Wall clock time and date at job start Fri Apr 10 2020 18:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34488 * 125.56743 * 2 1 4 4 C 1.46679 * 106.33065 * 179.97438 * 3 2 1 5 5 C 1.47272 * 126.94471 * 179.97438 * 4 3 2 6 6 O 1.21621 * 120.00001 * 180.02562 * 5 4 3 7 7 N 1.34772 * 119.99300 * 0.03119 * 5 4 3 8 8 C 1.46505 * 119.99748 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.44614 * 324.96268 * 8 7 5 10 10 C 1.53040 * 109.45948 * 84.92701 * 8 7 5 11 11 C 1.53197 * 109.30928 * 181.38799 * 10 8 7 12 12 N 1.46924 * 108.77794 * 305.36147 * 11 10 8 13 13 C 1.36930 * 120.63656 * 233.88935 * 12 11 10 14 14 H 1.07996 * 120.00860 * 151.58822 * 13 12 11 15 15 C 1.38815 * 119.99653 * 331.58373 * 13 12 11 16 16 N 1.31621 * 119.99984 * 343.18307 * 15 13 12 17 17 Si 1.86800 * 120.00122 * 163.17986 * 15 13 12 18 18 H 1.48504 * 109.47115 * 90.00059 * 17 15 13 19 19 H 1.48500 * 109.47480 * 210.00260 * 17 15 13 20 20 H 1.48499 * 109.47007 * 330.00291 * 17 15 13 21 21 C 1.46930 * 118.73262 * 53.61045 * 12 11 10 22 22 C 1.53041 * 109.46076 * 204.99786 * 8 7 5 23 23 H 1.09003 * 109.52270 * 298.57828 * 22 8 7 24 24 O 1.42894 * 109.49530 * 58.65887 * 22 8 7 25 25 C 1.36776 * 106.11851 * 0.24186 * 4 3 2 26 26 C 1.50700 * 125.80401 * 179.71683 * 25 4 3 27 27 N 1.34657 * 108.39083 * 359.60891 * 25 4 3 28 28 C 1.46500 * 124.84928 * 180.13489 * 27 25 4 29 29 H 1.09001 * 109.46786 * 90.02723 * 1 2 3 30 30 H 1.09004 * 109.46474 * 210.01998 * 1 2 3 31 31 H 1.08997 * 109.47229 * 330.02143 * 1 2 3 32 32 H 1.07998 * 126.83405 * 359.95866 * 3 2 1 33 33 H 0.96993 * 120.00620 * 359.97438 * 7 5 4 34 34 H 1.08999 * 109.49841 * 301.33393 * 10 8 7 35 35 H 1.08998 * 109.49957 * 61.40476 * 10 8 7 36 36 H 1.09002 * 109.58501 * 185.57979 * 11 10 8 37 37 H 1.09004 * 109.58784 * 65.15551 * 11 10 8 38 38 H 0.97002 * 120.00123 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.58909 * 66.18183 * 21 12 11 40 40 H 1.09002 * 109.58437 * 186.46255 * 21 12 11 41 41 H 0.96707 * 113.99549 * 179.83607 * 24 22 8 42 42 H 1.09003 * 109.46434 * 90.02386 * 26 25 4 43 43 H 1.08993 * 109.47065 * 210.02809 * 26 25 4 44 44 H 1.09000 * 109.47059 * 330.03146 * 26 25 4 45 45 H 1.09003 * 109.47222 * 270.28755 * 28 27 25 46 46 H 1.09003 * 109.47124 * 30.28448 * 28 27 25 47 47 H 1.08999 * 109.47094 * 150.28400 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0940 0.0000 4 6 3.6742 0.6107 0.0006 5 6 4.8977 1.4304 0.0003 6 8 5.9892 0.8938 0.0005 7 7 4.8078 2.7751 0.0000 8 6 6.0249 3.5906 0.0003 9 1 6.7946 3.0936 0.5908 10 6 6.5200 3.7681 -1.4369 11 6 7.8116 4.5919 -1.4296 12 7 7.5645 5.8525 -0.7166 13 6 7.8469 7.0552 -1.3071 14 1 7.2852 7.9362 -1.0339 15 6 8.8553 7.1421 -2.2571 16 7 9.7498 6.1817 -2.3571 17 14 8.9429 8.6219 -3.3937 18 1 9.7810 9.6768 -2.7692 19 1 9.5428 8.2158 -4.6900 20 1 7.5743 9.1497 -3.6254 21 6 7.0028 5.7983 0.6401 22 6 5.7203 4.9610 0.6097 23 1 4.9683 5.4691 0.0060 24 8 5.2291 4.7924 1.9409 25 6 3.5998 -0.7550 -0.0046 26 6 4.7722 -1.7018 -0.0121 27 7 2.3008 -1.1098 0.0005 28 6 1.8100 -2.4901 0.0002 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3632 -0.8899 0.5142 31 1 -0.3633 0.8901 0.5135 32 1 1.9628 2.1234 -0.0006 33 1 3.9374 3.2030 -0.0004 34 1 6.7146 2.7905 -1.8780 35 1 5.7605 4.2866 -2.0219 36 1 8.1146 4.8053 -2.4547 37 1 8.5985 4.0334 -0.9226 38 1 10.4547 6.2425 -3.0207 39 1 7.7237 5.3382 1.3159 40 1 6.7745 6.8079 0.9816 41 1 5.0172 5.6222 2.3900 42 1 5.0578 -1.9344 1.0138 43 1 4.4943 -2.6202 -0.5291 44 1 5.6126 -1.2354 -0.5263 45 1 1.6885 -2.8323 -1.0276 46 1 2.5267 -3.1307 0.5141 47 1 0.8496 -2.5343 0.5138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090795888.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:35 Heat of formation + Delta-G solvation = -47.543172 kcal Electronic energy + Delta-G solvation = -27702.138555 eV Core-core repulsion = 23884.993908 eV Total energy + Delta-G solvation = -3817.144647 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.39602 -40.73722 -39.17364 -36.97183 -35.69658 -34.04043 -33.56217 -33.47730 -31.68610 -30.24541 -29.95464 -27.86727 -26.70188 -25.67828 -24.11564 -23.66983 -22.55745 -21.31438 -20.85676 -19.73813 -18.83146 -18.01068 -17.92639 -17.21680 -16.71674 -16.67096 -16.51547 -15.70864 -15.60262 -15.54586 -15.12422 -14.91554 -14.57685 -14.35740 -14.12905 -14.03886 -13.86426 -13.80665 -13.56375 -13.45163 -13.26669 -13.14808 -12.97133 -12.96173 -12.70376 -12.52563 -12.37843 -12.32338 -12.10082 -12.05927 -11.87186 -11.35776 -11.08777 -10.77142 -10.55404 -10.00723 -9.48686 -8.92321 -8.75511 -7.89615 -5.37716 0.76540 1.45170 1.48430 1.50323 1.60178 1.85999 2.43757 2.49883 2.61027 3.14497 3.28031 3.64016 3.82178 3.86765 3.89581 3.96184 4.08223 4.18786 4.23241 4.32599 4.39766 4.40397 4.53224 4.55433 4.64261 4.69563 4.71748 4.74996 4.85241 4.85765 4.92343 4.97077 5.03377 5.07328 5.12427 5.16360 5.34107 5.37843 5.58897 5.61318 5.65524 5.84596 6.13586 6.34461 6.38697 6.75052 6.90192 7.09877 7.42979 7.77993 8.31810 9.18067 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021952 B = 0.002791 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.193990 B =10029.757897 C =10297.268927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.014 3.986 3 C -0.185 4.185 4 C -0.265 4.265 5 C 0.582 3.418 6 O -0.595 6.595 7 N -0.701 5.701 8 C 0.173 3.827 9 H 0.052 0.948 10 C -0.128 4.128 11 C 0.182 3.818 12 N -0.603 5.603 13 C -0.266 4.266 14 H 0.077 0.923 15 C -0.052 4.052 16 N -0.937 5.937 17 Si 0.973 3.027 18 H -0.284 1.284 19 H -0.295 1.295 20 H -0.265 1.265 21 C 0.119 3.881 22 C 0.103 3.897 23 H 0.072 0.928 24 O -0.571 6.571 25 C 0.091 3.909 26 C -0.088 4.088 27 N -0.438 5.438 28 C 0.056 3.944 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.155 0.845 33 H 0.408 0.592 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.063 0.937 37 H -0.009 1.009 38 H 0.251 0.749 39 H 0.011 0.989 40 H 0.077 0.923 41 H 0.395 0.605 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.095 0.905 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.316 -15.186 5.615 28.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 C -0.208 4.208 4 C -0.275 4.275 5 C 0.373 3.627 6 O -0.478 6.478 7 N -0.351 5.351 8 C 0.068 3.932 9 H 0.071 0.929 10 C -0.168 4.168 11 C 0.056 3.944 12 N -0.328 5.328 13 C -0.396 4.396 14 H 0.095 0.905 15 C -0.247 4.247 16 N -0.583 5.583 17 Si 0.800 3.200 18 H -0.210 1.210 19 H -0.222 1.222 20 H -0.190 1.190 21 C -0.008 4.008 22 C 0.042 3.958 23 H 0.090 0.910 24 O -0.378 6.378 25 C -0.027 4.027 26 C -0.145 4.145 27 N -0.114 5.114 28 C -0.084 4.084 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.173 0.827 33 H 0.244 0.756 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.009 0.991 38 H 0.060 0.940 39 H 0.029 0.971 40 H 0.096 0.904 41 H 0.245 0.755 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.090 0.910 45 H 0.107 0.893 46 H 0.114 0.886 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -22.518 -16.504 5.399 28.435 hybrid contribution 0.674 1.554 -0.511 1.769 sum -21.844 -14.950 4.887 26.917 Atomic orbital electron populations 1.20436 0.84842 1.04603 1.03710 1.20774 0.95172 0.84954 1.08555 1.21989 0.89942 0.99019 1.09886 1.20161 0.92990 0.93115 1.21216 1.17854 0.88195 0.82065 0.74631 1.90692 1.30426 1.73094 1.53609 1.45606 1.09383 1.05377 1.74702 1.20592 0.87028 0.90020 0.95606 0.92941 1.22320 0.99318 0.99460 0.95710 1.20525 0.91593 0.84909 0.97398 1.44232 1.74109 1.02495 1.11963 1.19563 1.12248 0.88404 1.19381 0.90520 1.25926 0.94916 1.00675 1.03206 1.70213 1.15314 1.36218 1.36526 0.85207 0.78098 0.78820 0.77874 1.21033 1.22153 1.18972 1.21688 0.93333 0.98963 0.86816 1.22304 0.95827 0.94013 0.83666 0.91005 1.86479 1.86671 1.37113 1.27512 1.20451 0.86100 0.93846 1.02272 1.20482 0.93498 0.97103 1.03426 1.43714 1.04094 1.08130 1.55511 1.22434 1.02793 0.78226 1.04925 0.89976 0.89904 0.89179 0.82738 0.75591 0.92760 0.91430 0.91869 0.99092 0.94014 0.97077 0.90440 0.75480 0.90339 0.89038 0.91014 0.89341 0.88594 0.87250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.06 71.24 0.72 0.00 16 2 C 0.01 0.25 6.85 40.98 0.28 0.53 16 3 C -0.18 -4.34 10.45 23.62 0.25 -4.10 16 4 C -0.26 -8.04 6.29 -19.04 -0.12 -8.16 16 5 C 0.58 21.71 7.77 86.62 0.67 22.38 16 6 O -0.60 -26.45 14.48 -4.10 -0.06 -26.51 16 7 N -0.70 -24.12 4.91 -445.82 -2.19 -26.31 16 8 C 0.17 6.86 2.12 45.02 0.10 6.95 16 9 H 0.05 2.45 7.58 -2.39 -0.02 2.44 16 10 C -0.13 -5.52 5.65 30.67 0.17 -5.35 16 11 C 0.18 9.49 5.31 86.36 0.46 9.94 16 12 N -0.60 -30.94 2.99 -699.08 -2.09 -33.03 16 13 C -0.27 -14.54 9.58 84.04 0.81 -13.73 16 14 H 0.08 3.95 7.88 -2.91 -0.02 3.93 16 15 C -0.05 -2.91 4.92 84.86 0.42 -2.49 16 16 N -0.94 -56.78 11.20 21.65 0.24 -56.54 16 17 Si 0.97 44.72 29.59 68.60 2.03 46.75 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 C 0.12 4.98 6.14 86.36 0.53 5.51 16 22 C 0.10 3.62 3.14 30.67 0.10 3.71 16 23 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 24 O -0.57 -17.19 13.16 -148.98 -1.96 -19.15 16 25 C 0.09 2.34 6.89 41.78 0.29 2.63 16 26 C -0.09 -2.01 9.26 71.24 0.66 -1.35 16 27 N -0.44 -7.98 3.09 -518.61 -1.60 -9.58 16 28 C 0.06 0.45 10.39 127.77 1.33 1.78 16 29 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 0.43 6.94 -2.38 -0.02 0.41 16 31 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.16 3.04 7.70 -2.91 -0.02 3.02 16 33 H 0.41 11.68 7.72 -92.71 -0.72 10.96 16 34 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.06 3.64 6.06 -2.39 -0.01 3.62 16 37 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 38 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 39 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.08 2.94 7.93 -2.39 -0.02 2.92 16 41 H 0.40 7.97 9.08 -74.05 -0.67 7.29 16 42 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.09 1.42 7.59 -2.39 -0.02 1.40 16 44 H 0.07 2.14 6.47 -2.39 -0.02 2.13 16 45 H 0.09 0.50 8.14 -2.39 -0.02 0.49 16 46 H 0.10 0.59 7.51 -2.39 -0.02 0.57 16 47 H 0.11 0.36 6.90 -2.39 -0.02 0.35 16 Total: -1.00 -78.80 376.52 0.62 -78.18 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: -0.39 Total: 27.93 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: 6.65 Total: 18.26 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -5.64 Total: -125.46 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -2.02 Total: -45.65 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -78.80 0.62 -78.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090795888.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.635 kcal (2) G-P(sol) polarization free energy of solvation -78.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds