Wall clock time and date at job start Fri Apr 10 2020 18:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50699 * 110.43508 * 2 1 4 4 O 1.21282 * 120.00015 * 120.35254 * 3 2 1 5 5 N 1.34776 * 119.99930 * 300.34862 * 3 2 1 6 6 C 1.47767 * 125.81597 * 184.52382 * 5 3 2 7 7 C 1.56204 * 103.99843 * 154.06672 * 6 5 3 8 8 H 1.09006 * 113.90603 * 161.25986 * 7 6 5 9 9 C 1.51695 * 106.19065 * 285.93495 * 7 6 5 10 10 C 1.51607 * 111.34611 * 168.58096 * 9 7 6 11 11 N 1.44325 * 113.11277 * 320.98436 * 10 9 7 12 12 C 1.36927 * 116.35705 * 187.25804 * 11 10 9 13 13 H 1.08003 * 120.00663 * 148.37642 * 12 11 10 14 14 C 1.38817 * 119.99832 * 328.37236 * 12 11 10 15 15 N 1.31612 * 120.00330 * 345.39699 * 14 12 11 16 16 Si 1.86807 * 119.99910 * 165.39514 * 14 12 11 17 17 H 1.48503 * 109.46923 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47176 * 120.00257 * 16 14 12 19 19 H 1.48499 * 109.46828 * 240.00445 * 16 14 12 20 20 C 1.43998 * 127.28936 * 7.28249 * 11 10 9 21 21 C 1.49957 * 116.09729 * 2.48359 * 20 11 10 22 22 H 1.08997 * 108.82517 * 141.04991 * 21 20 11 23 23 C 1.47612 * 125.81835 * 4.83752 * 5 3 2 24 24 C 1.54632 * 110.49091 * 237.45732 * 2 1 3 25 25 C 1.54474 * 101.76824 * 216.52922 * 24 2 1 26 26 N 1.46759 * 105.47373 * 25.40950 * 25 24 2 27 27 C 1.34418 * 111.30303 * 342.99040 * 26 25 24 28 28 O 1.21285 * 124.93953 * 180.38662 * 27 26 25 29 29 H 1.09000 * 109.47373 * 197.15282 * 1 2 3 30 30 H 1.08995 * 109.47721 * 317.15264 * 1 2 3 31 31 H 1.09000 * 109.47280 * 77.15462 * 1 2 3 32 32 H 1.08998 * 110.49819 * 272.80281 * 6 5 3 33 33 H 1.08991 * 110.49877 * 35.48935 * 6 5 3 34 34 H 1.09000 * 109.11766 * 48.14192 * 9 7 6 35 35 H 1.08998 * 109.22655 * 289.08710 * 9 7 6 36 36 H 1.09001 * 108.75404 * 200.04860 * 10 9 7 37 37 H 1.09000 * 108.75224 * 81.92216 * 10 9 7 38 38 H 0.97004 * 120.00658 * 180.02562 * 15 14 12 39 39 H 1.09002 * 108.15713 * 240.75945 * 20 11 10 40 40 H 1.08998 * 108.15632 * 124.20009 * 20 11 10 41 41 H 1.08999 * 110.08384 * 299.81633 * 23 5 3 42 42 H 1.09003 * 110.08415 * 61.32382 * 23 5 3 43 43 H 1.08998 * 110.97027 * 98.40216 * 24 2 1 44 44 H 1.09002 * 110.96508 * 334.64538 * 24 2 1 45 45 H 1.09002 * 110.24109 * 266.41363 * 25 24 2 46 46 H 1.08995 * 110.32137 * 144.45767 * 25 24 2 47 47 H 0.97010 * 124.34598 * 162.71946 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0561 1.4122 0.0000 4 8 2.7652 1.7951 0.9064 5 7 1.7387 2.2495 -1.0073 6 6 2.2555 3.6223 -1.1859 7 6 2.1540 3.8670 -2.7253 8 1 2.1849 4.9192 -3.0083 9 6 3.2704 3.0570 -3.3568 10 6 3.1149 2.9836 -4.8631 11 7 1.7427 2.8337 -5.2844 12 6 1.5379 2.6063 -6.6190 13 1 0.7000 2.0065 -6.9424 14 6 2.4073 3.1468 -7.5566 15 7 3.2456 4.0986 -7.2049 16 14 2.3875 2.5233 -9.3174 17 1 1.3616 1.4583 -9.4538 18 1 2.0634 3.6442 -10.2358 19 1 3.7223 1.9711 -9.6619 20 6 0.5647 2.8968 -4.4586 21 6 0.7914 3.2040 -3.0084 22 1 0.0001 3.8686 -2.6618 23 6 0.8107 1.9539 -2.1165 24 6 2.0712 -0.7792 -1.2211 25 6 3.3198 -1.4679 -0.6270 26 7 3.0562 -1.5827 0.8121 27 6 2.0594 -0.7653 1.1927 28 8 1.6445 -0.6572 2.3273 29 1 -0.3634 -0.9819 0.3031 30 1 -0.3634 0.7534 0.6988 31 1 -0.3634 0.2285 -1.0019 32 1 1.6374 4.3366 -0.6420 33 1 3.2927 3.6855 -0.8571 34 1 3.2540 2.0468 -2.9476 35 1 4.2282 3.5202 -3.1199 36 1 3.6900 2.1351 -5.2338 37 1 3.5186 3.8961 -5.3019 38 1 3.8529 4.4766 -7.8601 39 1 0.0505 1.9381 -4.5265 40 1 -0.0966 3.6605 -4.8681 41 1 1.1676 1.0946 -2.6841 42 1 -0.1877 1.7560 -1.7265 43 1 2.3471 -0.0990 -2.0268 44 1 1.3461 -1.5163 -1.5660 45 1 4.2059 -0.8572 -0.8006 46 1 3.4518 -2.4566 -1.0665 47 1 3.5369 -2.1755 1.4110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088103644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:17 Heat of formation + Delta-G solvation = -54.597255 kcal Electronic energy + Delta-G solvation = -29283.057398 eV Core-core repulsion = 25465.606863 eV Total energy + Delta-G solvation = -3817.450535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.51396 -41.05504 -39.35846 -37.55455 -37.23186 -34.84573 -33.81663 -32.95346 -31.85688 -29.86397 -29.22114 -27.35854 -26.47756 -25.41548 -23.91110 -23.25384 -22.93697 -21.87121 -19.98601 -19.38659 -18.83465 -18.54584 -17.97282 -17.25128 -17.18415 -16.81213 -16.11331 -15.81716 -15.63610 -15.41437 -15.37761 -15.08459 -14.74776 -14.72255 -14.52309 -14.11221 -14.02606 -13.92161 -13.48115 -13.31986 -13.24495 -13.15104 -12.86593 -12.77225 -12.63147 -12.35706 -12.21794 -12.11329 -12.00178 -11.68510 -11.38734 -11.23918 -11.13075 -11.03251 -10.87146 -10.53601 -10.17303 -9.70965 -8.54723 -7.54424 -5.38848 1.23609 1.40462 1.49717 1.52903 1.61838 1.94058 2.34666 2.55652 3.01458 3.25098 3.32730 3.38834 3.53010 3.65099 3.79289 3.82491 3.91431 4.01282 4.20423 4.26797 4.34301 4.50411 4.53934 4.62374 4.64398 4.65557 4.68884 4.71553 4.81234 4.93002 4.96469 4.99123 5.03334 5.10737 5.13933 5.15747 5.25112 5.35469 5.41818 5.51624 5.71524 5.75173 5.90660 6.10180 6.37649 6.56726 6.93520 7.13469 7.32045 8.14510 8.32249 9.20442 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.020511 B = 0.003661 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.812592 B = 7645.367646 C = 8080.778281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 C 0.549 3.451 4 O -0.583 6.583 5 N -0.603 5.603 6 C 0.113 3.887 7 C -0.078 4.078 8 H 0.097 0.903 9 C -0.108 4.108 10 C 0.163 3.837 11 N -0.597 5.597 12 C -0.273 4.273 13 H 0.066 0.934 14 C -0.044 4.044 15 N -0.923 5.923 16 Si 0.961 3.039 17 H -0.265 1.265 18 H -0.294 1.294 19 H -0.294 1.294 20 C 0.174 3.826 21 C -0.095 4.095 22 H 0.099 0.901 23 C 0.104 3.896 24 C -0.123 4.123 25 C 0.096 3.904 26 N -0.718 5.718 27 C 0.537 3.463 28 O -0.568 6.568 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.058 0.942 36 H -0.014 1.014 37 H 0.054 0.946 38 H 0.247 0.753 39 H 0.029 0.971 40 H 0.010 0.990 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.129 0.871 45 H 0.068 0.932 46 H 0.124 0.876 47 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.215 -10.003 10.196 14.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.120 4.120 3 C 0.337 3.663 4 O -0.463 6.463 5 N -0.335 5.335 6 C -0.009 4.009 7 C -0.097 4.097 8 H 0.115 0.885 9 C -0.146 4.146 10 C 0.038 3.962 11 N -0.322 5.322 12 C -0.404 4.404 13 H 0.084 0.916 14 C -0.240 4.240 15 N -0.569 5.569 16 Si 0.789 3.211 17 H -0.189 1.189 18 H -0.221 1.221 19 H -0.221 1.221 20 C 0.048 3.952 21 C -0.114 4.114 22 H 0.117 0.883 23 C -0.017 4.017 24 C -0.161 4.161 25 C -0.028 4.028 26 N -0.373 5.373 27 C 0.322 3.678 28 O -0.446 6.446 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.004 0.996 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.028 0.972 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.147 0.853 45 H 0.086 0.914 46 H 0.142 0.858 47 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -3.983 -9.660 11.228 15.338 hybrid contribution 0.792 -0.069 -0.792 1.123 sum -3.190 -9.729 10.436 14.620 Atomic orbital electron populations 1.21879 0.88225 1.04084 1.04744 1.21585 1.00896 0.91999 0.97490 1.19815 0.79747 0.86321 0.80369 1.90727 1.40643 1.78166 1.36774 1.48551 1.45305 1.15011 1.24676 1.22670 0.99712 0.82687 0.95845 1.21972 0.95049 1.00147 0.92577 0.88532 1.21232 0.98067 0.99584 0.95728 1.20084 0.84715 0.99866 0.91560 1.42842 1.00948 1.83955 1.04409 1.19518 1.12142 1.24981 0.83798 0.91623 1.25848 0.99911 0.96857 1.01374 1.70028 1.25727 1.27477 1.33715 0.85306 0.77276 0.77691 0.80782 1.18921 1.22145 1.22070 1.19450 0.88445 0.98289 0.88991 1.21450 0.98364 0.97024 0.94593 0.88311 1.22608 0.94085 0.98537 0.86500 1.23017 0.98252 1.00011 0.94793 1.22336 0.97854 1.03879 0.78702 1.46127 1.36101 1.42931 1.12093 1.20386 0.79728 0.79280 0.88384 1.90692 1.63145 1.67661 1.23114 0.89917 0.92715 0.87642 0.90096 0.91391 0.92667 0.92281 0.99565 0.92825 0.94352 0.95294 0.97177 0.89845 0.87826 0.88448 0.85275 0.91406 0.85820 0.73949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 7.81 71.98 0.56 -1.76 16 2 C -0.11 -2.51 0.55 -52.94 -0.03 -2.54 16 3 C 0.55 15.78 6.52 87.66 0.57 16.35 16 4 O -0.58 -22.22 16.41 -3.04 -0.05 -22.27 16 5 N -0.60 -15.08 2.69 -808.27 -2.18 -17.26 16 6 C 0.11 2.93 6.22 87.25 0.54 3.47 16 7 C -0.08 -2.24 3.71 -9.72 -0.04 -2.28 16 8 H 0.10 2.91 8.14 -2.38 -0.02 2.89 16 9 C -0.11 -3.63 4.92 29.71 0.15 -3.49 16 10 C 0.16 7.28 5.14 86.33 0.44 7.72 16 11 N -0.60 -26.86 3.22 -722.06 -2.32 -29.18 16 12 C -0.27 -13.94 9.28 84.04 0.78 -13.16 16 13 H 0.07 3.26 7.87 -2.91 -0.02 3.24 16 14 C -0.04 -2.31 5.13 84.86 0.44 -1.87 16 15 N -0.92 -51.70 10.58 21.65 0.23 -51.47 16 16 Si 0.96 42.63 29.58 68.60 2.03 44.66 16 17 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 18 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 20 C 0.17 6.05 5.67 85.87 0.49 6.54 16 21 C -0.10 -2.49 2.72 -11.19 -0.03 -2.52 16 22 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 23 C 0.10 2.19 3.90 86.36 0.34 2.53 16 24 C -0.12 -1.86 5.54 31.65 0.18 -1.68 16 25 C 0.10 1.35 7.78 86.83 0.68 2.03 16 26 N -0.72 -13.88 6.24 -459.83 -2.87 -16.75 16 27 C 0.54 14.69 6.40 87.90 0.56 15.25 16 28 O -0.57 -20.54 17.87 -3.05 -0.05 -20.59 16 29 H 0.08 1.28 8.01 -2.39 -0.02 1.27 16 30 H 0.05 1.14 8.04 -2.39 -0.02 1.12 16 31 H 0.11 1.29 5.44 -2.39 -0.01 1.28 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.07 1.92 7.95 -2.39 -0.02 1.91 16 34 H 0.05 1.74 6.76 -2.39 -0.02 1.72 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H -0.01 -0.68 8.12 -2.39 -0.02 -0.70 16 37 H 0.05 2.85 5.57 -2.39 -0.01 2.84 16 38 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 39 H 0.03 0.94 7.77 -2.39 -0.02 0.92 16 40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.08 1.74 5.66 -2.39 -0.01 1.73 16 42 H 0.10 1.63 5.99 -2.39 -0.01 1.62 16 43 H 0.10 1.64 5.81 -2.39 -0.01 1.63 16 44 H 0.13 1.19 7.91 -2.39 -0.02 1.17 16 45 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.42 6.59 8.96 -92.70 -0.83 5.76 16 Total: -1.00 -74.73 354.38 0.57 -74.16 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.16 Total: 14.10 kcal Atomic # 6 Polarization: 18.98 SS G_CDS: 5.62 Total: 24.61 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -7.14 Total: -114.66 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -0.10 Total: -42.86 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -74.73 0.57 -74.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088103644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.563 kcal (2) G-P(sol) polarization free energy of solvation -74.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds