Wall clock time and date at job start Fri Apr 10 2020 18:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50698 * 110.85949 * 2 1 4 4 O 1.21287 * 120.00253 * 236.74430 * 3 2 1 5 5 N 1.34775 * 120.00055 * 56.75055 * 3 2 1 6 6 C 1.47191 * 126.70690 * 184.75112 * 5 3 2 7 7 C 1.53745 * 106.42810 * 211.34901 * 6 5 3 8 8 H 1.08998 * 112.28504 * 103.78605 * 7 6 5 9 9 C 1.54822 * 108.88299 * 229.55045 * 7 6 5 10 10 N 1.48337 * 104.14365 * 137.53843 * 9 7 6 11 11 C 1.36935 * 128.19863 * 138.19895 * 10 9 7 12 12 H 1.07998 * 119.99876 * 343.83353 * 11 10 9 13 13 C 1.38808 * 119.99810 * 164.11295 * 11 10 9 14 14 N 1.31614 * 120.00325 * 350.31073 * 13 11 10 15 15 Si 1.86803 * 119.99776 * 170.31436 * 13 11 10 16 16 H 1.48500 * 109.47314 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47037 * 119.99936 * 15 13 11 18 18 H 1.48503 * 109.47099 * 239.99656 * 15 13 11 19 19 C 1.48329 * 103.59820 * 317.93493 * 10 9 7 20 20 C 1.54450 * 104.32883 * 42.03657 * 19 10 9 21 21 C 1.52994 * 112.29994 * 96.98252 * 20 19 10 22 22 C 1.47198 * 126.69984 * 4.72010 * 5 3 2 23 23 C 1.54479 * 111.00197 * 123.81741 * 2 1 3 24 24 N 1.46759 * 105.47790 * 92.71527 * 23 2 1 25 25 C 1.34423 * 111.29947 * 17.01656 * 24 23 2 26 26 O 1.21280 * 124.94226 * 179.62895 * 25 24 23 27 27 C 1.51279 * 110.11698 * 359.59649 * 25 24 23 28 28 H 1.09003 * 109.47155 * 53.85681 * 1 2 3 29 29 H 1.08998 * 109.46978 * 173.85420 * 1 2 3 30 30 H 1.08999 * 109.47223 * 293.86311 * 1 2 3 31 31 H 1.08993 * 110.06638 * 92.10656 * 6 5 3 32 32 H 1.08999 * 110.11103 * 330.61116 * 6 5 3 33 33 H 1.08995 * 110.57723 * 18.87016 * 9 7 6 34 34 H 1.09001 * 110.51790 * 256.17541 * 9 7 6 35 35 H 0.97001 * 120.00447 * 180.02562 * 14 13 11 36 36 H 1.08997 * 110.46026 * 160.74787 * 19 10 9 37 37 H 1.08999 * 110.46627 * 283.19317 * 19 10 9 38 38 H 1.08996 * 109.47633 * 61.01862 * 21 20 19 39 39 H 1.09000 * 109.47541 * 181.01755 * 21 20 19 40 40 H 1.09005 * 109.47286 * 301.01395 * 21 20 19 41 41 H 1.08994 * 110.06764 * 29.41465 * 22 5 3 42 42 H 1.08998 * 110.06998 * 267.89249 * 22 5 3 43 43 H 1.09001 * 110.24783 * 211.71394 * 23 2 1 44 44 H 1.08997 * 110.24390 * 333.71294 * 23 2 1 45 45 H 0.97001 * 124.35462 * 197.00065 * 24 23 2 46 46 H 1.09002 * 110.48867 * 225.07307 * 27 25 24 47 47 H 1.08995 * 110.60188 * 102.47879 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0665 1.4082 0.0000 4 8 2.8207 1.7698 -0.8783 5 7 1.7085 2.2658 0.9761 6 6 2.0623 3.6916 1.0680 7 6 2.1571 4.0204 2.5668 8 1 3.1893 4.1009 2.9078 9 6 1.3269 5.2953 2.8537 10 7 0.6131 4.9864 4.1168 11 6 0.4065 5.8052 5.1947 12 1 0.9914 6.7059 5.3086 13 6 -0.5508 5.4746 6.1440 14 7 -1.3883 4.4850 5.9172 15 14 -0.6504 6.4344 7.7435 16 1 0.3954 7.4887 7.7542 17 1 -1.9901 7.0642 7.8602 18 1 -0.4353 5.5129 8.8880 19 6 0.1705 3.5826 3.9330 20 6 1.3839 2.8812 3.2840 21 6 2.2475 2.1464 4.3112 22 6 0.8867 1.9596 2.1583 23 6 2.0836 -0.8026 1.1982 24 7 2.2865 -2.1665 0.6957 25 6 2.2963 -2.1954 -0.6482 26 8 2.4524 -3.1927 -1.3204 27 6 2.0834 -0.8030 -1.2001 28 1 -0.3633 0.6061 -0.8299 29 1 -0.3633 -1.0217 -0.1100 30 1 -0.3633 0.4157 0.9398 31 1 1.2884 4.2998 0.6000 32 1 3.0224 3.8714 0.5842 33 1 0.6152 5.4781 2.0487 34 1 1.9822 6.1560 2.9870 35 1 -2.0575 4.2542 6.5804 36 1 -0.0628 3.1275 4.8956 37 1 -0.6954 3.5394 3.2723 38 1 1.6528 1.3753 4.8009 39 1 3.0972 1.6849 3.8080 40 1 2.6079 2.8554 5.0566 41 1 1.0172 0.9160 2.4444 42 1 -0.1633 2.1612 1.9463 43 1 3.0310 -0.3785 1.5309 44 1 1.3628 -0.8052 2.0158 45 1 2.3993 -2.9469 1.2607 46 1 1.3580 -0.8218 -2.0135 47 1 3.0270 -0.3773 -1.5413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091875230.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:17 Heat of formation + Delta-G solvation = -34.241082 kcal Electronic energy + Delta-G solvation = -28825.159445 eV Core-core repulsion = 25008.591620 eV Total energy + Delta-G solvation = -3816.567825 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.37315 -39.94263 -38.47230 -36.64543 -35.15225 -33.11064 -32.45306 -31.41321 -29.87521 -28.48546 -26.92932 -26.60594 -25.86023 -25.21286 -23.34283 -21.54765 -20.84656 -20.64721 -19.12478 -18.58968 -17.49427 -17.02244 -16.67987 -16.11574 -15.75930 -15.29554 -14.90662 -14.72101 -14.58218 -14.39348 -14.04368 -13.78925 -13.65437 -13.48500 -13.04741 -12.85524 -12.77451 -12.58009 -12.34269 -12.12958 -11.79893 -11.75638 -11.49746 -11.43770 -11.37149 -10.98687 -10.88034 -10.77006 -10.28133 -10.15269 -10.11844 -10.07649 -9.96547 -9.78328 -9.62780 -9.43244 -8.78309 -8.61663 -6.96264 -5.89335 -3.23553 2.34731 2.44765 2.87392 3.09218 3.31002 3.38381 3.39860 3.90455 4.00397 4.32078 4.37972 4.48806 4.67089 4.71570 4.96819 5.02769 5.15427 5.16387 5.30963 5.36937 5.41025 5.41523 5.49859 5.51686 5.57835 5.66298 5.70521 5.76097 5.83845 5.86291 6.00940 6.07212 6.18294 6.23933 6.35981 6.46819 6.55258 6.58231 6.65653 6.69280 6.84337 7.13977 7.41269 7.54592 7.61959 7.97071 8.05331 8.10052 9.00757 9.63975 10.41285 11.24525 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.025729 B = 0.003210 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.995156 B = 8721.901659 C = 9220.568822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C 0.546 3.454 4 O -0.541 6.541 5 N -0.607 5.607 6 C 0.112 3.888 7 C -0.108 4.108 8 H 0.084 0.916 9 C 0.131 3.869 10 N -0.593 5.593 11 C -0.225 4.225 12 H 0.077 0.923 13 C -0.004 4.004 14 N -0.915 5.915 15 Si 0.910 3.090 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.289 1.289 19 C 0.167 3.833 20 C -0.096 4.096 21 C -0.118 4.118 22 C 0.105 3.895 23 C 0.113 3.887 24 N -0.729 5.729 25 C 0.524 3.476 26 O -0.535 6.535 27 C -0.138 4.138 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.028 0.972 34 H 0.049 0.951 35 H 0.254 0.746 36 H 0.092 0.908 37 H 0.024 0.976 38 H 0.053 0.947 39 H 0.041 0.959 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.412 0.588 46 H 0.108 0.892 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.608 -9.260 -7.702 12.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.095 4.095 3 C 0.333 3.667 4 O -0.418 6.418 5 N -0.338 5.338 6 C -0.011 4.011 7 C -0.129 4.129 8 H 0.103 0.897 9 C 0.004 3.996 10 N -0.315 5.315 11 C -0.353 4.353 12 H 0.094 0.906 13 C -0.201 4.201 14 N -0.561 5.561 15 Si 0.740 3.260 16 H -0.204 1.204 17 H -0.217 1.217 18 H -0.216 1.216 19 C 0.041 3.959 20 C -0.099 4.099 21 C -0.175 4.175 22 C -0.018 4.018 23 C -0.012 4.012 24 N -0.385 5.385 25 C 0.311 3.689 26 O -0.412 6.412 27 C -0.178 4.178 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.110 0.890 37 H 0.041 0.959 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.251 0.749 46 H 0.126 0.874 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.942 -9.474 -8.437 13.615 hybrid contribution -0.182 0.260 1.217 1.258 sum 4.760 -9.214 -7.220 12.637 Atomic orbital electron populations 1.21959 0.90624 1.03353 1.04168 1.21638 0.98401 0.92784 0.96674 1.19560 0.80480 0.85722 0.80904 1.90700 1.36010 1.77970 1.37136 1.48565 1.51444 1.10830 1.23009 1.22206 1.01142 0.80426 0.97282 1.23166 1.00054 0.97438 0.92236 0.89721 1.21935 0.93726 0.93866 0.90108 1.45064 1.63850 1.09602 1.13018 1.19022 1.14722 1.03902 0.97616 0.90569 1.24862 0.96384 0.99122 0.99762 1.69871 1.20241 1.31285 1.34704 0.86084 0.77447 0.79085 0.83361 1.20384 1.21713 1.21619 1.21771 0.89515 0.84770 0.99877 1.22562 0.98974 0.94116 0.94235 1.21558 0.98039 0.99758 0.98178 1.22565 0.95076 0.99681 0.84451 1.22201 1.01785 0.81458 0.95753 1.46200 1.74444 1.10136 1.07753 1.20858 0.74734 0.90806 0.82541 1.90759 1.50245 1.37374 1.62785 1.22385 1.05577 0.92087 0.97765 0.91132 0.91169 0.90374 0.91067 0.90720 0.95394 0.93218 0.93619 0.88995 0.95855 0.92790 0.94011 0.91656 0.90895 0.90489 0.90346 0.88793 0.74862 0.87357 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.17 37.15 0.30 -0.90 16 2 C -0.09 -0.89 0.60 -154.03 -0.09 -0.98 16 3 C 0.55 6.96 6.57 -10.99 -0.07 6.89 16 4 O -0.54 -8.62 15.72 5.55 0.09 -8.53 16 5 N -0.61 -7.69 3.30 -171.66 -0.57 -8.26 16 6 C 0.11 1.53 6.56 -3.28 -0.02 1.51 16 7 C -0.11 -1.64 3.76 -88.08 -0.33 -1.97 16 8 H 0.08 1.26 7.93 -51.93 -0.41 0.85 16 9 C 0.13 2.40 6.77 -2.07 -0.01 2.38 16 10 N -0.59 -13.52 3.37 -168.25 -0.57 -14.09 16 11 C -0.22 -5.77 10.37 -15.06 -0.16 -5.92 16 12 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 13 C 0.00 -0.11 5.40 -17.43 -0.09 -0.20 16 14 N -0.91 -24.76 10.88 55.49 0.60 -24.16 16 15 Si 0.91 20.73 29.56 -169.99 -5.03 15.70 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 C 0.17 3.40 5.11 -2.27 -0.01 3.39 16 20 C -0.10 -1.46 1.08 -152.17 -0.16 -1.63 16 21 C -0.12 -1.66 8.61 37.15 0.32 -1.34 16 22 C 0.10 1.28 4.38 -3.27 -0.01 1.27 16 23 C 0.11 0.93 5.78 -3.12 -0.02 0.91 16 24 N -0.73 -6.35 6.24 -59.21 -0.37 -6.72 16 25 C 0.52 6.09 8.43 -10.86 -0.09 6.00 16 26 O -0.53 -8.25 18.03 5.56 0.10 -8.15 16 27 C -0.14 -1.44 5.76 -26.74 -0.15 -1.60 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.63 5.42 -51.93 -0.28 0.35 16 31 H 0.07 0.98 7.10 -51.93 -0.37 0.61 16 32 H 0.07 1.02 7.88 -51.93 -0.41 0.61 16 33 H 0.03 0.52 7.18 -51.93 -0.37 0.14 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 36 H 0.09 2.15 6.22 -51.93 -0.32 1.82 16 37 H 0.02 0.50 7.17 -51.93 -0.37 0.13 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 0.72 4.47 -51.93 -0.23 0.49 16 42 H 0.08 0.97 6.51 -51.93 -0.34 0.64 16 43 H 0.08 0.68 7.88 -51.93 -0.41 0.27 16 44 H 0.09 0.62 6.42 -51.93 -0.33 0.29 16 45 H 0.41 2.87 8.96 -40.82 -0.37 2.50 16 46 H 0.11 1.03 7.91 -51.93 -0.41 0.62 16 47 H 0.12 1.42 6.97 -51.93 -0.36 1.06 16 LS Contribution 358.82 15.07 5.41 5.41 Total: -1.00 -31.31 358.82 -8.02 -39.33 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.07 Total: 1.66 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -0.61 Total: 7.81 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.90 Total: -53.22 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.19 Total: -16.68 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.31 -8.02 -39.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091875230.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.088 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds