Wall clock time and date at job start Fri Apr 10 2020 18:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34419 * 124.35009 * 2 1 4 4 O 1.21283 * 124.94115 * 0.37172 * 3 2 1 5 5 C 1.51286 * 110.11557 * 180.38847 * 3 2 1 6 6 C 1.54631 * 104.19129 * 16.25300 * 5 3 2 7 7 C 1.46765 * 124.34715 * 179.97438 * 2 1 3 8 8 H 1.09006 * 110.24412 * 282.09080 * 7 2 1 9 9 C 1.50697 * 110.24574 * 43.99922 * 7 2 1 10 10 O 1.21276 * 120.00170 * 18.55000 * 9 7 2 11 11 N 1.34776 * 119.99980 * 198.54287 * 9 7 2 12 12 C 1.47200 * 126.70454 * 359.96780 * 11 9 7 13 13 C 1.53740 * 106.42949 * 211.40038 * 12 11 9 14 14 H 1.09009 * 112.28427 * 103.78557 * 13 12 11 15 15 C 1.54872 * 108.86053 * 229.56606 * 13 12 11 16 16 N 1.48330 * 104.11471 * 137.56485 * 15 13 12 17 17 C 1.36941 * 128.20240 * 138.15983 * 16 15 13 18 18 H 1.07993 * 120.00232 * 195.81319 * 17 16 15 19 19 C 1.38819 * 119.99612 * 15.81621 * 17 16 15 20 20 N 1.31624 * 120.00081 * 9.21987 * 19 17 16 21 21 Si 1.86797 * 119.99774 * 189.22007 * 19 17 16 22 22 H 1.48511 * 109.47146 * 84.99916 * 21 19 17 23 23 H 1.48496 * 109.47321 * 325.00033 * 21 19 17 24 24 H 1.48496 * 109.47249 * 204.99704 * 21 19 17 25 25 C 1.48337 * 103.60214 * 317.89543 * 16 15 13 26 26 C 1.54443 * 104.32085 * 42.06977 * 25 16 15 27 27 C 1.53007 * 112.30047 * 97.55377 * 26 25 16 28 28 C 1.47192 * 126.70561 * 180.02562 * 11 9 7 29 29 H 1.09006 * 109.47239 * 270.02400 * 1 2 3 30 30 H 1.09009 * 109.47336 * 30.02008 * 1 2 3 31 31 H 1.09001 * 109.47582 * 150.02099 * 1 2 3 32 32 H 1.08999 * 110.48647 * 134.92924 * 5 3 2 33 33 H 1.09003 * 110.48305 * 257.44596 * 5 3 2 34 34 H 1.09004 * 110.96559 * 217.07895 * 6 5 3 35 35 H 1.08999 * 110.96926 * 93.32677 * 6 5 3 36 36 H 1.09006 * 110.05955 * 330.63975 * 12 11 9 37 37 H 1.08993 * 110.06829 * 92.10211 * 12 11 9 38 38 H 1.08993 * 110.59288 * 18.90339 * 15 13 12 39 39 H 1.09008 * 110.53098 * 256.18790 * 15 13 12 40 40 H 0.96991 * 119.99732 * 180.02562 * 20 19 17 41 41 H 1.08996 * 110.46067 * 160.78069 * 25 16 15 42 42 H 1.09001 * 110.46245 * 283.35764 * 25 16 15 43 43 H 1.09005 * 109.46823 * 61.01501 * 27 26 25 44 44 H 1.09000 * 109.47336 * 181.00888 * 27 26 25 45 45 H 1.08998 * 109.47165 * 301.01104 * 27 26 25 46 46 H 1.09000 * 110.06253 * 29.35758 * 28 11 9 47 47 H 1.09003 * 110.11300 * 267.86685 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7945 2.2442 0.0065 5 6 3.6898 0.7378 -0.0096 6 6 3.7010 -0.7488 -0.4350 7 6 2.2930 -1.2117 0.0005 8 1 2.3289 -1.6436 1.0008 9 6 1.7475 -2.2166 -0.9811 10 8 0.9879 -1.8587 -1.8562 11 7 2.1039 -3.5129 -0.8867 12 6 3.0105 -4.1058 0.1099 13 6 3.7126 -5.2828 -0.5867 14 1 4.7392 -5.0451 -0.8659 15 6 3.6085 -6.5348 0.3190 16 7 3.2860 -7.6357 -0.6214 17 6 3.7907 -8.9085 -0.6403 18 1 3.6676 -9.5253 -1.5182 19 6 4.4606 -9.4060 0.4692 20 7 4.4551 -8.7305 1.5989 21 14 5.3698 -11.0340 0.3587 22 1 6.7330 -10.8039 -0.1837 23 1 4.6285 -11.9551 -0.5397 24 1 5.4709 -11.6373 1.7119 25 6 2.2824 -7.0333 -1.5326 26 6 2.8264 -5.6161 -1.8169 27 6 3.5924 -5.5427 -3.1394 28 6 1.6635 -4.6123 -1.7608 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8899 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 4.2328 1.3457 -0.7332 33 1 4.1197 0.8553 0.9851 34 1 4.4753 -1.3011 0.0977 35 1 3.8272 -0.8451 -1.5133 36 1 3.7464 -3.3685 0.4313 37 1 2.4410 -4.4636 0.9676 38 1 2.8104 -6.4130 1.0512 39 1 4.5587 -6.7259 0.8178 40 1 4.9234 -9.0780 2.3739 41 1 2.2135 -7.6075 -2.4565 42 1 1.3095 -6.9772 -1.0443 43 1 2.9249 -5.8031 -3.9608 44 1 3.9699 -4.5306 -3.2850 45 1 4.4281 -6.2421 -3.1145 46 1 1.4487 -4.2327 -2.7597 47 1 0.7770 -5.0904 -1.3441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091945432.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:27 Heat of formation + Delta-G solvation = -25.392376 kcal Electronic energy + Delta-G solvation = -28450.685914 eV Core-core repulsion = 24634.501798 eV Total energy + Delta-G solvation = -3816.184117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.19058 -39.96933 -38.40049 -36.30799 -35.15993 -33.15458 -32.70135 -31.03955 -30.02829 -28.86228 -26.81797 -26.50444 -25.59404 -25.20412 -23.01955 -22.21324 -20.63884 -20.10818 -19.20975 -18.57502 -17.69168 -16.79628 -16.69514 -16.09198 -15.93727 -15.63945 -14.92342 -14.66658 -14.44086 -14.12576 -14.09767 -13.75513 -13.62142 -13.47868 -12.99962 -12.91549 -12.79486 -12.50448 -12.28547 -12.14050 -12.04342 -11.76724 -11.71471 -11.45889 -11.39823 -11.07875 -10.90099 -10.74016 -10.35990 -10.21173 -10.11878 -10.05758 -9.92584 -9.80205 -9.77739 -8.90721 -8.77457 -8.61556 -6.96046 -5.88836 -3.23530 2.31072 2.37510 2.65416 3.06332 3.32136 3.38218 3.39212 3.99439 4.06135 4.29490 4.38205 4.60031 4.65216 4.76209 4.89597 5.02640 5.12471 5.18809 5.28321 5.37528 5.39807 5.40867 5.48277 5.49276 5.56375 5.58242 5.61348 5.71426 5.82952 5.93523 5.96370 6.02317 6.16780 6.18803 6.24821 6.32753 6.45923 6.56516 6.64966 6.78813 6.84906 7.16826 7.40442 7.51088 7.61282 7.90753 8.04459 8.10219 9.01020 9.64111 10.41487 11.24947 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.025846 B = 0.002985 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.073475 B = 9377.682846 C = 9780.094249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.600 5.600 3 C 0.519 3.481 4 O -0.533 6.533 5 C -0.153 4.153 6 C -0.120 4.120 7 C 0.116 3.884 8 H 0.106 0.894 9 C 0.523 3.477 10 O -0.536 6.536 11 N -0.607 5.607 12 C 0.102 3.898 13 C -0.116 4.116 14 H 0.085 0.915 15 C 0.162 3.838 16 N -0.592 5.592 17 C -0.226 4.226 18 H 0.076 0.924 19 C -0.004 4.004 20 N -0.916 5.916 21 Si 0.912 3.088 22 H -0.287 1.287 23 H -0.281 1.281 24 H -0.290 1.290 25 C 0.136 3.864 26 C -0.086 4.086 27 C -0.120 4.120 28 C 0.117 3.883 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.025 0.975 39 H 0.091 0.909 40 H 0.255 0.745 41 H 0.050 0.950 42 H 0.027 0.973 43 H 0.051 0.949 44 H 0.046 0.954 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.177 13.427 -2.260 13.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.334 5.334 3 C 0.307 3.693 4 O -0.409 6.409 5 C -0.193 4.193 6 C -0.158 4.158 7 C 0.008 3.992 8 H 0.123 0.877 9 C 0.310 3.690 10 O -0.414 6.414 11 N -0.340 5.340 12 C -0.021 4.021 13 C -0.137 4.137 14 H 0.103 0.897 15 C 0.036 3.964 16 N -0.315 5.315 17 C -0.354 4.354 18 H 0.094 0.906 19 C -0.201 4.201 20 N -0.562 5.562 21 Si 0.742 3.258 22 H -0.214 1.214 23 H -0.206 1.206 24 H -0.217 1.217 25 C 0.009 3.991 26 C -0.089 4.089 27 C -0.177 4.177 28 C -0.005 4.005 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.043 0.957 39 H 0.109 0.891 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.828 14.095 -2.572 14.443 hybrid contribution 0.382 -1.044 0.125 1.119 sum -1.446 13.050 -2.447 13.356 Atomic orbital electron populations 1.21684 0.77357 1.04420 1.01394 1.47854 1.06843 1.05733 1.72926 1.20853 0.89271 0.84133 0.75024 1.90723 1.78764 1.20823 1.50616 1.22363 0.94760 0.96991 1.05147 1.22602 0.94137 0.95488 1.03570 1.21627 0.91867 0.86071 0.99657 0.87685 1.20181 0.81633 0.81549 0.85676 1.90700 1.36186 1.78597 1.35886 1.48666 1.46727 1.06294 1.32315 1.22449 0.92253 0.95758 0.91664 1.23341 0.98056 0.96124 0.96155 0.89713 1.21838 1.01408 0.82954 0.90206 1.45050 1.44352 1.08996 1.33080 1.18978 1.29809 0.88333 0.98239 0.90602 1.24880 1.01850 0.98495 0.94918 1.69859 1.46145 1.39307 1.00869 0.86151 0.79860 0.83003 0.76809 1.21437 1.20630 1.21656 1.21879 0.92123 0.90415 0.94717 1.22371 0.94430 0.96520 0.95579 1.21578 1.00161 1.00964 0.94991 1.22222 0.97171 0.86353 0.94797 0.92820 0.90671 0.89696 0.87545 0.87238 0.87845 0.89291 0.91028 0.90502 0.95705 0.89112 0.93535 0.93141 0.95538 0.93018 0.93532 0.91646 0.90707 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.07 10.43 59.84 0.62 1.69 16 2 N -0.60 -7.13 3.00 -174.02 -0.52 -7.65 16 3 C 0.52 6.47 8.02 -10.86 -0.09 6.38 16 4 O -0.53 -8.59 17.60 5.56 0.10 -8.49 16 5 C -0.15 -1.22 6.86 -26.74 -0.18 -1.41 16 6 C -0.12 -0.93 6.37 -25.10 -0.16 -1.09 16 7 C 0.12 1.17 2.88 -68.16 -0.20 0.97 16 8 H 0.11 0.88 7.67 -51.93 -0.40 0.48 16 9 C 0.52 6.82 6.58 -10.99 -0.07 6.74 16 10 O -0.54 -8.74 14.82 5.56 0.08 -8.65 16 11 N -0.61 -7.83 3.32 -171.67 -0.57 -8.40 16 12 C 0.10 1.24 6.15 -3.28 -0.02 1.22 16 13 C -0.12 -1.78 3.77 -88.06 -0.33 -2.12 16 14 H 0.08 1.28 7.95 -51.92 -0.41 0.87 16 15 C 0.16 3.34 5.51 -2.05 -0.01 3.33 16 16 N -0.59 -13.59 3.37 -168.22 -0.57 -14.15 16 17 C -0.23 -5.81 10.37 -15.05 -0.16 -5.97 16 18 H 0.08 1.91 7.84 -52.49 -0.41 1.50 16 19 C 0.00 -0.11 5.40 -17.43 -0.09 -0.21 16 20 N -0.92 -24.93 10.87 55.49 0.60 -24.32 16 21 Si 0.91 20.79 29.56 -169.99 -5.03 15.77 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.14 2.51 6.38 -2.27 -0.01 2.50 16 26 C -0.09 -1.31 1.08 -152.19 -0.16 -1.47 16 27 C -0.12 -1.67 8.61 37.16 0.32 -1.35 16 28 C 0.12 1.64 6.21 -3.29 -0.02 1.62 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.90 7.93 -51.92 -0.41 0.49 16 31 H 0.08 1.05 5.98 -51.93 -0.31 0.74 16 32 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.56 7.57 -51.93 -0.39 0.17 16 35 H 0.09 0.77 7.91 -51.93 -0.41 0.36 16 36 H 0.07 0.67 6.58 -51.93 -0.34 0.33 16 37 H 0.08 0.98 7.10 -51.93 -0.37 0.61 16 38 H 0.03 0.54 7.18 -51.93 -0.37 0.16 16 39 H 0.09 2.14 6.44 -51.92 -0.33 1.80 16 40 H 0.25 6.76 8.31 -40.82 -0.34 6.43 16 41 H 0.05 0.92 7.91 -51.93 -0.41 0.51 16 42 H 0.03 0.50 7.17 -51.93 -0.37 0.13 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.07 1.06 7.61 -51.93 -0.40 0.67 16 47 H 0.07 1.01 7.10 -51.93 -0.37 0.64 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -32.02 365.58 -8.34 -40.36 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.38 Total: -0.81 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: -0.57 Total: 10.84 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -1.06 Total: -54.52 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: 0.18 Total: -17.15 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.02 -8.34 -40.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091945432.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.968 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds