Wall clock time and date at job start Fri Apr 10 2020 18:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86793 * 119.99964 * 2 1 4 4 H 1.48505 * 109.46972 * 270.00098 * 3 2 1 5 5 H 1.48506 * 109.47463 * 30.00125 * 3 2 1 6 6 H 1.48505 * 109.47250 * 150.00227 * 3 2 1 7 7 C 1.38810 * 119.99580 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99700 * 154.51675 * 7 2 1 9 9 N 1.36932 * 120.00556 * 334.51541 * 7 2 1 10 10 C 1.44352 * 116.42350 * 335.30139 * 9 7 2 11 11 C 1.52256 * 113.12489 * 188.07429 * 10 9 7 12 12 C 1.52903 * 111.51163 * 320.10675 * 11 10 9 13 13 H 1.08999 * 113.04146 * 294.11070 * 12 11 10 14 14 C 1.55415 * 106.56993 * 169.69342 * 12 11 10 15 15 N 1.47382 * 106.74025 * 270.99344 * 14 12 11 16 16 C 1.34769 * 125.74391 * 179.02861 * 15 14 12 17 17 O 1.21283 * 120.00203 * 175.72247 * 16 15 14 18 18 C 1.50698 * 119.99866 * 355.73005 * 16 15 14 19 19 H 1.09001 * 109.60583 * 45.84932 * 18 16 15 20 20 C 1.53348 * 109.60555 * 166.17692 * 18 16 15 21 21 C 1.53028 * 108.44025 * 187.14400 * 20 18 16 22 22 C 1.50180 * 110.00070 * 311.33490 * 21 20 18 23 23 O 1.21281 * 118.24754 * 197.44559 * 22 21 20 24 24 N 1.33354 * 123.50827 * 17.47323 * 22 21 20 25 25 C 1.45754 * 124.10348 * 357.79628 * 24 22 21 26 26 C 1.47938 * 108.51679 * 359.06990 * 15 14 12 27 27 C 1.54149 * 103.90164 * 335.48736 * 26 15 14 28 28 H 1.08994 * 109.18196 * 284.78850 * 27 26 15 29 29 C 1.43978 * 116.42738 * 155.27597 * 9 7 2 30 30 H 0.96998 * 119.99951 * 359.97438 * 1 2 3 31 31 H 1.08994 * 108.77394 * 308.92761 * 10 9 7 32 32 H 1.09003 * 108.77507 * 67.21895 * 10 9 7 33 33 H 1.09000 * 109.27028 * 199.49007 * 11 10 9 34 34 H 1.09008 * 108.97265 * 80.52309 * 11 10 9 35 35 H 1.09000 * 110.00408 * 151.67796 * 14 12 11 36 36 H 1.08997 * 110.03993 * 30.33534 * 14 12 11 37 37 H 1.09005 * 109.67156 * 307.01755 * 20 18 16 38 38 H 1.08996 * 109.67380 * 67.55166 * 20 18 16 39 39 H 1.09000 * 109.43843 * 191.12008 * 21 20 18 40 40 H 1.09004 * 109.18824 * 71.39532 * 21 20 18 41 41 H 0.96997 * 117.95044 * 177.77443 * 24 22 21 42 42 H 1.09000 * 109.29908 * 258.74103 * 25 24 22 43 43 H 1.09003 * 109.30122 * 139.37213 * 25 24 22 44 44 H 1.09005 * 110.56790 * 94.13101 * 26 15 14 45 45 H 1.08998 * 110.57013 * 216.84156 * 26 15 14 46 46 H 1.08999 * 108.11354 * 61.10316 * 29 9 7 47 47 H 1.08994 * 108.11590 * 304.65100 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0115 -1.2475 -0.4030 9 7 1.4255 -2.3306 0.5092 10 6 0.3849 -2.1283 1.4889 11 6 -0.0763 -3.4215 2.1471 12 6 -0.1637 -4.5651 1.1358 13 1 -0.9349 -4.4094 0.3814 14 6 -0.3797 -5.8670 1.9567 15 7 0.9590 -6.3894 2.2841 16 6 1.2166 -7.4987 3.0048 17 8 2.3599 -7.8776 3.1470 18 6 0.0840 -8.2685 3.6338 19 1 -0.7190 -8.3962 2.9078 20 6 0.5875 -9.6428 4.0912 21 6 -0.6138 -10.4671 4.5596 22 6 -1.4566 -9.6568 5.5022 23 8 -2.2505 -10.2409 6.2090 24 7 -1.3792 -8.3293 5.6032 25 6 -0.4413 -7.5058 4.8507 26 6 1.9724 -5.4906 1.6893 27 6 1.2294 -4.8184 0.5179 28 1 1.1337 -5.5308 -0.3014 29 6 1.9159 -3.5884 0.0086 30 1 -0.4850 0.8400 0.0004 31 1 0.7571 -1.4566 2.2624 32 1 -0.4703 -1.6608 1.0009 33 1 -1.0579 -3.2670 2.5949 34 1 0.6318 -3.6927 2.9302 35 1 -0.9292 -6.5963 1.3614 36 1 -0.9275 -5.6447 2.8724 37 1 1.0804 -10.1481 3.2606 38 1 1.2897 -9.5205 4.9158 39 1 -0.2617 -11.3642 5.0688 40 1 -1.2115 -10.7529 3.6940 41 1 -1.9853 -7.8839 6.2157 42 1 0.3955 -7.2335 5.4939 43 1 -0.9453 -6.5986 4.5174 44 1 2.2964 -4.7451 2.4155 45 1 2.8248 -6.0633 1.3239 46 1 2.9743 -3.6630 0.2582 47 1 1.8297 -3.5775 -1.0779 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088021982.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:22 Heat of formation + Delta-G solvation = -69.217875 kcal Electronic energy + Delta-G solvation = -28170.978140 eV Core-core repulsion = 24352.893608 eV Total energy + Delta-G solvation = -3818.084533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.94238 -41.03897 -39.75252 -37.39290 -37.19581 -34.28263 -34.01719 -33.02189 -32.27384 -30.85172 -29.18255 -27.27676 -25.84206 -25.27567 -24.13873 -23.33317 -23.06571 -20.95154 -19.83935 -19.33979 -19.02484 -18.29095 -17.90953 -17.34508 -16.86289 -16.77400 -16.63231 -16.07372 -15.83381 -15.64256 -15.37709 -15.15683 -14.91618 -14.75587 -14.55556 -14.33548 -14.06108 -13.65675 -13.61059 -13.40975 -13.02963 -12.90523 -12.86469 -12.78162 -12.49612 -12.26773 -12.20688 -12.02760 -11.97659 -11.77507 -11.46919 -11.23641 -11.19456 -10.89967 -10.85794 -10.49503 -10.16488 -9.66664 -8.67112 -7.69099 -5.35066 1.44872 1.47332 1.48221 1.57491 1.59007 1.86030 2.30424 2.51902 3.21331 3.27137 3.49806 3.54394 3.59468 3.65211 3.71507 3.80795 3.86709 4.15179 4.18860 4.23981 4.31219 4.39187 4.45038 4.49183 4.62979 4.65065 4.70718 4.72188 4.82863 4.87369 4.93329 4.99006 5.03038 5.08911 5.12424 5.17827 5.23592 5.32201 5.36242 5.47659 5.70964 5.77025 5.99204 6.25266 6.44969 6.50729 7.06826 7.15940 7.23249 8.08558 8.23702 9.12470 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.028455 B = 0.002756 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.777611 B =10156.882436 C =10664.303944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.041 4.041 3 Si 0.954 3.046 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.285 4.285 8 H 0.059 0.941 9 N -0.598 5.598 10 C 0.163 3.837 11 C -0.113 4.113 12 C -0.079 4.079 13 H 0.102 0.898 14 C 0.105 3.895 15 N -0.612 5.612 16 C 0.538 3.462 17 O -0.577 6.577 18 C -0.113 4.113 19 H 0.130 0.870 20 C -0.099 4.099 21 C -0.127 4.127 22 C 0.516 3.484 23 O -0.606 6.606 24 N -0.707 5.707 25 C 0.122 3.878 26 C 0.122 3.878 27 C -0.095 4.095 28 H 0.093 0.907 29 C 0.174 3.826 30 H 0.250 0.750 31 H -0.015 1.015 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.408 0.592 42 H 0.069 0.931 43 H 0.108 0.892 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.010 0.990 47 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.395 -17.588 6.690 19.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.238 4.238 3 Si 0.783 3.217 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.416 4.416 8 H 0.077 0.923 9 N -0.322 5.322 10 C 0.037 3.963 11 C -0.151 4.151 12 C -0.098 4.098 13 H 0.120 0.880 14 C -0.017 4.017 15 N -0.345 5.345 16 C 0.327 3.673 17 O -0.457 6.457 18 C -0.135 4.135 19 H 0.148 0.852 20 C -0.137 4.137 21 C -0.166 4.166 22 C 0.305 3.695 23 O -0.488 6.488 24 N -0.357 5.357 25 C -0.002 4.002 26 C 0.000 4.000 27 C -0.114 4.114 28 H 0.111 0.889 29 C 0.048 3.952 30 H 0.060 0.940 31 H 0.003 0.997 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.129 0.871 40 H 0.141 0.859 41 H 0.244 0.756 42 H 0.087 0.913 43 H 0.126 0.874 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.028 0.972 47 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -4.151 -18.208 7.045 19.960 hybrid contribution 0.603 1.827 0.014 1.924 sum -3.547 -16.381 7.059 18.186 Atomic orbital electron populations 1.70155 1.06425 1.25656 1.53569 1.25553 0.95731 1.01037 1.01471 0.85485 0.78295 0.80288 0.77652 1.21031 1.21573 1.20332 1.19401 0.96673 0.88370 1.37151 0.92314 1.42938 1.42877 1.01430 1.44935 1.20167 0.92409 0.94368 0.89312 1.21685 1.01465 0.94402 0.97499 1.22103 0.96653 0.93846 0.97223 0.88009 1.22698 0.83240 0.95094 1.00619 1.48769 1.09054 1.24571 1.52070 1.20349 0.90065 0.79202 0.77683 1.90717 1.24489 1.68401 1.62070 1.21592 0.97266 0.95956 0.98647 0.85184 1.21445 0.96893 0.92790 1.02593 1.21664 0.96298 0.98816 0.99835 1.20688 0.82855 0.82811 0.83162 1.90758 1.41245 1.70132 1.46701 1.45370 1.39018 1.06574 1.44787 1.21320 0.93438 0.93722 0.91741 1.22111 0.91794 0.91725 0.94412 1.21532 0.95932 0.96372 0.97565 0.88854 1.19303 0.95569 0.84888 0.95416 0.94032 0.99734 0.93282 0.89892 0.92861 0.88277 0.88573 0.89340 0.91402 0.87069 0.85927 0.75562 0.91279 0.87438 0.92524 0.91028 0.97223 0.97210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.57 10.85 21.65 0.23 -51.34 16 2 C -0.04 -2.22 4.91 84.86 0.42 -1.80 16 3 Si 0.95 44.14 29.62 68.60 2.03 46.17 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.29 -15.51 9.29 84.03 0.78 -14.73 16 8 H 0.06 3.19 7.95 -2.91 -0.02 3.17 16 9 N -0.60 -28.58 3.24 -721.12 -2.33 -30.92 16 10 C 0.16 7.26 5.07 86.53 0.44 7.70 16 11 C -0.11 -3.40 4.82 30.32 0.15 -3.25 16 12 C -0.08 -1.95 3.66 -9.49 -0.03 -1.98 16 13 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 14 C 0.11 1.64 5.57 87.04 0.48 2.12 16 15 N -0.61 -12.53 3.34 -808.89 -2.70 -15.23 16 16 C 0.54 11.11 7.05 87.66 0.62 11.73 16 17 O -0.58 -16.87 16.35 -3.04 -0.05 -16.92 16 18 C -0.11 -1.42 1.97 -11.45 -0.02 -1.45 16 19 H 0.13 1.03 7.78 -2.39 -0.02 1.01 16 20 C -0.10 -1.29 4.64 30.72 0.14 -1.15 16 21 C -0.13 -1.49 6.03 29.69 0.18 -1.31 16 22 C 0.52 9.06 7.72 87.71 0.68 9.74 16 23 O -0.61 -16.21 17.78 -3.03 -0.05 -16.27 16 24 N -0.71 -9.13 5.45 -467.31 -2.55 -11.68 16 25 C 0.12 1.34 6.39 86.49 0.55 1.89 16 26 C 0.12 3.25 5.68 86.49 0.49 3.75 16 27 C -0.09 -2.67 2.84 -10.93 -0.03 -2.70 16 28 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 29 C 0.17 6.80 5.75 85.82 0.49 7.29 16 30 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 31 H -0.02 -0.78 8.07 -2.39 -0.02 -0.80 16 32 H 0.05 2.55 5.82 -2.39 -0.01 2.53 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.05 1.57 6.62 -2.38 -0.02 1.55 16 35 H 0.10 1.04 8.11 -2.39 -0.02 1.02 16 36 H 0.10 1.08 5.96 -2.39 -0.01 1.06 16 37 H 0.09 1.16 8.11 -2.38 -0.02 1.15 16 38 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 39 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.41 4.69 8.80 -92.71 -0.82 3.87 16 42 H 0.07 0.89 8.11 -2.39 -0.02 0.87 16 43 H 0.11 0.79 6.26 -2.39 -0.01 0.78 16 44 H 0.06 1.73 7.18 -2.38 -0.02 1.71 16 45 H 0.07 1.99 8.01 -2.39 -0.02 1.97 16 46 H 0.01 0.40 7.81 -2.39 -0.02 0.38 16 47 H 0.01 0.41 8.13 -2.39 -0.02 0.39 16 Total: -1.00 -73.38 359.21 0.08 -73.30 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 0.17 Total: 7.03 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 5.33 Total: 15.85 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -7.35 Total: -109.16 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.10 Total: -33.19 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -73.38 0.08 -73.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088021982.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.082 kcal (2) G-P(sol) polarization free energy of solvation -73.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds