Wall clock time and date at job start Fri Apr 10 2020 18:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53777 * 111.85693 * 2 1 4 4 N 1.47215 * 106.37385 * 140.61113 * 3 2 1 5 5 C 1.36937 * 126.70317 * 148.74433 * 4 3 2 6 6 H 1.08003 * 120.00115 * 194.08286 * 5 4 3 7 7 C 1.38818 * 119.99965 * 14.07578 * 5 4 3 8 8 N 1.31619 * 119.99640 * 8.95724 * 7 5 4 9 9 Si 1.86802 * 119.99966 * 188.94951 * 7 5 4 10 10 H 1.48501 * 109.46730 * 94.98525 * 9 7 5 11 11 H 1.48502 * 109.47108 * 214.98269 * 9 7 5 12 12 H 1.48497 * 109.47406 * 334.98728 * 9 7 5 13 13 C 1.47218 * 106.59764 * 328.72430 * 4 3 2 14 14 C 1.53781 * 106.37343 * 31.27568 * 13 4 3 15 15 H 1.09003 * 111.85676 * 218.43148 * 14 13 4 16 16 C 1.53783 * 109.34775 * 93.95570 * 14 13 4 17 17 N 1.47208 * 106.37898 * 228.51493 * 16 14 13 18 18 C 1.34780 * 126.70372 * 211.27376 * 17 16 14 19 19 O 1.21278 * 120.00125 * 180.02562 * 18 17 16 20 20 C 1.50699 * 119.99709 * 0.02562 * 18 17 16 21 21 C 1.53004 * 109.47081 * 179.97438 * 20 18 17 22 22 H 1.08999 * 110.53383 * 52.39180 * 21 20 18 23 23 C 1.54629 * 110.48385 * 174.99956 * 21 20 18 24 24 C 1.54486 * 101.76034 * 93.88542 * 23 21 20 25 25 N 1.46764 * 105.47377 * 25.41310 * 24 23 21 26 26 C 1.34419 * 111.30310 * 342.98169 * 25 24 23 27 27 O 1.21275 * 124.93817 * 180.44189 * 26 25 24 28 28 C 1.47222 * 106.59545 * 31.53148 * 17 16 14 29 29 H 1.08999 * 109.47067 * 302.05625 * 1 2 3 30 30 H 1.08997 * 109.47290 * 62.06039 * 1 2 3 31 31 H 1.08996 * 109.47076 * 182.06125 * 1 2 3 32 32 H 1.08995 * 110.07711 * 21.38798 * 3 2 1 33 33 H 1.09005 * 110.12221 * 259.86150 * 3 2 1 34 34 H 0.97001 * 119.99809 * 180.02562 * 8 7 5 35 35 H 1.08996 * 110.07127 * 272.04789 * 13 4 3 36 36 H 1.09001 * 110.07362 * 150.50292 * 13 4 3 37 37 H 1.09001 * 110.07458 * 109.28222 * 16 14 13 38 38 H 1.09006 * 110.11788 * 347.77290 * 16 14 13 39 39 H 1.09005 * 109.47132 * 60.00538 * 20 18 17 40 40 H 1.08998 * 109.47316 * 300.00569 * 20 18 17 41 41 H 1.09000 * 110.96370 * 211.99803 * 23 21 20 42 42 H 1.08989 * 110.97073 * 335.76567 * 23 21 20 43 43 H 1.09003 * 110.24494 * 144.41504 * 24 23 21 44 44 H 1.09003 * 110.24185 * 266.32278 * 24 23 21 45 45 H 0.97005 * 124.34183 * 162.98766 * 25 24 23 46 46 H 1.09004 * 110.07147 * 87.69780 * 28 17 16 47 47 H 1.08999 * 110.07008 * 209.23530 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1025 1.4272 0.0000 4 7 3.2702 1.4060 0.8963 5 6 4.4003 2.1715 0.7865 6 1 5.2816 1.9183 1.3571 7 6 4.4132 3.2729 -0.0585 8 7 3.2956 3.6866 -0.6172 9 14 6.0165 4.1676 -0.4022 10 1 6.6168 3.6439 -1.6554 11 1 5.7503 5.6211 -0.5506 12 1 6.9570 3.9493 0.7260 13 6 2.9855 0.4014 1.9341 14 6 2.1092 -0.6729 1.2687 15 1 1.3346 -1.0393 1.9425 16 6 3.0040 -1.8118 0.7518 17 7 2.5853 -2.0716 -0.6354 18 6 2.6202 -3.2552 -1.2791 19 8 2.2435 -3.3312 -2.4294 20 6 3.1273 -4.4842 -0.5695 21 6 3.0611 -5.6838 -1.5168 22 1 3.5625 -5.4563 -2.4575 23 6 3.6918 -6.9311 -0.8553 24 6 2.4552 -7.6170 -0.2334 25 7 1.3130 -7.1705 -1.0396 26 6 1.6234 -6.0830 -1.7661 27 8 0.8615 -5.5056 -2.5124 28 6 2.1270 -0.7847 -1.1843 29 1 -0.3633 0.5454 0.8710 30 1 -0.3634 0.4815 -0.9078 31 1 -0.3633 -1.0270 0.0370 32 1 1.3571 2.1294 0.3733 33 1 2.4094 1.7082 -1.0075 34 1 3.3047 4.4560 -1.2079 35 1 2.4480 0.8619 2.7631 36 1 3.9152 -0.0421 2.2906 37 1 2.8608 -2.7053 1.3594 38 1 4.0503 -1.5071 0.7761 39 1 2.5087 -4.6790 0.3066 40 1 4.1591 -4.3237 -0.2572 41 1 4.1602 -7.5733 -1.6011 42 1 4.4074 -6.6442 -0.0849 43 1 2.5564 -8.7008 -0.2904 44 1 2.3320 -7.3042 0.8035 45 1 0.4454 -7.6044 -1.0470 46 1 2.9684 -0.2394 -1.6119 47 1 1.3642 -0.9527 -1.9446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091734416.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:56 Heat of formation + Delta-G solvation = -66.243847 kcal Electronic energy + Delta-G solvation = -28438.363269 eV Core-core repulsion = 24620.407700 eV Total energy + Delta-G solvation = -3817.955569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.82355 -41.14813 -39.48379 -37.37605 -36.49560 -34.39065 -33.75699 -32.99256 -31.18930 -30.02135 -28.09011 -27.74431 -26.73005 -26.08607 -24.12384 -22.59636 -21.86506 -21.23342 -20.27162 -19.91653 -18.81259 -18.33804 -17.68802 -17.18209 -17.10619 -16.60277 -16.22415 -15.97270 -15.74476 -15.47742 -14.96017 -14.77438 -14.55427 -14.45682 -14.27129 -13.88315 -13.67191 -13.63495 -13.35573 -13.22966 -13.18011 -13.06594 -12.93310 -12.76723 -12.58930 -12.26781 -12.14153 -11.89000 -11.85129 -11.78485 -11.54205 -11.46230 -11.30737 -10.88824 -10.67815 -10.59747 -9.96671 -9.62694 -8.83323 -7.87830 -5.22302 1.45997 1.47825 1.56334 1.63202 1.71951 2.05289 2.50163 2.53257 3.30941 3.34243 3.46982 3.58375 3.65983 3.74572 3.78436 3.94744 4.01767 4.22541 4.26232 4.30045 4.35938 4.47814 4.52406 4.54264 4.63788 4.70833 4.79787 4.83836 4.85649 4.95464 4.96085 5.01003 5.05837 5.14733 5.16320 5.25365 5.25538 5.29063 5.42713 5.53023 5.58398 5.75283 6.02504 6.10441 6.23375 6.67583 7.07962 7.24144 7.39564 7.77299 8.48972 9.25405 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.020523 B = 0.003203 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.012106 B = 8740.068851 C = 9048.065341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.088 4.088 3 C 0.190 3.810 4 N -0.616 5.616 5 C -0.233 4.233 6 H 0.086 0.914 7 C -0.065 4.065 8 N -0.949 5.949 9 Si 0.973 3.027 10 H -0.293 1.293 11 H -0.298 1.298 12 H -0.261 1.261 13 C 0.134 3.866 14 C -0.098 4.098 15 H 0.118 0.882 16 C 0.116 3.884 17 N -0.616 5.616 18 C 0.505 3.495 19 O -0.572 6.572 20 C -0.107 4.107 21 C -0.112 4.112 22 H 0.087 0.913 23 C -0.118 4.118 24 C 0.096 3.904 25 N -0.730 5.730 26 C 0.503 3.497 27 O -0.572 6.572 28 C 0.132 3.868 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.063 0.937 32 H -0.004 1.004 33 H 0.034 0.966 34 H 0.246 0.754 35 H 0.022 0.978 36 H 0.063 0.937 37 H 0.118 0.882 38 H 0.067 0.933 39 H 0.121 0.879 40 H 0.141 0.859 41 H 0.093 0.907 42 H 0.127 0.873 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.412 0.588 46 H 0.036 0.964 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.580 -25.779 8.763 27.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.090 4.090 3 C 0.064 3.936 4 N -0.340 5.340 5 C -0.362 4.362 6 H 0.103 0.897 7 C -0.259 4.259 8 N -0.597 5.597 9 Si 0.802 3.198 10 H -0.221 1.221 11 H -0.225 1.225 12 H -0.186 1.186 13 C 0.009 3.991 14 C -0.118 4.118 15 H 0.136 0.864 16 C -0.006 4.006 17 N -0.350 5.350 18 C 0.296 3.704 19 O -0.451 6.451 20 C -0.147 4.147 21 C -0.135 4.135 22 H 0.105 0.895 23 C -0.155 4.155 24 C -0.027 4.027 25 N -0.386 5.386 26 C 0.289 3.711 27 O -0.450 6.450 28 C 0.008 3.992 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.014 0.986 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.136 0.864 38 H 0.085 0.915 39 H 0.139 0.861 40 H 0.158 0.842 41 H 0.112 0.888 42 H 0.145 0.855 43 H 0.123 0.877 44 H 0.113 0.887 45 H 0.251 0.749 46 H 0.055 0.945 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.223 -25.393 7.653 26.522 hybrid contribution -0.004 1.411 -1.051 1.759 sum 0.219 -23.982 6.603 24.876 Atomic orbital electron populations 1.21558 0.92032 1.01695 1.02001 1.22233 0.96240 0.96077 0.94441 1.20935 0.87658 0.90501 0.94510 1.44719 1.17195 1.44085 1.28030 1.19408 0.90069 1.04271 1.22498 0.89659 1.25676 0.99942 0.98609 1.01654 1.70136 1.26419 1.27335 1.35812 0.85139 0.79501 0.77084 0.78123 1.22053 1.22502 1.18559 1.21579 0.97364 0.89314 0.90857 1.22847 0.97992 0.94983 0.95962 0.86374 1.22323 0.98235 0.99220 0.80841 1.48707 1.63822 1.07244 1.15194 1.21304 0.78051 0.84411 0.86671 1.90795 1.49225 1.85456 1.19612 1.21616 1.05988 0.88416 0.98668 1.21759 0.93601 0.96939 1.01177 0.89455 1.22793 0.97625 0.93262 1.01826 1.22408 0.83613 1.01305 0.95366 1.46374 1.16736 1.30099 1.45355 1.21365 0.90767 0.80112 0.78838 1.90788 1.57355 1.57555 1.39330 1.21825 0.97317 0.83912 0.96115 0.91377 0.93451 0.91789 0.98596 0.94759 0.94519 0.96044 0.91844 0.86389 0.91511 0.86116 0.84158 0.88803 0.85514 0.87682 0.88704 0.74926 0.94530 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.70 8.53 71.98 0.61 -3.08 16 2 C -0.09 -3.24 1.10 -50.91 -0.06 -3.30 16 3 C 0.19 9.27 4.58 86.50 0.40 9.67 16 4 N -0.62 -30.23 3.39 -695.32 -2.35 -32.59 16 5 C -0.23 -12.65 10.28 84.03 0.86 -11.79 16 6 H 0.09 4.35 7.84 -2.91 -0.02 4.33 16 7 C -0.07 -3.70 5.39 84.86 0.46 -3.24 16 8 N -0.95 -57.63 10.84 21.65 0.23 -57.40 16 9 Si 0.97 45.69 29.56 68.60 2.03 47.72 16 10 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 11 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 12 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 13 C 0.13 4.88 6.58 86.51 0.57 5.45 16 14 C -0.10 -2.89 3.66 -9.63 -0.04 -2.92 16 15 H 0.12 2.74 7.92 -2.39 -0.02 2.72 16 16 C 0.12 2.90 6.30 86.51 0.54 3.45 16 17 N -0.62 -19.84 3.32 -814.49 -2.70 -22.54 16 18 C 0.51 16.16 7.68 87.66 0.67 16.84 16 19 O -0.57 -24.66 14.22 16.63 0.24 -24.43 16 20 C -0.11 -1.89 4.09 29.85 0.12 -1.77 16 21 C -0.11 -2.08 2.54 -10.80 -0.03 -2.11 16 22 H 0.09 2.08 7.90 -2.39 -0.02 2.06 16 23 C -0.12 -0.73 6.71 31.65 0.21 -0.52 16 24 C 0.10 0.47 7.78 86.83 0.68 1.15 16 25 N -0.73 -10.67 6.24 -459.80 -2.87 -13.54 16 26 C 0.50 12.90 7.43 87.90 0.65 13.55 16 27 O -0.57 -22.57 16.22 16.64 0.27 -22.30 16 28 C 0.13 5.25 6.15 86.61 0.53 5.78 16 29 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.00 -0.21 7.87 -2.39 -0.02 -0.23 16 33 H 0.03 1.95 6.14 -2.38 -0.01 1.93 16 34 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 2.07 7.51 -2.39 -0.02 2.05 16 37 H 0.12 1.77 7.31 -2.39 -0.02 1.76 16 38 H 0.07 1.82 7.40 -2.38 -0.02 1.80 16 39 H 0.12 1.49 7.84 -2.38 -0.02 1.47 16 40 H 0.14 1.52 8.10 -2.39 -0.02 1.50 16 41 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.13 0.04 7.87 -2.39 -0.02 0.02 16 43 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.41 5.19 8.96 -92.70 -0.83 4.36 16 46 H 0.04 1.71 7.41 -2.39 -0.02 1.69 16 47 H 0.05 2.24 7.64 -2.39 -0.02 2.23 16 Total: -1.00 -88.08 366.94 1.18 -86.89 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.14 Total: 11.02 kcal Atomic # 6 Polarization: 20.95 SS G_CDS: 6.20 Total: 27.15 kcal Atomic # 7 Polarization: -118.37 SS G_CDS: -7.69 Total: -126.06 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: 0.51 Total: -46.73 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -88.08 1.18 -86.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091734416.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.650 kcal (2) G-P(sol) polarization free energy of solvation -88.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds