Wall clock time and date at job start Fri Apr 10 2020 18:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34419 * 124.35009 * 2 1 4 4 O 1.21283 * 124.94115 * 0.37172 * 3 2 1 5 5 C 1.51286 * 110.11557 * 180.38847 * 3 2 1 6 6 C 1.54631 * 104.19129 * 16.25300 * 5 3 2 7 7 C 1.46765 * 124.34715 * 179.97438 * 2 1 3 8 8 H 1.09006 * 110.24412 * 282.09080 * 7 2 1 9 9 C 1.50697 * 110.24574 * 43.99922 * 7 2 1 10 10 O 1.21276 * 120.00170 * 18.55000 * 9 7 2 11 11 N 1.34776 * 119.99980 * 198.54287 * 9 7 2 12 12 C 1.47200 * 126.70454 * 359.96780 * 11 9 7 13 13 C 1.53740 * 106.42949 * 211.40038 * 12 11 9 14 14 H 1.09009 * 112.28427 * 103.78557 * 13 12 11 15 15 C 1.54872 * 108.86053 * 229.56606 * 13 12 11 16 16 N 1.48330 * 104.11471 * 137.56485 * 15 13 12 17 17 C 1.36941 * 128.20240 * 138.15983 * 16 15 13 18 18 H 1.07993 * 120.00232 * 195.81319 * 17 16 15 19 19 C 1.38819 * 119.99612 * 15.81621 * 17 16 15 20 20 N 1.31624 * 120.00081 * 9.21987 * 19 17 16 21 21 Si 1.86797 * 119.99774 * 189.22007 * 19 17 16 22 22 H 1.48511 * 109.47146 * 84.99916 * 21 19 17 23 23 H 1.48496 * 109.47321 * 325.00033 * 21 19 17 24 24 H 1.48496 * 109.47249 * 204.99704 * 21 19 17 25 25 C 1.48337 * 103.60214 * 317.89543 * 16 15 13 26 26 C 1.54443 * 104.32085 * 42.06977 * 25 16 15 27 27 C 1.53007 * 112.30047 * 97.55377 * 26 25 16 28 28 C 1.47192 * 126.70561 * 180.02562 * 11 9 7 29 29 H 1.09006 * 109.47239 * 270.02400 * 1 2 3 30 30 H 1.09009 * 109.47336 * 30.02008 * 1 2 3 31 31 H 1.09001 * 109.47582 * 150.02099 * 1 2 3 32 32 H 1.08999 * 110.48647 * 134.92924 * 5 3 2 33 33 H 1.09003 * 110.48305 * 257.44596 * 5 3 2 34 34 H 1.09004 * 110.96559 * 217.07895 * 6 5 3 35 35 H 1.08999 * 110.96926 * 93.32677 * 6 5 3 36 36 H 1.09006 * 110.05955 * 330.63975 * 12 11 9 37 37 H 1.08993 * 110.06829 * 92.10211 * 12 11 9 38 38 H 1.08993 * 110.59288 * 18.90339 * 15 13 12 39 39 H 1.09008 * 110.53098 * 256.18790 * 15 13 12 40 40 H 0.96991 * 119.99732 * 180.02562 * 20 19 17 41 41 H 1.08996 * 110.46067 * 160.78069 * 25 16 15 42 42 H 1.09001 * 110.46245 * 283.35764 * 25 16 15 43 43 H 1.09005 * 109.46823 * 61.01501 * 27 26 25 44 44 H 1.09000 * 109.47336 * 181.00888 * 27 26 25 45 45 H 1.08998 * 109.47165 * 301.01104 * 27 26 25 46 46 H 1.09000 * 110.06253 * 29.35758 * 28 11 9 47 47 H 1.09003 * 110.11300 * 267.86685 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7945 2.2442 0.0065 5 6 3.6898 0.7378 -0.0096 6 6 3.7010 -0.7488 -0.4350 7 6 2.2930 -1.2117 0.0005 8 1 2.3289 -1.6436 1.0008 9 6 1.7475 -2.2166 -0.9811 10 8 0.9879 -1.8587 -1.8562 11 7 2.1039 -3.5129 -0.8867 12 6 3.0105 -4.1058 0.1099 13 6 3.7126 -5.2828 -0.5867 14 1 4.7392 -5.0451 -0.8659 15 6 3.6085 -6.5348 0.3190 16 7 3.2860 -7.6357 -0.6214 17 6 3.7907 -8.9085 -0.6403 18 1 3.6676 -9.5253 -1.5182 19 6 4.4606 -9.4060 0.4692 20 7 4.4551 -8.7305 1.5989 21 14 5.3698 -11.0340 0.3587 22 1 6.7330 -10.8039 -0.1837 23 1 4.6285 -11.9551 -0.5397 24 1 5.4709 -11.6373 1.7119 25 6 2.2824 -7.0333 -1.5326 26 6 2.8264 -5.6161 -1.8169 27 6 3.5924 -5.5427 -3.1394 28 6 1.6635 -4.6123 -1.7608 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8899 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 4.2328 1.3457 -0.7332 33 1 4.1197 0.8553 0.9851 34 1 4.4753 -1.3011 0.0977 35 1 3.8272 -0.8451 -1.5133 36 1 3.7464 -3.3685 0.4313 37 1 2.4410 -4.4636 0.9676 38 1 2.8104 -6.4130 1.0512 39 1 4.5587 -6.7259 0.8178 40 1 4.9234 -9.0780 2.3739 41 1 2.2135 -7.6075 -2.4565 42 1 1.3095 -6.9772 -1.0443 43 1 2.9249 -5.8031 -3.9608 44 1 3.9699 -4.5306 -3.2850 45 1 4.4281 -6.2421 -3.1145 46 1 1.4487 -4.2327 -2.7597 47 1 0.7770 -5.0904 -1.3441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091945432.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:26 Heat of formation + Delta-G solvation = -46.025582 kcal Electronic energy + Delta-G solvation = -28451.580637 eV Core-core repulsion = 24634.501798 eV Total energy + Delta-G solvation = -3817.078840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.14425 -41.09778 -39.57389 -37.29948 -36.57921 -34.49380 -33.71107 -32.52897 -31.47226 -29.79626 -27.91708 -27.66186 -26.97260 -26.57330 -24.19467 -23.18710 -22.18050 -21.10491 -20.27577 -19.73749 -18.72553 -18.43232 -17.65497 -17.15922 -16.90560 -16.78334 -16.58353 -15.86824 -15.67754 -15.43768 -15.08665 -14.98518 -14.79877 -14.54537 -14.15937 -13.96249 -13.73289 -13.54871 -13.45211 -13.22965 -13.15573 -13.01453 -12.94208 -12.83619 -12.67171 -12.51729 -12.22989 -12.07911 -11.85692 -11.74257 -11.54368 -11.38677 -11.33125 -11.10712 -10.90372 -10.66445 -9.87309 -9.68323 -8.81260 -7.85855 -5.20579 1.36148 1.42766 1.50792 1.51290 1.58949 1.74212 2.12683 2.52531 3.17313 3.28926 3.34138 3.49360 3.51517 3.69842 3.95530 3.96964 3.98975 4.04500 4.25620 4.29386 4.30615 4.37571 4.39298 4.58028 4.62051 4.69807 4.76509 4.78508 4.81050 4.85011 4.95625 4.97711 5.01223 5.03490 5.06947 5.18091 5.27533 5.29514 5.34436 5.45993 5.51366 5.64888 5.78570 5.98446 6.26076 6.48457 6.95282 7.07010 7.08409 7.74479 8.54056 9.26633 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.025846 B = 0.002985 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.073475 B = 9377.682846 C = 9780.094249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.606 5.606 3 C 0.506 3.494 4 O -0.581 6.581 5 C -0.141 4.141 6 C -0.113 4.113 7 C 0.115 3.885 8 H 0.133 0.867 9 C 0.525 3.475 10 O -0.572 6.572 11 N -0.603 5.603 12 C 0.108 3.892 13 C -0.104 4.104 14 H 0.095 0.905 15 C 0.168 3.832 16 N -0.618 5.618 17 C -0.234 4.234 18 H 0.074 0.926 19 C -0.056 4.056 20 N -0.941 5.941 21 Si 0.970 3.030 22 H -0.284 1.284 23 H -0.274 1.274 24 H -0.296 1.296 25 C 0.133 3.867 26 C -0.076 4.076 27 C -0.113 4.113 28 C 0.122 3.878 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.074 0.926 38 H 0.009 0.991 39 H 0.058 0.942 40 H 0.249 0.751 41 H 0.049 0.951 42 H 0.024 0.976 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.075 0.925 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.178 14.297 -2.349 14.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.339 5.339 3 C 0.297 3.703 4 O -0.461 6.461 5 C -0.180 4.180 6 C -0.150 4.150 7 C 0.008 3.992 8 H 0.151 0.849 9 C 0.313 3.687 10 O -0.452 6.452 11 N -0.335 5.335 12 C -0.014 4.014 13 C -0.125 4.125 14 H 0.113 0.887 15 C 0.042 3.958 16 N -0.341 5.341 17 C -0.363 4.363 18 H 0.092 0.908 19 C -0.250 4.250 20 N -0.589 5.589 21 Si 0.799 3.201 22 H -0.211 1.211 23 H -0.200 1.200 24 H -0.223 1.223 25 C 0.007 3.993 26 C -0.078 4.078 27 C -0.171 4.171 28 C -0.001 4.001 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.135 0.865 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.100 0.900 36 H 0.132 0.868 37 H 0.092 0.908 38 H 0.027 0.973 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.041 0.959 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.474 14.952 -2.679 15.198 hybrid contribution -0.148 -1.353 0.108 1.366 sum -0.622 13.599 -2.571 13.854 Atomic orbital electron populations 1.21640 0.77950 1.03238 1.02117 1.48067 1.06986 1.06556 1.72295 1.21703 0.91285 0.83447 0.73905 1.90693 1.79962 1.22632 1.52800 1.22413 0.91339 0.97117 1.07140 1.22720 0.93211 0.95436 1.03674 1.21886 0.92622 0.84634 1.00047 0.84928 1.20700 0.80842 0.81589 0.85548 1.90697 1.37827 1.79082 1.37589 1.48611 1.46708 1.06128 1.32083 1.22396 0.92730 0.95550 0.90706 1.23146 0.99196 0.94981 0.95161 0.88681 1.21695 0.98962 0.84690 0.90485 1.45328 1.45632 1.08910 1.34227 1.19269 1.29295 0.89667 0.98065 0.90776 1.25562 1.03152 1.01471 0.94839 1.70024 1.47162 1.40538 1.01203 0.85223 0.78762 0.79788 0.76296 1.21129 1.19963 1.22304 1.22017 0.91276 0.92241 0.93749 1.22223 0.94829 0.94485 0.96297 1.21522 0.99570 1.01528 0.94449 1.22050 0.96349 0.86474 0.95213 0.91143 0.91958 0.90721 0.86493 0.84421 0.84237 0.90017 0.86819 0.90777 0.97288 0.92386 0.94174 0.93211 0.95855 0.91992 0.91813 0.93306 0.90616 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.08 10.43 127.77 1.33 3.41 16 2 N -0.61 -13.27 3.00 -823.05 -2.47 -15.74 16 3 C 0.51 11.73 8.02 87.90 0.71 12.43 16 4 O -0.58 -18.55 17.60 -3.04 -0.05 -18.60 16 5 C -0.14 -1.71 6.86 30.59 0.21 -1.50 16 6 C -0.11 -1.23 6.37 31.65 0.20 -1.02 16 7 C 0.12 1.92 2.88 44.70 0.13 2.05 16 8 H 0.13 1.55 7.67 -2.38 -0.02 1.54 16 9 C 0.52 12.30 6.58 87.66 0.58 12.88 16 10 O -0.57 -17.87 14.82 -3.02 -0.04 -17.91 16 11 N -0.60 -13.81 3.32 -815.44 -2.71 -16.52 16 12 C 0.11 2.28 6.15 86.49 0.53 2.81 16 13 C -0.10 -2.99 3.77 -9.14 -0.03 -3.02 16 14 H 0.09 2.59 7.95 -2.38 -0.02 2.57 16 15 C 0.17 6.89 5.51 86.67 0.48 7.37 16 16 N -0.62 -28.55 3.37 -686.11 -2.31 -30.86 16 17 C -0.23 -12.19 10.37 84.03 0.87 -11.32 16 18 H 0.07 3.77 7.84 -2.91 -0.02 3.75 16 19 C -0.06 -2.97 5.40 84.86 0.46 -2.51 16 20 N -0.94 -52.21 10.87 21.65 0.24 -51.97 16 21 Si 0.97 43.08 29.56 68.60 2.03 45.11 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 25 C 0.13 4.89 6.38 86.52 0.55 5.44 16 26 C -0.08 -2.17 1.08 -50.68 -0.05 -2.23 16 27 C -0.11 -2.92 8.61 71.98 0.62 -2.30 16 28 C 0.12 3.19 6.21 86.49 0.54 3.73 16 29 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.06 1.53 7.93 -2.38 -0.02 1.51 16 31 H 0.07 1.83 5.98 -2.39 -0.01 1.81 16 32 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.14 0.96 8.14 -2.39 -0.02 0.95 16 34 H 0.14 0.58 7.57 -2.38 -0.02 0.57 16 35 H 0.08 1.07 7.91 -2.39 -0.02 1.05 16 36 H 0.11 1.49 6.58 -2.38 -0.02 1.48 16 37 H 0.07 1.68 7.10 -2.39 -0.02 1.66 16 38 H 0.01 0.40 7.18 -2.39 -0.02 0.38 16 39 H 0.06 2.77 6.44 -2.38 -0.02 2.75 16 40 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 41 H 0.05 1.80 7.91 -2.39 -0.02 1.78 16 42 H 0.02 0.88 7.17 -2.39 -0.02 0.86 16 43 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.08 2.00 7.61 -2.39 -0.02 1.98 16 47 H 0.06 1.78 7.10 -2.39 -0.02 1.76 16 Total: -1.00 -72.47 365.58 2.76 -69.71 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.97 Total: 10.58 kcal Atomic # 6 Polarization: 19.09 SS G_CDS: 7.11 Total: 26.21 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -7.25 Total: -115.09 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -0.10 Total: -36.52 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -72.47 2.76 -69.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091945432.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.689 kcal (2) G-P(sol) polarization free energy of solvation -72.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds