Wall clock time and date at job start Fri Apr 10 2020 18:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53778 * 111.85813 * 2 1 4 4 N 1.47215 * 106.37991 * 140.61609 * 3 2 1 5 5 C 1.36934 * 126.71009 * 148.74465 * 4 3 2 6 6 H 1.08001 * 119.99462 * 0.02562 * 5 4 3 7 7 C 1.38811 * 120.00226 * 179.97438 * 5 4 3 8 8 N 1.31617 * 119.99939 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99975 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47005 * 89.99972 * 9 7 5 11 11 H 1.48493 * 109.47305 * 210.00470 * 9 7 5 12 12 H 1.48506 * 109.47064 * 330.00284 * 9 7 5 13 13 C 1.46516 * 106.96762 * 329.55375 * 4 3 2 14 14 C 1.53788 * 106.73145 * 29.90034 * 13 4 3 15 15 H 1.08998 * 112.60664 * 220.36361 * 14 13 4 16 16 C 1.53783 * 109.34314 * 95.35841 * 14 13 4 17 17 N 1.47219 * 106.37578 * 228.51590 * 16 14 13 18 18 C 1.34777 * 126.70333 * 211.23537 * 17 16 14 19 19 O 1.21283 * 119.99750 * 180.02562 * 18 17 16 20 20 C 1.50702 * 119.99928 * 0.30816 * 18 17 16 21 21 C 1.52996 * 109.47159 * 179.72352 * 20 18 17 22 22 H 1.09008 * 110.43477 * 307.54099 * 21 20 18 23 23 C 1.54626 * 110.48957 * 185.00089 * 21 20 18 24 24 C 1.54476 * 101.76670 * 216.52404 * 23 21 20 25 25 N 1.46762 * 105.47425 * 25.41125 * 24 23 21 26 26 C 1.34424 * 111.29982 * 342.98654 * 25 24 23 27 27 O 1.21279 * 124.94016 * 180.44332 * 26 25 24 28 28 C 1.47218 * 106.59342 * 31.50593 * 17 16 14 29 29 H 1.09006 * 109.46818 * 302.05946 * 1 2 3 30 30 H 1.09001 * 109.47636 * 62.05510 * 1 2 3 31 31 H 1.08995 * 109.47271 * 182.06104 * 1 2 3 32 32 H 1.08998 * 110.07719 * 259.84025 * 3 2 1 33 33 H 1.09001 * 110.08110 * 21.38459 * 3 2 1 34 34 H 0.97004 * 120.00042 * 180.02562 * 8 7 5 35 35 H 1.08994 * 108.73052 * 271.19358 * 13 4 3 36 36 H 1.08998 * 111.06931 * 149.89008 * 13 4 3 37 37 H 1.09007 * 110.07105 * 109.29689 * 16 14 13 38 38 H 1.08991 * 110.07704 * 347.74707 * 16 14 13 39 39 H 1.09004 * 109.46965 * 299.72211 * 20 18 17 40 40 H 1.08994 * 109.46990 * 59.72065 * 20 18 17 41 41 H 1.09009 * 110.96654 * 334.63867 * 23 21 20 42 42 H 1.08996 * 110.97079 * 98.36490 * 23 21 20 43 43 H 1.08993 * 110.25018 * 144.40922 * 24 23 21 44 44 H 1.09000 * 110.24614 * 266.32736 * 24 23 21 45 45 H 0.97000 * 124.35493 * 162.98384 * 25 24 23 46 46 H 1.09000 * 110.07835 * 87.72464 * 28 17 16 47 47 H 1.09001 * 110.07041 * 209.26877 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1025 1.4272 0.0000 4 7 3.2703 1.4061 0.8962 5 6 4.4003 2.1716 0.7863 6 1 4.4958 2.8803 -0.0230 7 6 5.4226 2.0374 1.7157 8 7 5.3060 1.1740 2.7022 9 14 6.9645 3.0811 1.5654 10 1 6.7809 4.3469 2.3198 11 1 8.1225 2.3366 2.1220 12 1 7.2159 3.3896 0.1346 13 6 3.0041 0.3939 1.9215 14 6 2.1092 -0.6729 1.2687 15 1 1.3241 -1.0272 1.9368 16 6 2.9854 -1.8264 0.7525 17 7 2.5537 -2.0889 -0.6303 18 6 2.5693 -3.2765 -1.2673 19 8 2.1834 -3.3544 -2.4145 20 6 3.0602 -4.5088 -0.5521 21 6 2.9679 -5.7138 -1.4903 22 1 1.9647 -5.7941 -1.9092 23 6 3.3473 -7.0127 -0.7421 24 6 4.0961 -7.8011 -1.8394 25 7 4.6176 -6.7870 -2.7633 26 6 3.9979 -5.6064 -2.5930 27 8 4.2303 -4.6015 -3.2311 28 6 2.1077 -0.7995 -1.1834 29 1 -0.3633 0.5455 0.8710 30 1 -0.3634 0.4816 -0.9078 31 1 -0.3633 -1.0269 0.0370 32 1 2.4094 1.7073 -1.0077 33 1 1.3571 2.1295 0.3733 34 1 6.0202 1.0805 3.3519 35 1 2.4786 0.8662 2.7514 36 1 3.9304 -0.0597 2.2741 37 1 2.8347 -2.7144 1.3664 38 1 4.0354 -1.5343 0.7675 39 1 4.0969 -4.3636 -0.2480 40 1 2.4445 -4.6867 0.3295 41 1 4.0038 -6.7992 0.1016 42 1 2.4566 -7.5487 -0.4147 43 1 4.9163 -8.3701 -1.4019 44 1 3.4092 -8.4691 -2.3591 45 1 5.3194 -6.9480 -3.4133 46 1 2.9526 -0.2675 -1.6206 47 1 1.3370 -0.9622 -1.9369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091734417.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:00 Heat of formation + Delta-G solvation = -38.312465 kcal Electronic energy + Delta-G solvation = -28448.542924 eV Core-core repulsion = 24631.798550 eV Total energy + Delta-G solvation = -3816.744374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.68710 -39.85928 -38.04903 -36.34488 -34.83697 -33.15675 -32.69253 -30.80388 -29.92914 -29.20944 -26.92360 -25.93701 -25.15402 -24.76388 -22.44784 -22.11700 -20.18397 -20.09738 -18.89358 -18.46439 -17.42474 -16.83851 -16.80360 -16.32844 -15.47523 -15.30067 -14.76457 -14.54835 -14.38081 -14.03251 -13.74089 -13.57052 -13.33391 -13.13404 -12.93600 -12.71953 -12.61374 -12.35723 -12.08481 -11.94999 -11.64377 -11.60442 -11.54146 -11.28501 -11.16802 -10.88322 -10.81309 -10.69522 -10.10823 -10.09199 -9.89394 -9.76577 -9.70409 -9.55179 -9.36224 -9.21114 -8.69560 -8.14757 -6.88351 -5.66870 -3.10551 2.66705 3.05539 3.23820 3.38606 3.40291 3.45213 3.46648 4.17828 4.20689 4.47173 4.48133 4.70574 4.90638 5.01326 5.07110 5.13863 5.21226 5.25956 5.31335 5.40916 5.48153 5.52931 5.58157 5.63135 5.73706 5.78195 5.86742 5.88089 5.99901 6.11840 6.22206 6.34240 6.37356 6.41376 6.52775 6.59605 6.72698 6.81433 6.82127 6.92322 6.95327 7.41324 7.60766 7.80704 8.03270 8.29820 8.36568 8.60249 9.20772 9.80302 10.47009 11.34697 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.014497 B = 0.003610 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.003231 B = 7754.076161 C = 8709.626803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.089 4.089 3 C 0.145 3.855 4 N -0.595 5.595 5 C -0.217 4.217 6 H 0.078 0.922 7 C -0.011 4.011 8 N -0.923 5.923 9 Si 0.915 3.085 10 H -0.289 1.289 11 H -0.290 1.290 12 H -0.281 1.281 13 C 0.145 3.855 14 C -0.116 4.116 15 H 0.077 0.923 16 C 0.112 3.888 17 N -0.615 5.615 18 C 0.527 3.473 19 O -0.531 6.531 20 C -0.120 4.120 21 C -0.108 4.108 22 H 0.115 0.885 23 C -0.132 4.132 24 C 0.103 3.897 25 N -0.743 5.743 26 C 0.518 3.482 27 O -0.499 6.499 28 C 0.127 3.873 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.043 0.957 33 H 0.023 0.977 34 H 0.252 0.748 35 H 0.007 0.993 36 H 0.126 0.874 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.407 0.593 46 H 0.068 0.932 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.466 -18.399 -2.703 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.091 4.091 3 C 0.018 3.982 4 N -0.318 5.318 5 C -0.345 4.345 6 H 0.096 0.904 7 C -0.206 4.206 8 N -0.572 5.572 9 Si 0.745 3.255 10 H -0.216 1.216 11 H -0.217 1.217 12 H -0.207 1.207 13 C 0.019 3.981 14 C -0.137 4.137 15 H 0.096 0.904 16 C -0.010 4.010 17 N -0.349 5.349 18 C 0.315 3.685 19 O -0.407 6.407 20 C -0.160 4.160 21 C -0.130 4.130 22 H 0.133 0.867 23 C -0.170 4.170 24 C -0.021 4.021 25 N -0.401 5.401 26 C 0.303 3.697 27 O -0.371 6.371 28 C 0.005 3.995 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.040 0.960 34 H 0.063 0.937 35 H 0.025 0.975 36 H 0.143 0.857 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.119 0.881 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.246 0.754 46 H 0.086 0.914 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.404 -17.886 -3.535 19.324 hybrid contribution 1.113 0.376 -0.181 1.189 sum -5.291 -17.510 -3.717 18.666 Atomic orbital electron populations 1.21652 0.93858 1.01031 1.01549 1.22218 0.94821 0.97310 0.94752 1.21382 0.90045 0.92061 0.94718 1.44340 1.15304 1.43057 1.29137 1.19108 0.92385 1.13960 1.09046 0.90399 1.24739 0.98743 0.99813 0.97319 1.69612 1.33054 1.38081 1.16455 0.86059 0.82535 0.79367 0.77497 1.21640 1.21665 1.20709 1.21829 0.99052 0.87630 0.89555 1.23069 0.97739 0.96536 0.96322 0.90443 1.22289 0.99981 0.97710 0.81058 1.48562 1.63903 1.07508 1.14894 1.19959 0.78766 0.83295 0.86451 1.90708 1.47752 1.85337 1.16954 1.21491 1.03852 0.91883 0.98773 1.21725 1.01029 0.94829 0.95392 0.86673 1.22727 1.01476 0.94997 0.97757 1.21991 0.98477 0.91015 0.90667 1.46252 1.41309 1.12030 1.40505 1.20749 0.81987 0.82708 0.84289 1.90840 1.65224 1.31794 1.49225 1.22047 0.98917 0.82967 0.95585 0.92374 0.92815 0.93144 0.93851 0.95967 0.93695 0.97507 0.85686 0.91812 0.90204 0.88758 0.88062 0.89560 0.88954 0.90394 0.91260 0.75434 0.91354 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 8.45 37.16 0.31 -1.48 16 2 C -0.09 -1.56 1.09 -152.58 -0.17 -1.73 16 3 C 0.14 2.99 6.24 -3.25 -0.02 2.97 16 4 N -0.59 -14.75 3.37 -171.69 -0.58 -15.33 16 5 C -0.22 -5.92 10.33 -15.06 -0.16 -6.07 16 6 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 7 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 8 N -0.92 -25.82 10.06 55.49 0.56 -25.26 16 9 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.15 3.33 5.46 -3.62 -0.02 3.31 16 14 C -0.12 -2.09 3.69 -88.83 -0.33 -2.42 16 15 H 0.08 1.24 7.88 -51.93 -0.41 0.83 16 16 C 0.11 1.91 6.30 -3.24 -0.02 1.89 16 17 N -0.62 -10.89 3.32 -171.40 -0.57 -11.46 16 18 C 0.53 9.15 7.34 -10.98 -0.08 9.07 16 19 O -0.53 -11.02 14.27 -15.86 -0.23 -11.25 16 20 C -0.12 -1.47 4.07 -27.88 -0.11 -1.58 16 21 C -0.11 -1.18 2.54 -90.64 -0.23 -1.41 16 22 H 0.12 1.31 7.90 -51.92 -0.41 0.90 16 23 C -0.13 -0.82 6.70 -25.10 -0.17 -0.99 16 24 C 0.10 0.61 7.78 -3.12 -0.02 0.58 16 25 N -0.74 -7.13 6.24 -59.21 -0.37 -7.50 16 26 C 0.52 7.30 7.70 -10.86 -0.08 7.22 16 27 O -0.50 -9.86 15.63 -15.86 -0.25 -10.11 16 28 C 0.13 2.36 6.15 -3.10 -0.02 2.34 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.89 7.56 -51.93 -0.39 0.50 16 33 H 0.02 0.46 7.87 -51.93 -0.41 0.05 16 34 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.13 3.18 4.87 -51.93 -0.25 2.93 16 37 H 0.06 0.87 7.31 -51.93 -0.38 0.49 16 38 H 0.08 1.60 7.39 -51.93 -0.38 1.22 16 39 H 0.09 1.16 8.12 -51.93 -0.42 0.73 16 40 H 0.10 0.94 7.85 -51.93 -0.41 0.54 16 41 H 0.09 0.48 7.91 -51.92 -0.41 0.07 16 42 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.41 3.38 8.96 -40.82 -0.37 3.01 16 46 H 0.07 1.42 7.47 -51.93 -0.39 1.03 16 47 H 0.07 1.25 7.61 -51.93 -0.40 0.86 16 LS Contribution 364.96 15.07 5.50 5.50 Total: -1.00 -35.08 364.96 -9.70 -44.78 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.53 Total: 2.44 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: -1.21 Total: 11.31 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.96 Total: -59.54 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.47 Total: -21.35 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.08 -9.70 -44.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091734417.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.471 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds