H 0.020 0.980 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.089 0.911 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.402 0.598 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.023 0.977 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.159 -17.964 -16.063 24.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.375 4.375 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.016 3.984 11 C -0.166 4.166 12 C -0.103 4.103 13 H 0.105 0.895 14 C -0.029 4.029 15 N -0.330 5.330 16 C 0.329 3.671 17 O -0.421 6.421 18 C -0.146 4.146 19 H 0.139 0.861 20 C -0.148 4.148 21 C -0.174 4.174 22 C -0.017 4.017 23 N -0.371 5.371 24 C 0.317 3.683 25 O -0.410 6.410 26 C 0.001 3.999 27 C -0.134 4.134 28 H 0.080 0.920 29 C 0.051 3.949 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.238 0.762 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.041 0.959 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.190 -17.099 -15.903 23.568 hybrid contribution 0.647 0.512 0.001 0.825 sum 3.836 -16.588 -15.903 23.297 Atomic orbital electron populations 1.69982 1.05176 1.25533 1.54377 1.25003 0.95316 0.98265 1.01046 0.86379 0.78925 0.83398 0.78168 1.20972 1.21640 1.20953 1.19123 0.92135 0.84422 1.41862 0.91673 1.44004 1.32694 1.01547 1.52919 1.20902 0.97447 0.87192 0.92879 1.22017 0.96780 0.99218 0.98574 1.22120 0.97890 0.96715 0.93590 0.89462 1.22654 1.00644 0.88519 0.91084 1.48545 1.62011 1.09644 1.12847 1.19259 0.77654 0.89504 0.80689 1.90697 1.51027 1.36189 1.64196 1.21392 0.97575 0.97313 0.98333 0.86092 1.21580 1.04080 0.98260 0.90887 1.21904 0.95150 0.98207 1.02149 1.21427 0.97514 1.02152 0.80570 1.45352 1.25156 1.57947 1.08641 1.19507 0.85213 0.77756 0.85862 1.90799 1.75157 1.58005 1.17043 1.22199 0.99517 0.85558 0.92670 1.22281 0.96762 0.96419 0.97970 0.92000 1.20199 0.88642 0.97945 0.88137 0.93618 0.92752 0.96159 0.91911 0.93237 0.89340 0.92974 0.90017 0.89381 0.90813 0.89180 0.90350 0.91370 0.76187 0.91274 0.89938 0.95884 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.25 11.06 55.49 0.61 -25.64 16 2 C 0.00 0.05 4.99 -17.43 -0.09 -0.04 16 3 Si 0.90 22.23 29.58 -169.99 -5.03 17.21 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.25 -6.81 9.68 -15.06 -0.15 -6.95 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 9 N -0.59 -14.71 2.90 -173.68 -0.50 -15.21 16 10 C 0.14 3.00 6.52 -3.78 -0.02 2.98 16 11 C -0.13 -2.31 4.79 -26.82 -0.13 -2.43 16 12 C -0.08 -1.40 3.61 -88.77 -0.32 -1.72 16 13 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 14 C 0.09 1.43 5.31 -2.39 -0.01 1.42 16 15 N -0.60 -10.51 3.31 -170.01 -0.56 -11.07 16 16 C 0.54 9.28 6.58 -10.98 -0.07 9.21 16 17 O -0.54 -11.04 16.15 5.56 0.09 -10.95 16 18 C -0.12 -1.47 2.22 -93.14 -0.21 -1.68 16 19 H 0.12 1.21 7.44 -51.93 -0.39 0.82 16 20 C -0.11 -1.02 5.04 -26.52 -0.13 -1.15 16 21 C -0.14 -0.75 6.02 -26.59 -0.16 -0.91 16 22 C 0.11 0.60 7.17 -4.49 -0.03 0.56 16 23 N -0.72 -6.37 5.44 -61.42 -0.33 -6.70 16 24 C 0.53 6.79 7.27 -11.92 -0.09 6.71 16 25 O -0.53 -8.88 14.67 5.56 0.08 -8.80 16 26 C 0.12 2.44 5.87 -2.85 -0.02 2.42 16 27 C -0.11 -2.16 2.81 -90.52 -0.25 -2.41 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 C 0.18 4.16 4.77 -4.80 -0.02 4.14 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.05 1.14 7.96 -51.93 -0.41 0.73 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 1.29 7.08 -51.92 -0.37 0.93 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.42 5.49 -51.92 -0.28 1.14 16 36 H 0.05 0.66 7.82 -51.93 -0.41 0.25 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.98 7.46 -51.93 -0.39 0.59 16 39 H 0.07 0.36 8.12 -51.92 -0.42 -0.06 16 40 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 43 H 0.40 3.13 8.80 -40.82 -0.36 2.77 16 44 H 0.07 1.41 8.11 -51.93 -0.42 0.99 16 45 H 0.08 1.91 7.52 -51.93 -0.39 1.52 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.09 2.48 5.97 -51.93 -0.31 2.17 16 LS Contribution 358.34 15.07 5.40 5.40 Total: -1.00 -34.04 358.34 -9.45 -43.49 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.50 Total: 2.15 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -1.70 Total: 10.13 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -0.79 Total: -58.62 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.17 Total: -19.75 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.04 -9.45 -43.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088002328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.116 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds