Wall clock time and date at job start Fri Apr 10 2020 18:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50699 * 110.43508 * 2 1 4 4 O 1.21282 * 120.00015 * 120.35254 * 3 2 1 5 5 N 1.34776 * 119.99930 * 300.34862 * 3 2 1 6 6 C 1.47767 * 125.81597 * 184.52382 * 5 3 2 7 7 C 1.56204 * 103.99843 * 154.06672 * 6 5 3 8 8 H 1.09006 * 113.90603 * 161.25986 * 7 6 5 9 9 C 1.51695 * 106.19065 * 285.93495 * 7 6 5 10 10 C 1.51607 * 111.34611 * 168.58096 * 9 7 6 11 11 N 1.44325 * 113.11277 * 320.98436 * 10 9 7 12 12 C 1.36927 * 116.35705 * 187.25804 * 11 10 9 13 13 H 1.08003 * 120.00663 * 148.37642 * 12 11 10 14 14 C 1.38817 * 119.99832 * 328.37236 * 12 11 10 15 15 N 1.31612 * 120.00330 * 345.39699 * 14 12 11 16 16 Si 1.86807 * 119.99910 * 165.39514 * 14 12 11 17 17 H 1.48503 * 109.46923 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47176 * 120.00257 * 16 14 12 19 19 H 1.48499 * 109.46828 * 240.00445 * 16 14 12 20 20 C 1.43998 * 127.28936 * 7.28249 * 11 10 9 21 21 C 1.49957 * 116.09729 * 2.48359 * 20 11 10 22 22 H 1.08997 * 108.82517 * 141.04991 * 21 20 11 23 23 C 1.47612 * 125.81835 * 4.83752 * 5 3 2 24 24 C 1.54632 * 110.49091 * 237.45732 * 2 1 3 25 25 C 1.54474 * 101.76824 * 216.52922 * 24 2 1 26 26 N 1.46759 * 105.47373 * 25.40950 * 25 24 2 27 27 C 1.34418 * 111.30303 * 342.99040 * 26 25 24 28 28 O 1.21285 * 124.93953 * 180.38662 * 27 26 25 29 29 H 1.09000 * 109.47373 * 197.15282 * 1 2 3 30 30 H 1.08995 * 109.47721 * 317.15264 * 1 2 3 31 31 H 1.09000 * 109.47280 * 77.15462 * 1 2 3 32 32 H 1.08998 * 110.49819 * 272.80281 * 6 5 3 33 33 H 1.08991 * 110.49877 * 35.48935 * 6 5 3 34 34 H 1.09000 * 109.11766 * 48.14192 * 9 7 6 35 35 H 1.08998 * 109.22655 * 289.08710 * 9 7 6 36 36 H 1.09001 * 108.75404 * 200.04860 * 10 9 7 37 37 H 1.09000 * 108.75224 * 81.92216 * 10 9 7 38 38 H 0.97004 * 120.00658 * 180.02562 * 15 14 12 39 39 H 1.09002 * 108.15713 * 240.75945 * 20 11 10 40 40 H 1.08998 * 108.15632 * 124.20009 * 20 11 10 41 41 H 1.08999 * 110.08384 * 299.81633 * 23 5 3 42 42 H 1.09003 * 110.08415 * 61.32382 * 23 5 3 43 43 H 1.08998 * 110.97027 * 98.40216 * 24 2 1 44 44 H 1.09002 * 110.96508 * 334.64538 * 24 2 1 45 45 H 1.09002 * 110.24109 * 266.41363 * 25 24 2 46 46 H 1.08995 * 110.32137 * 144.45767 * 25 24 2 47 47 H 0.97010 * 124.34598 * 162.71946 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0561 1.4122 0.0000 4 8 2.7652 1.7951 0.9064 5 7 1.7387 2.2495 -1.0073 6 6 2.2555 3.6223 -1.1859 7 6 2.1540 3.8670 -2.7253 8 1 2.1849 4.9192 -3.0083 9 6 3.2704 3.0570 -3.3568 10 6 3.1149 2.9836 -4.8631 11 7 1.7427 2.8337 -5.2844 12 6 1.5379 2.6063 -6.6190 13 1 0.7000 2.0065 -6.9424 14 6 2.4073 3.1468 -7.5566 15 7 3.2456 4.0986 -7.2049 16 14 2.3875 2.5233 -9.3174 17 1 1.3616 1.4583 -9.4538 18 1 2.0634 3.6442 -10.2358 19 1 3.7223 1.9711 -9.6619 20 6 0.5647 2.8968 -4.4586 21 6 0.7914 3.2040 -3.0084 22 1 0.0001 3.8686 -2.6618 23 6 0.8107 1.9539 -2.1165 24 6 2.0712 -0.7792 -1.2211 25 6 3.3198 -1.4679 -0.6270 26 7 3.0562 -1.5827 0.8121 27 6 2.0594 -0.7653 1.1927 28 8 1.6445 -0.6572 2.3273 29 1 -0.3634 -0.9819 0.3031 30 1 -0.3634 0.7534 0.6988 31 1 -0.3634 0.2285 -1.0019 32 1 1.6374 4.3366 -0.6420 33 1 3.2927 3.6855 -0.8571 34 1 3.2540 2.0468 -2.9476 35 1 4.2282 3.5202 -3.1199 36 1 3.6900 2.1351 -5.2338 37 1 3.5186 3.8961 -5.3019 38 1 3.8529 4.4766 -7.8601 39 1 0.0505 1.9381 -4.5265 40 1 -0.0966 3.6605 -4.8681 41 1 1.1676 1.0946 -2.6841 42 1 -0.1877 1.7560 -1.7265 43 1 2.3471 -0.0990 -2.0268 44 1 1.3461 -1.5163 -1.5660 45 1 4.2059 -0.8572 -0.8006 46 1 3.4518 -2.4566 -1.0665 47 1 3.5369 -2.1755 1.4110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088103644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:18 Heat of formation + Delta-G solvation = -31.044607 kcal Electronic energy + Delta-G solvation = -29282.036079 eV Core-core repulsion = 25465.606863 eV Total energy + Delta-G solvation = -3816.429216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.47929 -39.88035 -38.06745 -36.51605 -35.67044 -33.76729 -32.32608 -31.54932 -30.26390 -29.06706 -27.88747 -26.12533 -25.31693 -23.91347 -22.75198 -21.92856 -21.72940 -20.77465 -18.94653 -17.92164 -17.59450 -17.16230 -16.94265 -16.07705 -15.95575 -15.15795 -14.97952 -14.58106 -14.45827 -14.15993 -13.99402 -13.89496 -13.60961 -13.43095 -13.22620 -13.02421 -12.78682 -12.69459 -12.36245 -12.25618 -12.07646 -11.92648 -11.64185 -11.40237 -11.24976 -11.08571 -10.84196 -10.57986 -10.27660 -10.25351 -9.99811 -9.86517 -9.72430 -9.64000 -9.56585 -9.29784 -8.65255 -8.52698 -6.63440 -5.60427 -3.39849 2.30042 2.52871 2.96262 3.23772 3.32363 3.40712 3.42316 3.92350 4.13987 4.28814 4.43067 4.54501 4.69704 4.75094 4.87055 5.02926 5.04255 5.23247 5.30300 5.34127 5.37753 5.41958 5.45290 5.53718 5.57350 5.63128 5.73329 5.79995 5.87498 5.91618 5.95465 6.13747 6.22030 6.29916 6.51946 6.55666 6.58210 6.63995 6.75037 6.78690 6.82182 7.29678 7.49334 7.75015 7.97457 8.05327 8.11395 8.53495 9.27041 9.94138 10.23772 11.19811 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.020511 B = 0.003661 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.812592 B = 7645.367646 C = 8080.778281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 C 0.552 3.448 4 O -0.535 6.535 5 N -0.608 5.608 6 C 0.107 3.893 7 C -0.080 4.080 8 H 0.102 0.898 9 C -0.121 4.121 10 C 0.152 3.848 11 N -0.587 5.587 12 C -0.266 4.266 13 H 0.064 0.936 14 C 0.008 3.992 15 N -0.895 5.895 16 Si 0.903 3.097 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.289 1.289 20 C 0.176 3.824 21 C -0.100 4.100 22 H 0.074 0.926 23 C 0.099 3.901 24 C -0.129 4.129 25 C 0.100 3.900 26 N -0.729 5.729 27 C 0.551 3.449 28 O -0.518 6.518 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.015 0.985 37 H 0.091 0.909 38 H 0.252 0.748 39 H 0.013 0.987 40 H 0.024 0.976 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.778 -8.344 10.382 13.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.121 4.121 3 C 0.339 3.661 4 O -0.411 6.411 5 N -0.342 5.342 6 C -0.015 4.015 7 C -0.099 4.099 8 H 0.120 0.880 9 C -0.159 4.159 10 C 0.028 3.972 11 N -0.311 5.311 12 C -0.396 4.396 13 H 0.082 0.918 14 C -0.192 4.192 15 N -0.540 5.540 16 Si 0.733 3.267 17 H -0.202 1.202 18 H -0.217 1.217 19 H -0.216 1.216 20 C 0.050 3.950 21 C -0.119 4.119 22 H 0.093 0.907 23 C -0.023 4.023 24 C -0.167 4.167 25 C -0.025 4.025 26 N -0.385 5.385 27 C 0.334 3.666 28 O -0.392 6.392 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.033 0.967 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.030 0.970 40 H 0.042 0.958 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.121 0.879 44 H 0.116 0.884 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.532 -7.971 11.451 14.180 hybrid contribution 0.325 -0.588 -0.822 1.061 sum -2.207 -8.558 10.630 13.824 Atomic orbital electron populations 1.21836 0.89820 1.03755 1.03763 1.21558 0.99653 0.93905 0.96983 1.19312 0.80513 0.85263 0.81043 1.90748 1.38352 1.77109 1.34937 1.48551 1.45534 1.15302 1.24772 1.22766 0.99714 0.82009 0.97054 1.22060 0.95358 1.00713 0.91806 0.87994 1.21407 0.96867 0.98461 0.99147 1.20407 0.85188 1.02979 0.88641 1.42627 0.99686 1.84249 1.04577 1.19188 1.12550 1.25622 0.82232 0.91815 1.25168 0.99678 0.96294 0.98012 1.69818 1.24930 1.26179 1.33050 0.86210 0.77468 0.78219 0.84793 1.20221 1.21670 1.21579 1.19341 0.90410 0.97993 0.87263 1.21528 0.98173 0.95501 0.96680 0.90712 1.22538 0.92825 0.99635 0.87265 1.22929 0.97468 0.99872 0.96423 1.22105 0.98388 1.01911 0.80055 1.46066 1.37471 1.44083 1.10881 1.19937 0.79218 0.78894 0.88503 1.90728 1.61323 1.65947 1.21186 0.91068 0.91210 0.89992 0.91653 0.90444 0.93683 0.92549 0.96711 0.89213 0.93698 0.96958 0.95829 0.90361 0.90899 0.87867 0.88372 0.90729 0.89510 0.74888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 7.81 37.15 0.29 -1.09 16 2 C -0.11 -1.40 0.55 -155.67 -0.09 -1.48 16 3 C 0.55 8.36 6.52 -10.99 -0.07 8.29 16 4 O -0.53 -10.24 16.41 5.56 0.09 -10.15 16 5 N -0.61 -8.34 2.69 -169.41 -0.46 -8.80 16 6 C 0.11 1.48 6.22 -1.63 -0.01 1.47 16 7 C -0.08 -1.22 3.71 -88.96 -0.33 -1.55 16 8 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 9 C -0.12 -2.07 4.92 -28.10 -0.14 -2.21 16 10 C 0.15 3.37 5.14 -5.91 -0.03 3.34 16 11 N -0.59 -13.36 3.22 -179.58 -0.58 -13.94 16 12 C -0.27 -6.82 9.28 -15.06 -0.14 -6.96 16 13 H 0.06 1.62 7.87 -52.48 -0.41 1.21 16 14 C 0.01 0.20 5.13 -17.43 -0.09 0.11 16 15 N -0.90 -24.48 10.58 55.49 0.59 -23.89 16 16 Si 0.90 20.68 29.58 -169.99 -5.03 15.65 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.18 3.26 5.67 -6.88 -0.04 3.22 16 21 C -0.10 -1.45 2.72 -91.23 -0.25 -1.69 16 22 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 23 C 0.10 1.23 3.90 -3.13 -0.01 1.22 16 24 C -0.13 -1.20 5.54 -25.10 -0.14 -1.34 16 25 C 0.10 0.85 7.78 -3.13 -0.02 0.83 16 26 N -0.73 -7.70 6.24 -59.21 -0.37 -8.07 16 27 C 0.55 7.82 6.40 -10.86 -0.07 7.75 16 28 O -0.52 -9.31 17.87 5.55 0.10 -9.21 16 29 H 0.07 0.66 8.01 -51.93 -0.42 0.25 16 30 H 0.07 0.80 8.04 -51.93 -0.42 0.38 16 31 H 0.08 0.69 5.44 -51.93 -0.28 0.41 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.14 7.95 -51.93 -0.41 0.72 16 34 H 0.04 0.74 6.76 -51.93 -0.35 0.39 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.01 0.35 8.12 -51.93 -0.42 -0.07 16 37 H 0.09 2.30 5.57 -51.93 -0.29 2.01 16 38 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 39 H 0.01 0.23 7.77 -51.93 -0.40 -0.18 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.98 5.66 -51.93 -0.29 0.69 16 42 H 0.07 0.76 5.99 -51.93 -0.31 0.45 16 43 H 0.10 1.06 5.81 -51.93 -0.30 0.75 16 44 H 0.10 0.70 7.91 -51.93 -0.41 0.29 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.41 3.54 8.96 -40.82 -0.37 3.17 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -33.05 354.38 -8.64 -41.69 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.19 Total: 1.48 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: -1.14 Total: 9.91 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.82 Total: -54.71 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.19 Total: -19.37 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.05 -8.64 -41.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088103644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.644 kcal (2) G-P(sol) polarization free energy of solvation -33.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds