Wall clock time and date at job start Fri Apr 10 2020 18:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.54453 * 112.29822 * 2 1 4 4 N 1.48324 * 104.32512 * 96.98903 * 3 2 1 5 5 C 1.36941 * 128.20190 * 221.77374 * 4 3 2 6 6 H 1.07997 * 119.99635 * 21.17502 * 5 4 3 7 7 C 1.38806 * 120.00290 * 201.18259 * 5 4 3 8 8 N 1.31617 * 120.00231 * 21.53160 * 7 5 4 9 9 Si 1.86809 * 120.00033 * 201.54079 * 7 5 4 10 10 H 1.48498 * 109.47031 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.46537 * 299.99619 * 9 7 5 12 12 H 1.48498 * 109.47041 * 59.99324 * 9 7 5 13 13 C 1.48331 * 103.60496 * 42.03321 * 4 3 2 14 14 C 1.54824 * 104.14046 * 317.93803 * 13 4 3 15 15 H 1.09003 * 112.45008 * 263.19846 * 14 13 4 16 16 C 1.53743 * 109.36591 * 137.74177 * 14 13 4 17 17 N 1.47195 * 106.42852 * 229.34303 * 16 14 13 18 18 C 1.34777 * 126.70851 * 211.37382 * 17 16 14 19 19 O 1.21280 * 119.99463 * 354.67070 * 18 17 16 20 20 C 1.50694 * 120.00585 * 174.67658 * 18 17 16 21 21 H 1.09000 * 109.39897 * 320.02963 * 20 18 17 22 22 C 1.53066 * 109.40368 * 200.28552 * 20 18 17 23 23 C 1.53324 * 108.43693 * 190.97711 * 22 20 18 24 24 C 1.52928 * 108.68637 * 67.50999 * 23 22 20 25 25 N 1.45755 * 110.48373 * 309.25402 * 24 23 22 26 26 C 1.33357 * 124.10873 * 19.09718 * 25 24 23 27 27 O 1.21276 * 118.24566 * 177.75395 * 26 25 24 28 28 C 1.47637 * 106.36487 * 31.85207 * 17 16 14 29 29 H 1.08992 * 109.47332 * 61.00866 * 1 2 3 30 30 H 1.08993 * 109.46830 * 181.01607 * 1 2 3 31 31 H 1.09005 * 109.46652 * 301.01017 * 1 2 3 32 32 H 1.09000 * 110.46510 * 338.27424 * 3 2 1 33 33 H 1.09006 * 110.57078 * 215.75476 * 3 2 1 34 34 H 0.97005 * 120.00002 * 5.90562 * 8 7 5 35 35 H 1.09004 * 110.46573 * 76.67513 * 13 4 3 36 36 H 1.08999 * 110.46470 * 199.26024 * 13 4 3 37 37 H 1.09003 * 110.06399 * 348.58342 * 16 14 13 38 38 H 1.08999 * 110.07087 * 110.04886 * 16 14 13 39 39 H 1.08997 * 109.67357 * 310.70229 * 22 20 18 40 40 H 1.08999 * 109.67277 * 71.23240 * 22 20 18 41 41 H 1.08997 * 109.59294 * 307.74866 * 23 22 20 42 42 H 1.09005 * 109.73857 * 187.34709 * 23 22 20 43 43 H 1.08997 * 109.29861 * 188.94474 * 24 23 22 44 44 H 1.08990 * 109.13329 * 69.45888 * 24 23 22 45 45 H 0.97001 * 117.94636 * 199.07951 * 25 24 23 46 46 H 1.09000 * 109.48589 * 209.02593 * 28 17 16 47 47 H 1.08995 * 110.86157 * 87.37749 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1161 1.4290 0.0000 4 7 2.4171 1.7022 1.4264 5 6 2.2033 2.8568 2.1310 6 1 1.4787 3.5769 1.7806 7 6 2.9180 3.1018 3.2955 8 7 4.0610 2.4849 3.5083 9 14 2.2573 4.3068 4.5609 10 1 3.2001 4.3895 5.7052 11 1 2.1136 5.6478 3.9394 12 1 0.9327 3.8407 5.0440 13 6 3.0106 0.4308 1.9075 14 6 2.1222 -0.6659 1.2711 15 1 1.3493 -1.0226 1.9520 16 6 3.0133 -1.8062 0.7519 17 7 2.5823 -2.0753 -0.6295 18 6 2.6114 -3.2632 -1.2655 19 8 3.1136 -4.2270 -0.7272 20 6 2.0203 -3.3939 -2.6455 21 1 1.0957 -2.8191 -2.6992 22 6 1.7186 -4.8669 -2.9321 23 6 1.3823 -5.0122 -4.4209 24 6 2.6428 -4.7262 -5.2382 25 7 3.2449 -3.4655 -4.8227 26 6 2.9955 -2.8656 -3.6581 27 8 3.5877 -1.8384 -3.4031 28 6 2.1239 -0.7849 -1.1811 29 1 -0.3633 0.4980 -0.8988 30 1 -0.3633 -1.0275 0.0182 31 1 -0.3633 0.5295 0.8809 32 1 1.3830 2.1416 -0.3780 33 1 3.0277 1.4692 -0.5963 34 1 4.4465 1.9255 2.8159 35 1 4.0406 0.3368 1.5635 36 1 2.9646 0.3763 2.9952 37 1 4.0590 -1.4988 0.7642 38 1 2.8782 -2.6960 1.3667 39 1 2.5917 -5.4737 -2.6925 40 1 0.8694 -5.1913 -2.3307 41 1 0.6022 -4.3004 -4.6906 42 1 1.0377 -6.0264 -4.6232 43 1 2.3819 -4.6698 -6.2950 44 1 3.3581 -5.5343 -5.0863 45 1 3.8661 -3.0360 -5.4314 46 1 1.3569 -0.9635 -1.9348 47 1 2.9556 -0.2318 -1.6173 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091759943.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:02 Heat of formation + Delta-G solvation = -68.064576 kcal Electronic energy + Delta-G solvation = -28729.616658 eV Core-core repulsion = 24911.582136 eV Total energy + Delta-G solvation = -3818.034522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.22869 -41.10136 -39.60931 -37.56482 -36.80917 -34.56632 -34.14287 -32.54629 -31.79650 -30.75303 -27.97196 -27.55254 -26.81342 -25.73484 -24.08147 -23.71562 -22.29077 -21.13860 -20.12396 -19.73095 -19.30428 -18.60440 -18.18159 -17.71684 -16.79327 -16.62249 -16.27987 -15.98534 -15.77260 -15.60995 -15.32098 -15.21442 -15.03330 -14.72208 -14.45536 -14.24752 -14.14159 -13.69318 -13.53579 -13.18378 -12.92528 -12.89832 -12.53805 -12.47743 -12.41064 -12.39183 -12.24253 -11.95032 -11.91287 -11.75896 -11.64964 -11.56537 -11.44951 -11.09056 -10.83871 -10.60521 -10.09697 -9.83630 -9.06633 -8.33979 -5.39252 1.15522 1.47010 1.57422 1.66330 1.84467 1.90320 2.31915 2.63664 3.15175 3.21461 3.30027 3.42655 3.49631 3.63817 3.77805 3.81070 3.84669 4.01369 4.09494 4.14439 4.19020 4.24892 4.34540 4.50963 4.51489 4.62626 4.72942 4.74620 4.76608 4.82752 4.90145 4.91986 4.95218 5.02804 5.06530 5.08239 5.13954 5.18958 5.26702 5.33150 5.42272 5.64118 5.76724 6.18886 6.26358 6.41084 6.80869 6.90456 7.08162 7.65088 8.33851 9.01482 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.029797 B = 0.003065 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.475427 B = 9134.218268 C = 9248.330806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.077 4.077 3 C 0.135 3.865 4 N -0.621 5.621 5 C -0.330 4.330 6 H 0.067 0.933 7 C -0.085 4.085 8 N -0.955 5.955 9 Si 1.123 2.877 10 H -0.294 1.294 11 H -0.273 1.273 12 H -0.276 1.276 13 C 0.151 3.849 14 C -0.096 4.096 15 H 0.095 0.905 16 C 0.118 3.882 17 N -0.601 5.601 18 C 0.543 3.457 19 O -0.576 6.576 20 C -0.117 4.117 21 H 0.148 0.852 22 C -0.107 4.107 23 C -0.129 4.129 24 C 0.099 3.901 25 N -0.706 5.706 26 C 0.524 3.476 27 O -0.585 6.585 28 C 0.134 3.866 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.015 0.985 34 H 0.252 0.748 35 H 0.007 0.993 36 H 0.035 0.965 37 H 0.050 0.950 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.112 0.888 44 H 0.074 0.926 45 H 0.408 0.592 46 H 0.099 0.901 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.663 -17.119 -20.680 28.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.080 4.080 3 C 0.009 3.991 4 N -0.346 5.346 5 C -0.459 4.459 6 H 0.084 0.916 7 C -0.279 4.279 8 N -0.598 5.598 9 Si 0.947 3.053 10 H -0.220 1.220 11 H -0.199 1.199 12 H -0.202 1.202 13 C 0.024 3.976 14 C -0.117 4.117 15 H 0.113 0.887 16 C -0.006 4.006 17 N -0.332 5.332 18 C 0.332 3.668 19 O -0.456 6.456 20 C -0.141 4.141 21 H 0.166 0.834 22 C -0.145 4.145 23 C -0.167 4.167 24 C -0.024 4.024 25 N -0.357 5.357 26 C 0.309 3.691 27 O -0.465 6.465 28 C 0.011 3.989 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.033 0.967 34 H 0.063 0.937 35 H 0.025 0.975 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.136 0.864 43 H 0.130 0.870 44 H 0.093 0.907 45 H 0.244 0.756 46 H 0.117 0.883 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.029 -16.515 -18.629 26.840 hybrid contribution 0.927 -0.116 -1.324 1.621 sum -9.102 -16.632 -19.953 27.524 Atomic orbital electron populations 1.21542 0.90672 1.02277 1.02440 1.22322 0.97575 0.94792 0.93286 1.22016 0.96702 0.94533 0.85851 1.45417 1.73412 1.09434 1.06322 1.20078 1.18956 0.98109 1.08717 0.91567 1.27341 0.94225 1.03905 1.02460 1.70889 1.16967 1.34259 1.37699 0.82753 0.74970 0.73870 0.73739 1.22028 1.19871 1.20239 1.21719 0.93280 0.85632 0.96943 1.22979 0.97552 0.93843 0.97304 0.88712 1.21947 0.97481 0.98189 0.82960 1.48624 1.62354 1.08369 1.13831 1.20122 0.78639 0.80681 0.87405 1.90671 1.47350 1.38656 1.68942 1.21460 1.00258 1.02938 0.89423 0.83438 1.21610 1.03516 0.90455 0.98904 1.21944 0.97315 1.05661 0.91738 1.21795 0.95575 0.84079 1.00943 1.45434 1.47060 1.25324 1.17883 1.19700 0.82605 0.83659 0.83112 1.90827 1.51581 1.26404 1.77713 1.22198 0.98983 0.82450 0.95230 0.90501 0.91093 0.93488 0.92277 0.96720 0.93741 0.97494 0.94661 0.93167 0.90180 0.91520 0.89030 0.89483 0.86419 0.86960 0.90726 0.75600 0.88328 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.01 8.61 71.98 0.62 -2.39 16 2 C -0.08 -2.59 1.08 -50.67 -0.05 -2.64 16 3 C 0.13 5.65 6.37 86.52 0.55 6.20 16 4 N -0.62 -32.34 3.23 -686.21 -2.22 -34.56 16 5 C -0.33 -18.94 10.25 84.03 0.86 -18.08 16 6 H 0.07 3.70 7.92 -2.91 -0.02 3.67 16 7 C -0.08 -4.96 5.18 84.86 0.44 -4.52 16 8 N -0.95 -60.73 12.73 21.65 0.28 -60.45 16 9 Si 1.12 51.91 29.97 68.60 2.06 53.96 16 10 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 13 C 0.15 7.37 4.66 86.65 0.40 7.77 16 14 C -0.10 -3.62 3.73 -9.15 -0.03 -3.65 16 15 H 0.09 3.41 7.93 -2.39 -0.02 3.39 16 16 C 0.12 4.23 6.52 86.50 0.56 4.79 16 17 N -0.60 -19.43 3.28 -814.26 -2.67 -22.10 16 18 C 0.54 16.63 6.67 87.66 0.58 17.21 16 19 O -0.58 -21.18 16.08 -3.03 -0.05 -21.23 16 20 C -0.12 -2.39 2.16 -12.43 -0.03 -2.41 16 21 H 0.15 2.25 7.04 -2.39 -0.02 2.24 16 22 C -0.11 -1.50 5.01 30.72 0.15 -1.35 16 23 C -0.13 -0.72 6.02 30.68 0.18 -0.53 16 24 C 0.10 0.60 7.17 86.50 0.62 1.22 16 25 N -0.71 -10.05 5.45 -467.32 -2.55 -12.59 16 26 C 0.52 11.92 7.28 87.71 0.64 12.56 16 27 O -0.58 -18.73 15.18 -3.02 -0.05 -18.78 16 28 C 0.13 4.05 4.82 86.41 0.42 4.47 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.06 2.36 7.92 -2.39 -0.02 2.34 16 33 H 0.01 0.66 7.17 -2.38 -0.02 0.65 16 34 H 0.25 16.40 6.22 -92.70 -0.58 15.83 16 35 H 0.01 0.38 6.84 -2.39 -0.02 0.36 16 36 H 0.03 1.92 7.25 -2.39 -0.02 1.90 16 37 H 0.05 2.00 7.15 -2.39 -0.02 1.98 16 38 H 0.08 2.78 7.98 -2.39 -0.02 2.76 16 39 H 0.07 1.24 7.47 -2.39 -0.02 1.22 16 40 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 41 H 0.09 0.34 8.12 -2.39 -0.02 0.32 16 42 H 0.12 0.11 8.14 -2.38 -0.02 0.09 16 43 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.41 5.18 8.80 -92.71 -0.82 4.36 16 46 H 0.10 2.32 6.47 -2.39 -0.02 2.30 16 47 H 0.06 2.20 6.54 -2.39 -0.02 2.18 16 Total: -1.00 -81.68 360.56 1.09 -80.59 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.36 Total: 16.50 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 5.92 Total: 18.65 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -7.16 Total: -129.70 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -0.09 Total: -40.01 kcal Atomic # 14 Polarization: 51.91 SS G_CDS: 2.06 Total: 53.96 kcal Total: -81.68 1.09 -80.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091759943.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.530 kcal (2) G-P(sol) polarization free energy of solvation -81.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds