Wall clock time and date at job start Fri Apr 10 2020 18:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34486 * 125.57294 * 2 1 4 4 C 1.46689 * 106.33383 * 179.86400 * 3 2 1 5 5 C 1.47260 * 126.94690 * 180.13295 * 4 3 2 6 6 O 1.21625 * 120.00536 * 180.31624 * 5 4 3 7 7 N 1.34782 * 119.99518 * 0.31246 * 5 4 3 8 8 C 1.46503 * 119.99681 * 179.97438 * 7 5 4 9 9 H 1.09005 * 109.45719 * 34.97582 * 8 7 5 10 10 C 1.53041 * 109.46059 * 275.00329 * 8 7 5 11 11 C 1.53188 * 109.31196 * 178.61584 * 10 8 7 12 12 N 1.46931 * 108.77637 * 54.63059 * 11 10 8 13 13 C 1.36941 * 120.63004 * 126.36920 * 12 11 10 14 14 H 1.07999 * 120.00069 * 332.63664 * 13 12 11 15 15 C 1.38810 * 120.00018 * 152.62822 * 13 12 11 16 16 N 1.31624 * 119.99845 * 159.36862 * 15 13 12 17 17 Si 1.86800 * 120.00261 * 339.37445 * 15 13 12 18 18 H 1.48498 * 109.47240 * 92.92445 * 17 15 13 19 19 H 1.48496 * 109.47018 * 212.92845 * 17 15 13 20 20 H 1.48498 * 109.46731 * 332.92909 * 17 15 13 21 21 C 1.46922 * 118.74024 * 306.39447 * 12 11 10 22 22 C 1.53038 * 109.45963 * 154.93009 * 8 7 5 23 23 H 1.08997 * 109.50014 * 301.34009 * 22 8 7 24 24 O 1.42901 * 109.49419 * 61.43559 * 22 8 7 25 25 C 1.36772 * 106.11133 * 0.39201 * 4 3 2 26 26 C 1.50703 * 125.79738 * 179.75953 * 25 4 3 27 27 N 1.34657 * 108.40115 * 359.76251 * 25 4 3 28 28 C 1.46496 * 124.85289 * 180.02562 * 27 25 4 29 29 H 1.09000 * 109.47234 * 269.69656 * 1 2 3 30 30 H 1.09003 * 109.47198 * 29.69393 * 1 2 3 31 31 H 1.08992 * 109.47616 * 149.69526 * 1 2 3 32 32 H 1.08001 * 126.83833 * 359.97438 * 3 2 1 33 33 H 0.96993 * 120.00554 * 0.02562 * 7 5 4 34 34 H 1.08999 * 109.49387 * 298.56033 * 10 8 7 35 35 H 1.08998 * 109.50019 * 58.63193 * 10 8 7 36 36 H 1.08996 * 109.59003 * 174.41651 * 11 10 8 37 37 H 1.09003 * 109.59094 * 294.70302 * 11 10 8 38 38 H 0.97003 * 119.99637 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.58639 * 173.39779 * 21 12 11 40 40 H 1.08999 * 109.58587 * 293.81780 * 21 12 11 41 41 H 0.96702 * 114.00432 * 179.97438 * 24 22 8 42 42 H 1.09003 * 109.47116 * 269.99814 * 26 25 4 43 43 H 1.08996 * 109.47257 * 30.00480 * 26 25 4 44 44 H 1.08999 * 109.46971 * 150.00161 * 26 25 4 45 45 H 1.08996 * 109.47299 * 270.00039 * 28 27 25 46 46 H 1.09006 * 109.47052 * 30.00352 * 28 27 25 47 47 H 1.09003 * 109.46796 * 149.99854 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2893 1.0939 0.0000 4 6 3.6743 0.6105 0.0033 5 6 4.8978 1.4300 0.0073 6 8 5.9892 0.8934 0.0040 7 7 4.8080 2.7748 0.0145 8 6 6.0252 3.5902 0.0190 9 1 6.7956 3.0957 -0.5727 10 6 6.5187 3.7616 1.4575 11 6 7.8102 4.5853 1.4552 12 7 7.5641 5.8489 0.7469 13 6 7.8507 7.0490 1.3409 14 1 7.8311 7.1372 2.4171 15 6 8.1668 8.1521 0.5598 16 7 8.0457 9.3656 1.0550 17 14 8.7638 7.9144 -1.1942 18 1 7.6072 7.9770 -2.1235 19 1 9.7327 8.9863 -1.5368 20 1 9.4259 6.5909 -1.3165 21 6 7.0039 5.8004 -0.6105 22 6 5.7214 4.9631 -0.5851 23 1 5.3479 4.8388 -1.6014 24 8 4.7349 5.6256 0.2086 25 6 3.5997 -0.7551 -0.0039 26 6 4.7721 -1.7020 -0.0089 27 7 2.3007 -1.1099 -0.0058 28 6 1.8098 -2.4901 -0.0127 29 1 -0.3634 -0.0054 1.0276 30 1 -0.3634 0.8927 -0.5091 31 1 -0.3634 -0.8871 -0.5185 32 1 1.9629 2.1234 -0.0004 33 1 3.9376 3.2028 0.0175 34 1 5.7587 4.2784 2.0436 35 1 6.7121 2.7822 1.8950 36 1 8.1121 4.7946 2.4814 37 1 8.5984 4.0279 0.9490 38 1 8.2669 10.1364 0.5093 39 1 6.7738 6.8113 -0.9471 40 1 7.7255 5.3431 -1.2874 41 1 4.4935 6.5038 -0.1163 42 1 5.0548 -1.9248 -1.0378 43 1 5.6139 -1.2407 0.5074 44 1 4.4956 -2.6254 0.5000 45 1 1.6882 -2.8275 -1.0419 46 1 2.5265 -3.1332 0.4983 47 1 0.8494 -2.5367 0.5008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090795889.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:37 Heat of formation + Delta-G solvation = -40.691274 kcal Electronic energy + Delta-G solvation = -27915.252548 eV Core-core repulsion = 24098.405021 eV Total energy + Delta-G solvation = -3816.847527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.40018 -40.82872 -39.33293 -36.61142 -35.69176 -34.15987 -33.65542 -33.53352 -31.76713 -30.89033 -29.98367 -27.88337 -26.59624 -25.65770 -24.57356 -23.54508 -22.60389 -21.19392 -20.92353 -19.78122 -19.11317 -17.94136 -17.72714 -17.26040 -16.73190 -16.64243 -16.52982 -16.01415 -15.69638 -15.65240 -15.27925 -14.86139 -14.69017 -14.36869 -14.19810 -14.13010 -14.02650 -13.95126 -13.82121 -13.49538 -13.32796 -13.12295 -13.04015 -12.98191 -12.66152 -12.52781 -12.41771 -12.32753 -12.16792 -11.97606 -11.85026 -11.37110 -10.92246 -10.87416 -10.58741 -10.01139 -9.49655 -8.93397 -8.91390 -8.13987 -5.45664 0.76418 1.27893 1.43649 1.43925 1.52291 1.85710 2.41710 2.42162 2.59874 3.01697 3.30187 3.40774 3.74432 3.82332 3.88750 3.94721 3.96553 4.13526 4.16373 4.26516 4.35070 4.39954 4.53026 4.54594 4.62941 4.65977 4.72069 4.73347 4.73694 4.75385 4.82356 4.82782 4.93598 5.00311 5.03785 5.09139 5.14478 5.33214 5.43765 5.59410 5.84598 5.86610 6.13347 6.14211 6.37796 6.74753 6.83272 6.94319 7.40331 7.61483 8.02299 9.06027 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.026675 B = 0.002926 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.409697 B = 9567.267485 C =10012.185824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.012 3.988 3 C -0.186 4.186 4 C -0.267 4.267 5 C 0.584 3.416 6 O -0.589 6.589 7 N -0.707 5.707 8 C 0.169 3.831 9 H 0.084 0.916 10 C -0.122 4.122 11 C 0.149 3.851 12 N -0.608 5.608 13 C -0.242 4.242 14 H 0.047 0.953 15 C -0.032 4.032 16 N -0.956 5.956 17 Si 0.944 3.056 18 H -0.266 1.266 19 H -0.313 1.313 20 H -0.266 1.266 21 C 0.091 3.909 22 C 0.095 3.905 23 H 0.080 0.920 24 O -0.561 6.561 25 C 0.095 3.905 26 C -0.088 4.088 27 N -0.439 5.439 28 C 0.056 3.944 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.151 0.849 33 H 0.410 0.590 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.034 0.966 38 H 0.262 0.738 39 H 0.068 0.932 40 H 0.042 0.958 41 H 0.388 0.612 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.455 -25.355 -6.160 31.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 C -0.209 4.209 4 C -0.277 4.277 5 C 0.375 3.625 6 O -0.472 6.472 7 N -0.356 5.356 8 C 0.064 3.936 9 H 0.101 0.899 10 C -0.162 4.162 11 C 0.023 3.977 12 N -0.332 5.332 13 C -0.371 4.371 14 H 0.065 0.935 15 C -0.227 4.227 16 N -0.602 5.602 17 Si 0.773 3.227 18 H -0.192 1.192 19 H -0.242 1.242 20 H -0.190 1.190 21 C -0.035 4.035 22 C 0.033 3.967 23 H 0.097 0.903 24 O -0.368 6.368 25 C -0.024 4.024 26 C -0.145 4.145 27 N -0.115 5.115 28 C -0.084 4.084 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.169 0.831 33 H 0.246 0.754 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.236 0.764 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.116 0.884 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.796 -26.458 -5.831 32.415 hybrid contribution 0.431 1.503 -0.772 1.744 sum -17.365 -24.955 -6.603 31.111 Atomic orbital electron populations 1.20420 0.85091 1.04551 1.03650 1.20742 0.95094 0.85047 1.08723 1.21995 0.90310 0.98854 1.09774 1.20159 0.92966 0.93102 1.21459 1.17772 0.88147 0.81888 0.74662 1.90683 1.30001 1.72973 1.53510 1.45729 1.09787 1.05314 1.74811 1.20701 0.87318 0.88740 0.96866 0.89852 1.22087 0.98374 0.99060 0.96716 1.21002 0.94624 0.85601 0.96472 1.44265 1.72484 1.02006 1.14410 1.18791 1.39995 0.86593 0.91739 0.93491 1.25844 1.00322 0.94633 1.01909 1.69975 1.52698 0.98219 1.39337 0.85956 0.78442 0.76767 0.81537 1.19231 1.24159 1.19027 1.22168 0.94659 0.99495 0.87141 1.22399 0.89031 0.91221 0.94031 0.90256 1.86381 1.58685 1.35250 1.56452 1.20492 0.86053 0.93864 1.01959 1.20509 0.93425 0.97004 1.03548 1.43728 1.04235 1.08044 1.55492 1.22430 1.02707 0.78298 1.04946 0.90046 0.89322 0.89956 0.83101 0.75428 0.92346 0.92131 0.92491 0.94808 0.92931 0.91421 0.94071 0.76350 0.90179 0.90665 0.89153 0.89249 0.88419 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 9.81 71.23 0.70 -0.01 16 2 C 0.01 0.21 6.85 40.98 0.28 0.49 16 3 C -0.19 -4.14 10.45 23.62 0.25 -3.89 16 4 C -0.27 -7.35 6.29 -19.04 -0.12 -7.47 16 5 C 0.58 19.20 7.77 86.61 0.67 19.88 16 6 O -0.59 -22.51 14.47 -4.11 -0.06 -22.56 16 7 N -0.71 -21.85 5.05 -445.81 -2.25 -24.10 16 8 C 0.17 5.86 2.20 45.02 0.10 5.96 16 9 H 0.08 3.06 7.57 -2.38 -0.02 3.04 16 10 C -0.12 -4.65 5.51 30.67 0.17 -4.48 16 11 C 0.15 6.32 6.52 86.36 0.56 6.88 16 12 N -0.61 -29.23 2.71 -699.11 -1.90 -31.13 16 13 C -0.24 -13.89 10.04 84.03 0.84 -13.04 16 14 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 15 C -0.03 -1.89 5.23 84.86 0.44 -1.45 16 16 N -0.96 -59.88 13.97 21.65 0.30 -59.58 16 17 Si 0.94 45.91 24.35 68.60 1.67 47.58 16 18 H -0.27 -11.77 6.62 99.48 0.66 -11.11 16 19 H -0.31 -15.62 7.11 99.48 0.71 -14.91 16 20 H -0.27 -12.59 6.63 99.48 0.66 -11.93 16 21 C 0.09 3.79 3.84 86.36 0.33 4.13 16 22 C 0.09 3.20 3.38 30.67 0.10 3.31 16 23 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 24 O -0.56 -19.19 12.08 -148.98 -1.80 -20.99 16 25 C 0.09 2.16 6.89 41.78 0.29 2.45 16 26 C -0.09 -1.71 9.52 71.24 0.68 -1.03 16 27 N -0.44 -7.25 3.09 -518.63 -1.60 -8.85 16 28 C 0.06 0.37 10.40 127.77 1.33 1.70 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.41 7.60 -2.39 -0.02 0.40 16 32 H 0.15 2.95 7.70 -2.91 -0.02 2.93 16 33 H 0.41 11.33 7.38 -92.71 -0.68 10.65 16 34 H 0.06 2.39 7.61 -2.39 -0.02 2.37 16 35 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 37 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 39 H 0.07 2.97 4.49 -2.39 -0.01 2.96 16 40 H 0.04 1.67 7.08 -2.39 -0.02 1.65 16 41 H 0.39 11.45 9.08 -74.06 -0.67 10.78 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.07 1.93 6.47 -2.39 -0.02 1.91 16 44 H 0.09 1.13 6.92 -2.39 -0.02 1.12 16 45 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.10 0.43 6.88 -2.38 -0.02 0.42 16 47 H 0.11 0.28 7.52 -2.39 -0.02 0.26 16 Total: -1.00 -77.15 368.36 0.54 -76.60 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: -0.45 Total: 29.62 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 6.63 Total: 13.41 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -5.44 Total: -123.66 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -1.86 Total: -43.56 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.67 Total: 47.58 kcal Total: -77.15 0.54 -76.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090795889.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.912 kcal (2) G-P(sol) polarization free energy of solvation -77.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds