Wall clock time and date at job start Fri Apr 10 2020 18:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99933 * 2 1 4 4 H 1.48499 * 109.47465 * 90.00236 * 3 2 1 5 5 H 1.48507 * 109.47212 * 210.00452 * 3 2 1 6 6 H 1.48505 * 109.47356 * 330.00331 * 3 2 1 7 7 C 1.38811 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99964 * 325.94229 * 7 2 1 9 9 N 1.36944 * 119.99773 * 145.93647 * 7 2 1 10 10 C 1.47196 * 121.32780 * 331.27936 * 9 7 2 11 11 C 1.52852 * 107.17343 * 239.54298 * 10 9 7 12 12 C 1.53069 * 109.93857 * 300.38338 * 11 10 9 13 13 H 1.09000 * 113.06914 * 289.17410 * 12 11 10 14 14 C 1.55917 * 106.17303 * 164.87445 * 12 11 10 15 15 N 1.47639 * 104.41575 * 283.25855 * 14 12 11 16 16 C 1.34775 * 125.72904 * 155.06289 * 15 14 12 17 17 O 1.21280 * 120.00515 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99925 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.47573 * 180.02562 * 18 16 15 20 20 H 1.09002 * 110.21692 * 55.47090 * 19 18 16 21 21 C 1.54481 * 110.24996 * 177.49931 * 19 18 16 22 22 C 1.54632 * 101.76420 * 144.41352 * 21 19 18 23 23 C 1.51279 * 104.19429 * 335.20325 * 22 21 19 24 24 O 1.21287 * 124.93991 * 196.23165 * 23 22 21 25 25 N 1.34420 * 110.11977 * 16.25085 * 23 22 21 26 26 C 1.46116 * 108.37573 * 335.95154 * 15 14 12 27 27 C 1.53326 * 107.12915 * 359.12262 * 26 15 14 28 28 H 1.08997 * 108.90567 * 270.11919 * 27 26 15 29 29 C 1.46724 * 121.31990 * 151.56243 * 9 7 2 30 30 H 0.97003 * 119.99893 * 175.03450 * 1 2 3 31 31 H 1.09005 * 109.79323 * 357.53653 * 10 9 7 32 32 H 1.09002 * 109.78895 * 118.38159 * 10 9 7 33 33 H 1.09003 * 108.45276 * 181.04177 * 11 10 9 34 34 H 1.08996 * 110.79825 * 61.19172 * 11 10 9 35 35 H 1.09004 * 110.44189 * 41.99472 * 14 12 11 36 36 H 1.09002 * 110.44390 * 164.39792 * 14 12 11 37 37 H 1.08998 * 109.47277 * 299.99913 * 18 16 15 38 38 H 1.09002 * 109.47495 * 59.99875 * 18 16 15 39 39 H 1.08996 * 110.96421 * 262.53522 * 21 19 18 40 40 H 1.09001 * 110.96723 * 26.29719 * 21 19 18 41 41 H 1.08993 * 110.48615 * 216.52375 * 22 21 19 42 42 H 1.09004 * 110.59318 * 93.93536 * 22 21 19 43 43 H 0.97003 * 124.34995 * 180.42654 * 25 23 22 44 44 H 1.09001 * 109.10256 * 240.00560 * 26 15 14 45 45 H 1.09004 * 110.35449 * 118.93638 * 26 15 14 46 46 H 1.08994 * 109.15825 * 248.08555 * 29 9 7 47 47 H 1.08999 * 109.16186 * 7.32836 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5477 1.4402 -0.7002 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.6092 -2.0574 0.5229 9 7 3.2035 -1.3035 -0.6649 10 6 3.4952 -0.4736 -1.8451 11 6 3.7599 -1.4252 -3.0116 12 6 4.9458 -2.3357 -2.6837 13 1 5.9005 -1.8096 -2.6814 14 6 4.8982 -3.5006 -3.7190 15 7 3.8152 -4.3792 -3.2342 16 6 3.0886 -5.2243 -3.9920 17 8 3.3031 -5.3081 -5.1827 18 6 2.0096 -6.0651 -3.3597 19 6 1.3431 -6.9300 -4.4315 20 1 2.0913 -7.5274 -4.9525 21 6 0.2757 -7.8456 -3.7922 22 6 -0.8095 -7.8813 -4.8932 23 6 -0.5959 -6.5986 -5.6663 24 8 -1.3993 -6.1054 -6.4293 25 7 0.6141 -6.0851 -5.3848 26 6 3.6521 -4.1601 -1.7987 27 6 4.6949 -3.1170 -1.3798 28 1 5.6127 -3.6304 -1.0934 29 6 4.2395 -2.2480 -0.2321 30 1 -0.4850 -0.8369 -0.0727 31 1 2.6296 0.1438 -2.0853 32 1 4.3585 0.1613 -1.6455 33 1 3.9971 -0.8313 -3.8943 34 1 2.8829 -2.0387 -3.2173 35 1 4.6624 -3.1180 -4.7120 36 1 5.8476 -4.0360 -3.7337 37 1 2.4496 -6.7075 -2.5970 38 1 1.2641 -5.4152 -2.9015 39 1 0.6768 -8.8421 -3.6073 40 1 -0.1147 -7.4073 -2.8737 41 1 -1.8042 -7.8973 -4.4480 42 1 -0.6690 -8.7458 -5.5422 43 1 0.9607 -5.2619 -5.7629 44 1 3.8292 -5.0981 -1.2724 45 1 2.6486 -3.7933 -1.5827 46 1 5.0925 -1.6907 0.1549 47 1 3.8380 -2.8821 0.5583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088137915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:23 Heat of formation + Delta-G solvation = -69.221253 kcal Electronic energy + Delta-G solvation = -28456.128127 eV Core-core repulsion = 24638.043447 eV Total energy + Delta-G solvation = -3818.084679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.85926 -41.17782 -39.65787 -37.67052 -37.00022 -34.43646 -33.11207 -32.47965 -32.17817 -31.73309 -29.06433 -27.31724 -26.34419 -24.61400 -23.68397 -22.82742 -22.22022 -21.56177 -20.42113 -20.04729 -19.23460 -18.40160 -17.86165 -17.70354 -17.11479 -16.71685 -16.44462 -16.00240 -15.78533 -15.55087 -15.36754 -14.93924 -14.77964 -14.59700 -14.37958 -14.08730 -13.91548 -13.87008 -13.46418 -13.41628 -13.29008 -13.06549 -12.96973 -12.75170 -12.45364 -12.39705 -12.23460 -11.96920 -11.90201 -11.66994 -11.28111 -11.13006 -11.05662 -10.99570 -10.88083 -10.42006 -10.17995 -9.63675 -8.95565 -8.52473 -5.38668 1.52269 1.53659 1.54020 1.57958 1.75389 2.00093 2.38639 2.63671 3.01688 3.24985 3.45735 3.48650 3.51703 3.60193 3.75312 3.84758 3.87592 4.16177 4.23910 4.30008 4.34893 4.39079 4.47347 4.50130 4.53973 4.64880 4.67979 4.76424 4.80540 4.84654 4.90237 4.98555 5.00778 5.05960 5.06740 5.14079 5.19936 5.20577 5.26941 5.32648 5.55883 5.76144 5.89752 6.03171 6.32066 6.50803 6.94731 7.06245 7.15950 7.69188 8.20773 8.86001 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013748 B = 0.003832 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.219676 B = 7305.001821 C = 8349.374217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.054 4.054 3 Si 1.061 2.939 4 H -0.298 1.298 5 H -0.232 1.232 6 H -0.309 1.309 7 C -0.331 4.331 8 H 0.034 0.966 9 N -0.612 5.612 10 C 0.138 3.862 11 C -0.121 4.121 12 C -0.081 4.081 13 H 0.122 0.878 14 C 0.107 3.893 15 N -0.611 5.611 16 C 0.520 3.480 17 O -0.582 6.582 18 C -0.143 4.143 19 C 0.144 3.856 20 H 0.095 0.905 21 C -0.116 4.116 22 C -0.146 4.146 23 C 0.499 3.501 24 O -0.601 6.601 25 N -0.723 5.723 26 C 0.114 3.886 27 C -0.102 4.102 28 H 0.109 0.891 29 C 0.151 3.849 30 H 0.250 0.750 31 H 0.030 0.970 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.034 0.966 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.145 0.855 38 H 0.092 0.908 39 H 0.132 0.868 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.126 0.874 43 H 0.401 0.599 44 H 0.091 0.909 45 H 0.045 0.955 46 H 0.042 0.958 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.361 -17.385 -3.491 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.251 4.251 3 Si 0.887 3.113 4 H -0.226 1.226 5 H -0.156 1.156 6 H -0.237 1.237 7 C -0.461 4.461 8 H 0.052 0.948 9 N -0.337 5.337 10 C 0.013 3.987 11 C -0.160 4.160 12 C -0.100 4.100 13 H 0.140 0.860 14 C -0.015 4.015 15 N -0.343 5.343 16 C 0.310 3.690 17 O -0.463 6.463 18 C -0.183 4.183 19 C 0.040 3.960 20 H 0.113 0.887 21 C -0.153 4.153 22 C -0.186 4.186 23 C 0.288 3.712 24 O -0.482 6.482 25 N -0.376 5.376 26 C -0.009 4.009 27 C -0.122 4.122 28 H 0.128 0.872 29 C 0.026 3.974 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.163 0.837 38 H 0.111 0.889 39 H 0.150 0.850 40 H 0.112 0.888 41 H 0.129 0.871 42 H 0.144 0.856 43 H 0.238 0.762 44 H 0.109 0.891 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.807 -15.763 -4.383 20.177 hybrid contribution -0.550 -0.635 -0.208 0.865 sum 11.258 -16.398 -4.591 20.413 Atomic orbital electron populations 1.71014 1.08291 1.28760 1.50548 1.27097 0.95858 1.04177 0.97965 0.84058 0.76918 0.73441 0.76893 1.22573 1.15597 1.23700 1.19851 0.97295 0.96021 1.32904 0.94818 1.44392 1.15117 1.44793 1.29413 1.21429 0.98031 0.92729 0.86535 1.21906 0.97758 0.98162 0.98214 1.22394 0.99206 0.94670 0.93732 0.85960 1.22635 0.90423 0.90772 0.97688 1.48415 1.35533 1.40265 1.10125 1.20824 0.82066 0.79999 0.86092 1.90679 1.70288 1.69074 1.16251 1.22129 0.96588 0.99397 1.00141 1.21690 0.94868 0.90979 0.88512 0.88671 1.22803 0.93086 1.01891 0.97539 1.22396 1.02842 0.94894 0.98484 1.21884 0.80722 0.87640 0.80969 1.90709 1.49187 1.67893 1.40461 1.46658 1.17320 1.26991 1.46609 1.21709 0.99877 0.99501 0.79779 1.21813 0.98918 0.95655 0.95808 0.87249 1.20460 0.91143 0.91355 0.94474 0.94071 0.95108 0.92746 0.91719 0.94710 0.92218 0.89488 0.83745 0.88948 0.85016 0.88827 0.87077 0.85595 0.76191 0.89102 0.93658 0.93976 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.83 13.70 21.65 0.30 -58.53 16 2 C -0.05 -3.04 4.92 84.86 0.42 -2.62 16 3 Si 1.06 49.87 26.89 68.60 1.84 51.71 16 4 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 5 H -0.23 -9.32 4.71 99.48 0.47 -8.85 16 6 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 7 C -0.33 -17.47 9.78 84.03 0.82 -16.65 16 8 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 9 N -0.61 -25.69 2.56 -703.75 -1.80 -27.49 16 10 C 0.14 5.32 4.29 86.20 0.37 5.69 16 11 C -0.12 -3.87 4.98 30.57 0.15 -3.72 16 12 C -0.08 -1.91 3.68 -9.40 -0.03 -1.94 16 13 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 14 C 0.11 2.47 6.18 87.17 0.54 3.01 16 15 N -0.61 -15.06 2.84 -813.44 -2.31 -17.37 16 16 C 0.52 13.27 7.66 87.66 0.67 13.94 16 17 O -0.58 -18.36 15.13 -3.03 -0.05 -18.41 16 18 C -0.14 -2.56 4.52 29.85 0.13 -2.42 16 19 C 0.14 2.46 3.02 45.44 0.14 2.60 16 20 H 0.10 1.55 7.99 -2.39 -0.02 1.53 16 21 C -0.12 -1.17 6.69 31.65 0.21 -0.96 16 22 C -0.15 -2.21 6.86 30.59 0.21 -2.00 16 23 C 0.50 13.80 8.43 87.90 0.74 14.54 16 24 O -0.60 -22.99 18.03 -3.05 -0.05 -23.05 16 25 N -0.72 -18.58 5.60 -439.43 -2.46 -21.03 16 26 C 0.11 2.73 5.34 86.56 0.46 3.20 16 27 C -0.10 -2.37 2.77 -10.98 -0.03 -2.40 16 28 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 29 C 0.15 4.74 5.86 85.68 0.50 5.24 16 30 H 0.25 15.71 8.73 -92.71 -0.81 14.90 16 31 H 0.03 1.37 5.57 -2.38 -0.01 1.36 16 32 H 0.05 1.93 6.90 -2.39 -0.02 1.91 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 34 H 0.03 1.31 7.09 -2.39 -0.02 1.29 16 35 H 0.06 1.58 7.87 -2.39 -0.02 1.56 16 36 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 39 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.09 0.89 7.91 -2.39 -0.02 0.88 16 41 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.13 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.40 12.18 7.89 -92.71 -0.73 11.45 16 44 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.04 1.46 7.90 -2.38 -0.02 1.44 16 46 H 0.04 1.22 8.14 -2.39 -0.02 1.21 16 47 H 0.05 1.75 7.93 -2.39 -0.02 1.73 16 Total: -1.00 -78.93 362.05 0.74 -78.19 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -0.04 Total: 20.48 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: 5.31 Total: 15.50 kcal Atomic # 7 Polarization: -118.15 SS G_CDS: -6.27 Total: -124.43 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -0.10 Total: -41.45 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 1.84 Total: 51.71 kcal Total: -78.93 0.74 -78.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088137915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.966 kcal (2) G-P(sol) polarization free energy of solvation -78.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds