Wall clock time and date at job start Fri Apr 10 2020 18:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53777 * 111.85693 * 2 1 4 4 N 1.47215 * 106.37385 * 140.61113 * 3 2 1 5 5 C 1.36937 * 126.70317 * 148.74433 * 4 3 2 6 6 H 1.08003 * 120.00115 * 194.08286 * 5 4 3 7 7 C 1.38818 * 119.99965 * 14.07578 * 5 4 3 8 8 N 1.31619 * 119.99640 * 8.95724 * 7 5 4 9 9 Si 1.86802 * 119.99966 * 188.94951 * 7 5 4 10 10 H 1.48501 * 109.46730 * 94.98525 * 9 7 5 11 11 H 1.48502 * 109.47108 * 214.98269 * 9 7 5 12 12 H 1.48497 * 109.47406 * 334.98728 * 9 7 5 13 13 C 1.47218 * 106.59764 * 328.72430 * 4 3 2 14 14 C 1.53781 * 106.37343 * 31.27568 * 13 4 3 15 15 H 1.09003 * 111.85676 * 218.43148 * 14 13 4 16 16 C 1.53783 * 109.34775 * 93.95570 * 14 13 4 17 17 N 1.47208 * 106.37898 * 228.51493 * 16 14 13 18 18 C 1.34780 * 126.70372 * 211.27376 * 17 16 14 19 19 O 1.21278 * 120.00125 * 180.02562 * 18 17 16 20 20 C 1.50699 * 119.99709 * 0.02562 * 18 17 16 21 21 C 1.53004 * 109.47081 * 179.97438 * 20 18 17 22 22 H 1.08999 * 110.53383 * 52.39180 * 21 20 18 23 23 C 1.54629 * 110.48385 * 174.99956 * 21 20 18 24 24 C 1.54486 * 101.76034 * 93.88542 * 23 21 20 25 25 N 1.46764 * 105.47377 * 25.41310 * 24 23 21 26 26 C 1.34419 * 111.30310 * 342.98169 * 25 24 23 27 27 O 1.21275 * 124.93817 * 180.44189 * 26 25 24 28 28 C 1.47222 * 106.59545 * 31.53148 * 17 16 14 29 29 H 1.08999 * 109.47067 * 302.05625 * 1 2 3 30 30 H 1.08997 * 109.47290 * 62.06039 * 1 2 3 31 31 H 1.08996 * 109.47076 * 182.06125 * 1 2 3 32 32 H 1.08995 * 110.07711 * 21.38798 * 3 2 1 33 33 H 1.09005 * 110.12221 * 259.86150 * 3 2 1 34 34 H 0.97001 * 119.99809 * 180.02562 * 8 7 5 35 35 H 1.08996 * 110.07127 * 272.04789 * 13 4 3 36 36 H 1.09001 * 110.07362 * 150.50292 * 13 4 3 37 37 H 1.09001 * 110.07458 * 109.28222 * 16 14 13 38 38 H 1.09006 * 110.11788 * 347.77290 * 16 14 13 39 39 H 1.09005 * 109.47132 * 60.00538 * 20 18 17 40 40 H 1.08998 * 109.47316 * 300.00569 * 20 18 17 41 41 H 1.09000 * 110.96370 * 211.99803 * 23 21 20 42 42 H 1.08989 * 110.97073 * 335.76567 * 23 21 20 43 43 H 1.09003 * 110.24494 * 144.41504 * 24 23 21 44 44 H 1.09003 * 110.24185 * 266.32278 * 24 23 21 45 45 H 0.97005 * 124.34183 * 162.98766 * 25 24 23 46 46 H 1.09004 * 110.07147 * 87.69780 * 28 17 16 47 47 H 1.08999 * 110.07008 * 209.23530 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1025 1.4272 0.0000 4 7 3.2702 1.4060 0.8963 5 6 4.4003 2.1715 0.7865 6 1 5.2816 1.9183 1.3571 7 6 4.4132 3.2729 -0.0585 8 7 3.2956 3.6866 -0.6172 9 14 6.0165 4.1676 -0.4022 10 1 6.6168 3.6439 -1.6554 11 1 5.7503 5.6211 -0.5506 12 1 6.9570 3.9493 0.7260 13 6 2.9855 0.4014 1.9341 14 6 2.1092 -0.6729 1.2687 15 1 1.3346 -1.0393 1.9425 16 6 3.0040 -1.8118 0.7518 17 7 2.5853 -2.0716 -0.6354 18 6 2.6202 -3.2552 -1.2791 19 8 2.2435 -3.3312 -2.4294 20 6 3.1273 -4.4842 -0.5695 21 6 3.0611 -5.6838 -1.5168 22 1 3.5625 -5.4563 -2.4575 23 6 3.6918 -6.9311 -0.8553 24 6 2.4552 -7.6170 -0.2334 25 7 1.3130 -7.1705 -1.0396 26 6 1.6234 -6.0830 -1.7661 27 8 0.8615 -5.5056 -2.5124 28 6 2.1270 -0.7847 -1.1843 29 1 -0.3633 0.5454 0.8710 30 1 -0.3634 0.4815 -0.9078 31 1 -0.3633 -1.0270 0.0370 32 1 1.3571 2.1294 0.3733 33 1 2.4094 1.7082 -1.0075 34 1 3.3047 4.4560 -1.2079 35 1 2.4480 0.8619 2.7631 36 1 3.9152 -0.0421 2.2906 37 1 2.8608 -2.7053 1.3594 38 1 4.0503 -1.5071 0.7761 39 1 2.5087 -4.6790 0.3066 40 1 4.1591 -4.3237 -0.2572 41 1 4.1602 -7.5733 -1.6011 42 1 4.4074 -6.6442 -0.0849 43 1 2.5564 -8.7008 -0.2904 44 1 2.3320 -7.3042 0.8035 45 1 0.4454 -7.6044 -1.0470 46 1 2.9684 -0.2394 -1.6119 47 1 1.3642 -0.9527 -1.9446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091734416.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:57 Heat of formation + Delta-G solvation = -40.348393 kcal Electronic energy + Delta-G solvation = -28437.240358 eV Core-core repulsion = 24620.407700 eV Total energy + Delta-G solvation = -3816.832658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.80042 -39.91307 -38.10703 -36.45222 -34.84451 -33.05029 -32.51971 -31.41016 -29.56926 -29.26202 -26.98111 -26.02061 -25.23379 -24.85779 -22.53630 -22.04981 -20.32351 -20.21577 -19.05769 -18.46256 -17.53437 -16.92870 -16.39937 -16.21799 -15.96551 -15.20071 -14.89779 -14.55610 -14.40684 -14.06120 -13.82192 -13.63599 -13.29445 -13.12004 -12.97058 -12.83817 -12.74762 -12.38929 -12.17232 -12.03919 -11.77661 -11.66472 -11.51198 -11.35982 -11.16974 -10.88479 -10.85593 -10.65644 -10.11616 -10.03387 -9.97304 -9.83644 -9.77172 -9.64002 -9.42046 -9.27866 -8.62169 -8.24199 -6.84454 -5.79042 -3.13034 2.57821 2.94247 3.18222 3.28083 3.38295 3.43572 3.45754 4.13147 4.16111 4.42574 4.46633 4.62814 4.79985 4.91579 4.97224 5.07784 5.12694 5.21590 5.24088 5.35476 5.45183 5.50423 5.52879 5.58563 5.64288 5.77046 5.77980 5.82131 5.93041 6.10864 6.18211 6.29429 6.40494 6.45366 6.48115 6.56904 6.67762 6.72831 6.80131 6.85602 6.90926 7.38889 7.57051 7.73989 7.93512 8.23147 8.23402 8.50361 9.14183 9.76306 10.48387 11.34647 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.020523 B = 0.003203 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.012106 B = 8740.068851 C = 9048.065341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.096 4.096 3 C 0.179 3.821 4 N -0.594 5.594 5 C -0.230 4.230 6 H 0.076 0.924 7 C -0.004 4.004 8 N -0.914 5.914 9 Si 0.910 3.090 10 H -0.289 1.289 11 H -0.291 1.291 12 H -0.280 1.280 13 C 0.138 3.862 14 C -0.109 4.109 15 H 0.082 0.918 16 C 0.113 3.887 17 N -0.615 5.615 18 C 0.516 3.484 19 O -0.520 6.520 20 C -0.119 4.119 21 C -0.109 4.109 22 H 0.114 0.886 23 C -0.132 4.132 24 C 0.102 3.898 25 N -0.743 5.743 26 C 0.518 3.482 27 O -0.497 6.497 28 C 0.126 3.874 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.026 0.974 33 H 0.078 0.922 34 H 0.254 0.746 35 H 0.019 0.981 36 H 0.044 0.956 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.407 0.593 46 H 0.075 0.925 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.906 -22.086 5.153 22.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.098 4.098 3 C 0.053 3.947 4 N -0.318 5.318 5 C -0.359 4.359 6 H 0.094 0.906 7 C -0.201 4.201 8 N -0.560 5.560 9 Si 0.740 3.260 10 H -0.216 1.216 11 H -0.217 1.217 12 H -0.206 1.206 13 C 0.011 3.989 14 C -0.130 4.130 15 H 0.100 0.900 16 C -0.010 4.010 17 N -0.349 5.349 18 C 0.304 3.696 19 O -0.396 6.396 20 C -0.159 4.159 21 C -0.131 4.131 22 H 0.132 0.868 23 C -0.169 4.169 24 C -0.023 4.023 25 N -0.401 5.401 26 C 0.303 3.697 27 O -0.369 6.369 28 C 0.004 3.996 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.037 0.963 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.245 0.755 46 H 0.093 0.907 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.300 -21.612 3.944 22.008 hybrid contribution 0.468 0.316 0.064 0.568 sum -0.832 -21.296 4.009 21.686 Atomic orbital electron populations 1.21609 0.93868 1.00567 1.01900 1.22411 0.94958 0.99301 0.93162 1.21236 0.88334 0.87992 0.97125 1.44443 1.17718 1.43419 1.26193 1.18985 0.88861 1.04564 1.23460 0.90631 1.24868 0.97097 0.97158 1.00985 1.69928 1.24411 1.26917 1.34743 0.86138 0.82704 0.78945 0.78179 1.21573 1.21725 1.20560 1.21353 0.95791 0.89809 0.91899 1.22829 0.97502 0.95471 0.97156 0.90006 1.22199 0.99289 0.97725 0.81812 1.48597 1.63908 1.08159 1.14250 1.20086 0.79275 0.83262 0.86977 1.90805 1.47169 1.84653 1.16929 1.21501 1.03842 0.91885 0.98700 1.21735 0.95155 0.94692 1.01564 0.86825 1.22719 0.97068 0.96013 1.01148 1.22023 0.85635 0.99634 0.95024 1.46288 1.15382 1.31845 1.46566 1.20748 0.89959 0.79655 0.79372 1.90831 1.55252 1.54881 1.35955 1.22191 0.99167 0.82248 0.96025 0.92441 0.92482 0.93572 0.95636 0.90347 0.93586 0.96311 0.93751 0.91793 0.90804 0.89040 0.87771 0.89616 0.88816 0.90426 0.91171 0.75451 0.90704 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 8.53 37.16 0.32 -1.66 16 2 C -0.10 -1.77 1.10 -152.55 -0.17 -1.93 16 3 C 0.18 4.16 4.58 -3.25 -0.01 4.14 16 4 N -0.59 -14.41 3.39 -171.13 -0.58 -14.99 16 5 C -0.23 -6.18 10.28 -15.06 -0.15 -6.34 16 6 H 0.08 1.96 7.84 -52.48 -0.41 1.55 16 7 C 0.00 -0.10 5.39 -17.43 -0.09 -0.20 16 8 N -0.91 -26.36 10.84 55.49 0.60 -25.76 16 9 Si 0.91 21.71 29.56 -169.99 -5.03 16.69 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.14 2.66 6.58 -3.24 -0.02 2.64 16 14 C -0.11 -1.77 3.66 -88.83 -0.32 -2.10 16 15 H 0.08 1.17 7.92 -51.93 -0.41 0.76 16 16 C 0.11 1.64 6.30 -3.25 -0.02 1.62 16 17 N -0.62 -10.28 3.32 -171.37 -0.57 -10.85 16 18 C 0.52 8.51 7.68 -10.98 -0.08 8.43 16 19 O -0.52 -10.77 14.22 -15.00 -0.21 -10.98 16 20 C -0.12 -1.28 4.09 -27.88 -0.11 -1.40 16 21 C -0.11 -1.14 2.54 -90.63 -0.23 -1.37 16 22 H 0.11 1.36 7.90 -51.93 -0.41 0.95 16 23 C -0.13 -0.74 6.71 -25.10 -0.17 -0.90 16 24 C 0.10 0.52 7.78 -3.12 -0.02 0.50 16 25 N -0.74 -6.43 6.24 -59.20 -0.37 -6.80 16 26 C 0.52 6.85 7.43 -10.86 -0.08 6.77 16 27 O -0.50 -9.39 16.22 -15.00 -0.24 -9.63 16 28 C 0.13 2.40 6.15 -3.07 -0.02 2.38 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.03 0.65 7.87 -51.93 -0.41 0.24 16 33 H 0.08 2.06 6.14 -51.93 -0.32 1.74 16 34 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.04 0.80 7.51 -51.93 -0.39 0.41 16 37 H 0.06 0.71 7.31 -51.93 -0.38 0.33 16 38 H 0.07 1.14 7.40 -51.93 -0.38 0.76 16 39 H 0.09 0.85 7.84 -51.93 -0.41 0.44 16 40 H 0.10 0.87 8.10 -51.93 -0.42 0.45 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.35 7.87 -51.94 -0.41 -0.06 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.41 2.99 8.96 -40.82 -0.37 2.62 16 46 H 0.07 1.61 7.41 -51.93 -0.38 1.23 16 47 H 0.07 1.38 7.64 -51.93 -0.40 0.98 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -35.74 366.94 -9.66 -45.41 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.59 Total: 0.82 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: -1.20 Total: 10.58 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.92 Total: -58.41 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.46 Total: -20.61 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.74 -9.66 -45.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091734416.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.057 kcal (2) G-P(sol) polarization free energy of solvation -35.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds