Wall clock time and date at job start Fri Apr 10 2020 18:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 110.85804 * 2 1 4 4 O 1.21285 * 119.99359 * 239.29824 * 3 2 1 5 5 N 1.34777 * 120.00316 * 59.29098 * 3 2 1 6 6 C 1.47214 * 126.69964 * 359.69884 * 5 3 2 7 7 C 1.54106 * 106.21101 * 148.63274 * 6 5 3 8 8 H 1.08993 * 112.44450 * 141.25976 * 7 6 5 9 9 C 1.53778 * 109.54684 * 266.30197 * 7 6 5 10 10 N 1.47215 * 106.37883 * 131.53372 * 9 7 6 11 11 C 1.36935 * 126.70264 * 148.72102 * 10 9 7 12 12 H 1.07997 * 119.99820 * 179.97438 * 11 10 9 13 13 C 1.38813 * 119.99876 * 359.97438 * 11 10 9 14 14 N 1.31618 * 120.00082 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99612 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47523 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47224 * 120.00174 * 15 13 11 18 18 H 1.48505 * 109.47052 * 239.99849 * 15 13 11 19 19 C 1.48972 * 107.07822 * 329.18278 * 10 9 7 20 20 C 1.53785 * 105.50414 * 30.33971 * 19 10 9 21 21 C 1.53000 * 111.85907 * 104.53704 * 20 19 10 22 22 C 1.47208 * 126.70107 * 179.97438 * 5 3 2 23 23 C 1.54478 * 110.97079 * 236.20602 * 2 1 3 24 24 N 1.46762 * 105.47258 * 267.30166 * 23 2 1 25 25 C 1.34424 * 111.30195 * 342.97989 * 24 23 2 26 26 O 1.21280 * 124.94225 * 180.43947 * 25 24 23 27 27 C 1.51385 * 110.12085 * 0.40497 * 25 24 23 28 28 H 1.09001 * 109.47002 * 60.70228 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.70665 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.70494 * 1 2 3 31 31 H 1.09001 * 110.06728 * 267.94857 * 6 5 3 32 32 H 1.08996 * 110.07960 * 29.48945 * 6 5 3 33 33 H 1.09000 * 110.08009 * 250.76739 * 9 7 6 34 34 H 1.09006 * 110.07662 * 12.24927 * 9 7 6 35 35 H 0.97002 * 119.99262 * 180.02562 * 14 13 11 36 36 H 1.09004 * 110.08251 * 271.61170 * 19 10 9 37 37 H 1.09006 * 110.92101 * 149.50668 * 19 10 9 38 38 H 1.08993 * 109.47060 * 182.04787 * 21 20 19 39 39 H 1.08998 * 109.47174 * 302.04795 * 21 20 19 40 40 H 1.09005 * 109.47063 * 62.04677 * 21 20 19 41 41 H 1.08999 * 110.07824 * 330.51387 * 22 5 3 42 42 H 1.09002 * 110.07021 * 91.99601 * 22 5 3 43 43 H 1.09003 * 110.24695 * 26.29643 * 23 2 1 44 44 H 1.08995 * 110.24760 * 148.20832 * 23 2 1 45 45 H 0.97000 * 124.35021 * 162.96621 * 24 23 2 46 46 H 1.08990 * 110.49660 * 257.59258 * 27 25 24 47 47 H 1.09005 * 110.51264 * 134.92299 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0666 1.4083 0.0000 4 8 2.7837 1.7839 -0.9032 5 7 1.7496 2.2503 1.0035 6 6 0.8921 1.9539 2.1628 7 6 1.4360 2.8027 3.3284 8 1 0.6409 3.2131 3.9508 9 6 2.4338 1.9694 4.1498 10 7 3.6281 2.8111 4.3301 11 6 4.4821 2.8016 5.4005 12 1 5.3306 3.4694 5.4202 13 6 4.2570 1.9338 6.4602 14 7 3.2225 1.1203 6.4364 15 14 5.4223 1.9204 7.9201 16 1 6.4978 2.9214 7.7043 17 1 4.6715 2.2586 9.1560 18 1 6.0244 0.5702 8.0606 19 6 3.7302 3.6884 3.1304 20 6 2.2829 3.9151 2.6625 21 6 1.7790 5.3131 3.0264 22 6 2.1887 3.6475 1.1514 23 6 2.0829 -0.8023 -1.1987 24 7 2.2852 -2.1665 -0.6969 25 6 2.2955 -2.1960 0.6470 26 8 2.4524 -3.1935 1.3187 27 6 2.0834 -0.8029 1.2001 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 -1.0275 0.0127 30 1 -0.3633 0.5247 0.8836 31 1 -0.1397 2.2298 1.9451 32 1 0.9521 0.8944 2.4116 33 1 2.0031 1.7186 5.1192 34 1 2.6947 1.0591 3.6100 35 1 3.0651 0.5142 7.1772 36 1 4.3021 3.1884 2.3487 37 1 4.1952 4.6413 3.3834 38 1 0.7413 5.4189 2.7103 39 1 1.8464 5.4543 4.1051 40 1 2.3904 6.0621 2.5230 41 1 3.1646 3.7844 0.6856 42 1 1.4600 4.3187 0.6967 43 1 1.3618 -0.8042 -2.0162 44 1 3.0295 -0.3775 -1.5326 45 1 2.3970 -2.9468 -1.2623 46 1 3.0284 -0.3791 1.5395 47 1 1.3583 -0.8212 2.0137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091875229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:14 Heat of formation + Delta-G solvation = -57.308660 kcal Electronic energy + Delta-G solvation = -29360.757533 eV Core-core repulsion = 25543.189422 eV Total energy + Delta-G solvation = -3817.568111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.34615 -41.07621 -39.63445 -37.55910 -36.58802 -34.76476 -33.59184 -32.37874 -31.58845 -29.57481 -27.92480 -27.57565 -27.37192 -26.61269 -24.54310 -22.85773 -22.13418 -21.59618 -20.35092 -19.70487 -18.75798 -18.57038 -17.67571 -17.09434 -16.99002 -16.79093 -16.27177 -15.75066 -15.63980 -15.55702 -15.16525 -14.98083 -14.91350 -14.47400 -14.22736 -13.97897 -13.77342 -13.52311 -13.42707 -13.30035 -13.13739 -13.07248 -12.94583 -12.72717 -12.65611 -12.35979 -12.27706 -12.14659 -11.95252 -11.81310 -11.46208 -11.39658 -11.29115 -11.09600 -10.82079 -10.72068 -10.19932 -9.66380 -8.89461 -7.73433 -5.20176 1.38123 1.45454 1.46835 1.47988 1.56037 1.87387 2.32379 2.48722 3.03381 3.17804 3.32214 3.45994 3.52622 3.64771 3.72596 3.84636 3.92504 3.98297 4.24420 4.30763 4.38807 4.43845 4.51702 4.58881 4.68896 4.71495 4.75509 4.79998 4.80197 4.84746 4.88093 4.94593 4.97763 5.09693 5.20101 5.23345 5.26458 5.36599 5.47433 5.55733 5.66263 5.69653 5.85589 5.89114 6.39897 6.51309 7.02446 7.12823 7.13413 7.78320 8.45434 9.24244 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.012434 B = 0.004889 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.285738 B = 5725.502246 C = 7220.922586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.082 4.082 3 C 0.547 3.453 4 O -0.573 6.573 5 N -0.604 5.604 6 C 0.108 3.892 7 C -0.109 4.109 8 H 0.103 0.897 9 C 0.150 3.850 10 N -0.620 5.620 11 C -0.232 4.232 12 H 0.076 0.924 13 C -0.063 4.063 14 N -0.943 5.943 15 Si 0.973 3.027 16 H -0.270 1.270 17 H -0.288 1.288 18 H -0.298 1.298 19 C 0.137 3.863 20 C -0.076 4.076 21 C -0.116 4.116 22 C 0.123 3.877 23 C 0.123 3.877 24 N -0.711 5.711 25 C 0.522 3.478 26 O -0.578 6.578 27 C -0.143 4.143 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.090 0.910 34 H -0.019 1.019 35 H 0.246 0.754 36 H 0.003 0.997 37 H 0.047 0.953 38 H 0.082 0.918 39 H 0.044 0.956 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.098 0.902 43 H 0.124 0.876 44 H 0.077 0.923 45 H 0.423 0.577 46 H 0.082 0.918 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.476 2.865 -16.068 19.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.085 4.085 3 C 0.336 3.664 4 O -0.453 6.453 5 N -0.335 5.335 6 C -0.014 4.014 7 C -0.129 4.129 8 H 0.121 0.879 9 C 0.025 3.975 10 N -0.344 5.344 11 C -0.361 4.361 12 H 0.094 0.906 13 C -0.256 4.256 14 N -0.593 5.593 15 Si 0.802 3.198 16 H -0.195 1.195 17 H -0.214 1.214 18 H -0.225 1.225 19 C 0.012 3.988 20 C -0.078 4.078 21 C -0.173 4.173 22 C 0.000 4.000 23 C -0.001 4.001 24 N -0.367 5.367 25 C 0.308 3.692 26 O -0.458 6.458 27 C -0.183 4.183 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.107 0.893 34 H -0.001 1.001 35 H 0.057 0.943 36 H 0.021 0.979 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.116 0.884 43 H 0.142 0.858 44 H 0.096 0.904 45 H 0.264 0.736 46 H 0.100 0.900 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.939 2.503 -16.014 19.554 hybrid contribution 1.441 -0.678 0.986 1.874 sum -9.498 1.825 -15.027 17.870 Atomic orbital electron populations 1.21987 0.88062 1.04520 1.04931 1.21604 1.00198 0.90716 0.96021 1.19959 0.79535 0.86371 0.80512 1.90677 1.39219 1.78007 1.37422 1.48410 1.49081 1.13140 1.22907 1.22537 0.94760 1.00592 0.83560 1.23050 0.98162 0.95574 0.96115 0.87884 1.21760 0.86098 0.89975 0.99706 1.45211 1.28943 1.42442 1.17806 1.19440 1.04444 1.16874 0.95308 0.90623 1.25485 1.00244 0.98709 1.01165 1.69846 1.30383 1.26796 1.32264 0.85081 0.78288 0.76895 0.79512 1.19456 1.21439 1.22536 1.21933 0.95151 0.93474 0.88260 1.22057 0.94948 0.97120 0.93667 1.21598 1.01879 0.92716 1.01125 1.22099 1.00799 0.82245 0.94853 1.22123 1.03036 0.79543 0.95415 1.46098 1.72785 1.11278 1.06498 1.20906 0.74520 0.90225 0.83511 1.90748 1.52247 1.38713 1.64107 1.22466 1.03919 0.92838 0.99072 0.89357 0.90098 0.90095 0.87282 0.90193 0.89258 1.00131 0.94339 0.97911 0.93508 0.89886 0.93650 0.91420 0.92018 0.88423 0.85841 0.90433 0.73558 0.89973 0.86412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.25 71.98 0.59 -1.30 16 2 C -0.08 -1.71 0.60 -51.87 -0.03 -1.74 16 3 C 0.55 14.76 6.57 87.66 0.58 15.33 16 4 O -0.57 -18.80 15.76 -3.05 -0.05 -18.84 16 5 N -0.60 -15.78 3.31 -814.57 -2.70 -18.48 16 6 C 0.11 2.57 4.51 86.62 0.39 2.96 16 7 C -0.11 -3.42 3.68 -9.53 -0.04 -3.46 16 8 H 0.10 2.99 7.88 -2.39 -0.02 2.97 16 9 C 0.15 6.84 5.73 86.50 0.50 7.34 16 10 N -0.62 -31.05 3.43 -690.73 -2.37 -33.42 16 11 C -0.23 -12.88 10.33 84.03 0.87 -12.01 16 12 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 13 C -0.06 -3.57 5.49 84.86 0.47 -3.10 16 14 N -0.94 -55.03 10.08 21.65 0.22 -54.81 16 15 Si 0.97 45.91 29.55 68.60 2.03 47.93 16 16 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 17 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 18 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 19 C 0.14 5.52 6.51 86.17 0.56 6.08 16 20 C -0.08 -2.26 1.08 -51.03 -0.06 -2.31 16 21 C -0.12 -2.74 8.43 71.98 0.61 -2.14 16 22 C 0.12 3.20 5.96 86.50 0.52 3.71 16 23 C 0.12 2.21 6.67 86.83 0.58 2.79 16 24 N -0.71 -14.28 6.24 -459.69 -2.87 -17.15 16 25 C 0.52 15.18 8.44 87.93 0.74 15.92 16 26 O -0.58 -22.27 18.03 -3.03 -0.05 -22.33 16 27 C -0.14 -3.89 4.86 30.62 0.15 -3.74 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.06 5.22 -2.39 -0.01 1.04 16 31 H 0.11 1.76 7.60 -2.39 -0.02 1.74 16 32 H 0.08 2.01 4.03 -2.39 -0.01 2.00 16 33 H 0.09 4.74 5.44 -2.39 -0.01 4.72 16 34 H -0.02 -0.95 7.42 -2.38 -0.02 -0.97 16 35 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 36 H 0.00 0.13 7.38 -2.38 -0.02 0.11 16 37 H 0.05 1.83 7.82 -2.38 -0.02 1.81 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.06 1.85 7.26 -2.39 -0.02 1.83 16 42 H 0.10 1.96 7.87 -2.39 -0.02 1.94 16 43 H 0.12 1.37 7.91 -2.39 -0.02 1.35 16 44 H 0.08 1.69 7.00 -2.39 -0.02 1.67 16 45 H 0.42 6.56 8.96 -92.71 -0.83 5.72 16 46 H 0.08 2.78 7.89 -2.39 -0.02 2.76 16 47 H 0.12 3.10 6.43 -2.38 -0.02 3.09 16 Total: -1.00 -76.05 357.78 0.80 -75.25 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.17 Total: 17.49 kcal Atomic # 6 Polarization: 17.93 SS G_CDS: 6.42 Total: 24.35 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -7.72 Total: -123.86 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -0.10 Total: -41.17 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -76.05 0.80 -75.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091875229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.944 kcal (2) G-P(sol) polarization free energy of solvation -76.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds