Wall clock time and date at job start Fri Apr 10 2020 18:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00104 * 2 1 4 4 H 1.48495 * 109.47243 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47163 * 300.00430 * 3 2 1 6 6 H 1.48496 * 109.47105 * 59.99984 * 3 2 1 7 7 C 1.38810 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99934 * 155.08118 * 7 2 1 9 9 N 1.36940 * 119.99918 * 335.08885 * 7 2 1 10 10 C 1.44319 * 116.35330 * 332.55170 * 9 7 2 11 11 C 1.51598 * 113.11413 * 187.26308 * 10 9 7 12 12 C 1.52881 * 111.55644 * 320.91112 * 11 10 9 13 13 H 1.08997 * 112.86289 * 294.19772 * 12 11 10 14 14 C 1.56202 * 106.67391 * 168.35118 * 12 11 10 15 15 N 1.47754 * 104.00487 * 286.46492 * 14 12 11 16 16 C 1.34786 * 125.81701 * 154.06197 * 15 14 12 17 17 O 1.21274 * 119.99937 * 359.71930 * 16 15 14 18 18 C 1.50697 * 119.99729 * 179.71594 * 16 15 14 19 19 C 1.53004 * 109.46728 * 180.02562 * 18 16 15 20 20 H 1.08991 * 110.28793 * 304.47926 * 19 18 16 21 21 C 1.54478 * 110.24674 * 182.50191 * 19 18 16 22 22 C 1.54634 * 101.76421 * 266.41842 * 21 19 18 23 23 C 1.51281 * 104.19589 * 335.19860 * 22 21 19 24 24 O 1.21279 * 124.94461 * 196.28051 * 23 22 21 25 25 N 1.34423 * 110.11332 * 16.25352 * 23 22 21 26 26 C 1.47612 * 108.36568 * 333.79916 * 15 14 12 27 27 C 1.53565 * 106.34368 * 0.86371 * 26 15 14 28 28 H 1.08997 * 108.71146 * 270.18734 * 27 26 15 29 29 C 1.43997 * 116.35458 * 152.53932 * 9 7 2 30 30 H 0.97006 * 120.00184 * 359.97438 * 1 2 3 31 31 H 1.09007 * 108.75838 * 308.19840 * 10 9 7 32 32 H 1.08998 * 108.75672 * 66.32319 * 10 9 7 33 33 H 1.08999 * 109.06491 * 81.45353 * 11 10 9 34 34 H 1.09002 * 109.06740 * 200.45486 * 11 10 9 35 35 H 1.09007 * 110.62395 * 167.81178 * 14 12 11 36 36 H 1.09001 * 110.48357 * 45.05438 * 14 12 11 37 37 H 1.08997 * 109.47668 * 60.00420 * 18 16 15 38 38 H 1.08999 * 109.47334 * 299.99946 * 18 16 15 39 39 H 1.08996 * 110.97489 * 148.29918 * 21 19 18 40 40 H 1.09002 * 110.96633 * 24.52969 * 21 19 18 41 41 H 1.09002 * 110.47965 * 216.52173 * 22 21 19 42 42 H 1.08998 * 110.49181 * 93.88191 * 22 21 19 43 43 H 0.97001 * 124.34426 * 180.13877 * 25 23 22 44 44 H 1.09000 * 110.08402 * 120.08156 * 26 15 14 45 45 H 1.09001 * 110.08307 * 241.58570 * 26 15 14 46 46 H 1.08995 * 108.15807 * 60.77413 * 29 9 7 47 47 H 1.09010 * 107.99057 * 304.09312 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0149 -1.2455 -0.3947 9 7 1.4211 -2.3331 0.4985 10 6 0.4153 -2.1365 1.5146 11 6 -0.0618 -3.4332 2.1384 12 6 -0.1923 -4.5436 1.0957 13 1 -0.9720 -4.3446 0.3605 14 6 -0.3905 -5.8775 1.8839 15 7 0.9468 -6.1647 2.4427 16 6 1.1995 -6.8868 3.5524 17 8 0.2828 -7.3617 4.1886 18 6 2.6212 -7.1041 4.0024 19 6 2.6289 -7.9504 5.2770 20 1 2.0125 -7.4830 6.0447 21 6 4.0749 -8.1318 5.7895 22 6 4.4759 -9.4735 5.1337 23 6 3.1589 -10.1799 4.8988 24 8 3.0377 -11.3633 4.6629 25 7 2.1424 -9.3050 4.9902 26 6 1.9593 -5.5314 1.5750 27 6 1.1849 -4.8159 0.4585 28 1 1.0466 -5.5094 -0.3709 29 6 1.8744 -3.5851 -0.0497 30 1 -0.4851 0.8401 0.0004 31 1 0.8284 -1.5017 2.2986 32 1 -0.4388 -1.6272 1.0684 33 1 0.6507 -3.7441 2.9024 34 1 -1.0334 -3.2679 2.6042 35 1 -0.7035 -6.6773 1.2125 36 1 -1.1179 -5.7431 2.6844 37 1 3.0903 -6.1408 4.2027 38 1 3.1751 -7.6221 3.2194 39 1 4.0969 -8.2071 6.8767 40 1 4.7161 -7.3213 5.4430 41 1 5.1054 -10.0544 5.8077 42 1 4.9885 -9.2978 4.1880 43 1 1.2077 -9.5384 4.8769 44 1 2.5437 -4.8104 2.1465 45 1 2.6152 -6.2909 1.1493 46 1 2.9397 -3.6817 0.1596 47 1 1.7453 -3.5455 -1.1314 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088137914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:21 Heat of formation + Delta-G solvation = -45.519050 kcal Electronic energy + Delta-G solvation = -28037.399030 eV Core-core repulsion = 24220.342155 eV Total energy + Delta-G solvation = -3817.056875 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.94013 -40.14569 -38.45444 -36.72487 -35.66592 -32.75720 -31.71540 -31.54316 -31.04386 -30.19460 -28.00293 -26.19096 -25.34483 -23.56355 -22.15140 -21.74924 -21.30774 -20.69926 -19.30783 -17.98449 -17.73047 -17.16309 -16.87739 -16.28023 -16.15213 -15.43168 -15.11867 -14.92577 -14.46983 -14.06027 -13.99223 -13.84827 -13.65815 -13.25407 -13.21337 -13.09868 -12.93595 -12.77202 -12.53055 -12.43666 -12.11406 -11.81590 -11.59268 -11.34904 -11.29931 -11.18665 -10.81676 -10.63101 -10.32525 -10.26453 -10.09323 -9.97902 -9.79492 -9.68089 -9.61967 -9.34923 -8.64897 -8.51122 -6.67338 -5.68400 -3.33603 2.39123 2.56333 2.91366 3.19297 3.33148 3.42225 3.44398 3.98587 4.11771 4.32092 4.41372 4.47661 4.67535 4.68658 4.80378 4.90153 5.01795 5.06988 5.20445 5.26475 5.30224 5.32699 5.45237 5.47697 5.49566 5.50902 5.61034 5.66926 5.76524 5.87283 5.91701 6.08980 6.18089 6.25832 6.48067 6.53340 6.60789 6.62644 6.71828 6.79211 6.89520 7.24182 7.50545 7.76255 7.87400 8.05442 8.10099 8.47643 9.23155 9.92781 10.22181 11.17586 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.023313 B = 0.002802 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.783040 B = 9989.681816 C =10483.206776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.007 3.993 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.270 4.270 8 H 0.066 0.934 9 N -0.586 5.586 10 C 0.155 3.845 11 C -0.119 4.119 12 C -0.083 4.083 13 H 0.101 0.899 14 C 0.106 3.894 15 N -0.613 5.613 16 C 0.530 3.470 17 O -0.552 6.552 18 C -0.153 4.153 19 C 0.146 3.854 20 H 0.098 0.902 21 C -0.129 4.129 22 C -0.158 4.158 23 C 0.515 3.485 24 O -0.542 6.542 25 N -0.716 5.716 26 C 0.108 3.892 27 C -0.099 4.099 28 H 0.073 0.927 29 C 0.176 3.824 30 H 0.253 0.747 31 H 0.017 0.983 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.416 0.584 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.014 0.986 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.206 -13.294 8.621 17.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.193 4.193 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.400 4.400 8 H 0.083 0.917 9 N -0.310 5.310 10 C 0.030 3.970 11 C -0.157 4.157 12 C -0.102 4.102 13 H 0.119 0.881 14 C -0.016 4.016 15 N -0.346 5.346 16 C 0.319 3.681 17 O -0.431 6.431 18 C -0.194 4.194 19 C 0.040 3.960 20 H 0.116 0.884 21 C -0.167 4.167 22 C -0.198 4.198 23 C 0.301 3.699 24 O -0.419 6.419 25 N -0.372 5.372 26 C -0.014 4.014 27 C -0.119 4.119 28 H 0.091 0.909 29 C 0.050 3.950 30 H 0.063 0.937 31 H 0.035 0.965 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.257 0.743 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.032 0.968 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 5.661 -14.131 8.951 17.659 hybrid contribution 0.041 1.019 -0.209 1.041 sum 5.702 -13.112 8.743 16.759 Atomic orbital electron populations 1.70002 1.05528 1.25348 1.52226 1.24972 0.94953 0.98571 1.00847 0.86310 0.79688 0.84011 0.77286 1.20192 1.21789 1.21527 1.19148 0.96248 0.86595 1.37982 0.91651 1.42693 1.45462 1.00994 1.41872 1.20244 0.94762 0.92052 0.89897 1.21574 1.00420 0.96593 0.97116 1.22292 0.97113 0.93334 0.97441 0.88056 1.22704 0.84560 0.96910 0.97437 1.48729 1.09014 1.51495 1.25383 1.20145 0.91196 0.77512 0.79222 1.90662 1.47018 1.50568 1.54809 1.22201 0.95071 1.02725 0.99368 1.21381 0.95819 0.82898 0.95893 0.88368 1.22691 0.94750 0.97639 1.01602 1.22368 0.96559 0.97172 1.03743 1.20967 0.87521 0.86056 0.75380 1.90752 1.86534 1.15024 1.49603 1.46363 1.10032 1.08815 1.71960 1.22221 0.91132 0.96166 0.91905 1.21508 0.95649 0.98144 0.96564 0.90884 1.19344 0.95287 0.84519 0.95892 0.93698 0.96539 0.90179 0.93447 0.92569 0.91813 0.90400 0.87273 0.88494 0.89419 0.88647 0.88004 0.87756 0.74342 0.90644 0.91562 0.96807 0.95792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.70 10.92 55.49 0.61 -24.09 16 2 C 0.01 0.18 4.94 -17.43 -0.09 0.09 16 3 Si 0.90 20.93 29.62 -169.99 -5.04 15.90 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.27 -7.07 9.26 -15.06 -0.14 -7.21 16 8 H 0.07 1.70 7.94 -52.48 -0.42 1.28 16 9 N -0.59 -13.66 3.23 -179.58 -0.58 -14.24 16 10 C 0.16 3.50 5.14 -5.91 -0.03 3.47 16 11 C -0.12 -2.09 4.98 -27.50 -0.14 -2.22 16 12 C -0.08 -1.26 3.78 -88.35 -0.33 -1.60 16 13 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 14 C 0.11 1.43 6.25 -1.64 -0.01 1.42 16 15 N -0.61 -7.90 2.80 -169.42 -0.47 -8.37 16 16 C 0.53 6.64 7.74 -10.98 -0.09 6.56 16 17 O -0.55 -8.40 15.21 5.56 0.08 -8.31 16 18 C -0.15 -1.28 4.51 -27.88 -0.13 -1.41 16 19 C 0.15 1.16 3.02 -67.01 -0.20 0.95 16 20 H 0.10 0.81 7.99 -51.93 -0.42 0.40 16 21 C -0.13 -0.67 6.70 -25.10 -0.17 -0.83 16 22 C -0.16 -1.07 6.86 -26.74 -0.18 -1.25 16 23 C 0.51 5.78 8.43 -10.86 -0.09 5.69 16 24 O -0.54 -8.51 18.03 5.56 0.10 -8.41 16 25 N -0.72 -7.34 5.47 -52.76 -0.29 -7.63 16 26 C 0.11 1.33 5.19 -3.14 -0.02 1.32 16 27 C -0.10 -1.46 2.68 -91.23 -0.24 -1.71 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 C 0.18 3.32 5.67 -6.89 -0.04 3.29 16 30 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 32 H 0.08 2.08 5.74 -51.93 -0.30 1.78 16 33 H 0.05 0.81 6.77 -51.93 -0.35 0.46 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.08 1.11 7.93 -51.93 -0.41 0.70 16 37 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.33 7.89 -51.93 -0.41 -0.08 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.42 4.81 8.18 -40.82 -0.33 4.48 16 44 H 0.08 0.97 7.83 -51.93 -0.41 0.57 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.01 0.26 7.78 -51.93 -0.40 -0.14 16 47 H 0.02 0.49 8.14 -51.92 -0.42 0.06 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -32.50 365.78 -9.62 -42.12 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.65 Total: 0.98 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -1.89 Total: 6.54 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.74 Total: -54.33 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: 0.18 Total: -16.73 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.04 Total: 15.90 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.50 -9.62 -42.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088137914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.397 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds