Wall clock time and date at job start Fri Apr 10 2020 18:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 110.21341 * 2 1 4 4 O 1.21286 * 119.99598 * 102.04320 * 3 2 1 5 5 N 1.34776 * 120.00251 * 282.03911 * 3 2 1 6 6 C 1.47214 * 126.70052 * 175.88597 * 5 3 2 7 7 C 1.53783 * 106.37483 * 211.25321 * 6 5 3 8 8 H 1.08996 * 111.85764 * 103.08555 * 7 6 5 9 9 C 1.53783 * 109.34345 * 228.51907 * 7 6 5 10 10 N 1.47212 * 106.37628 * 93.96232 * 9 7 6 11 11 C 1.36936 * 126.70132 * 211.22433 * 10 9 7 12 12 H 1.08002 * 119.99967 * 174.70928 * 11 10 9 13 13 C 1.38813 * 120.00108 * 354.70888 * 11 10 9 14 14 N 1.31620 * 120.00183 * 335.46911 * 13 11 10 15 15 Si 1.86805 * 120.00091 * 155.45984 * 13 11 10 16 16 H 1.48503 * 109.46638 * 95.00057 * 15 13 11 17 17 H 1.48496 * 109.47351 * 215.00055 * 15 13 11 18 18 H 1.48498 * 109.46893 * 335.00638 * 15 13 11 19 19 C 1.47217 * 106.60006 * 31.27054 * 10 9 7 20 20 C 1.53781 * 106.37198 * 328.72763 * 19 10 9 21 21 C 1.52997 * 111.85981 * 140.61145 * 20 19 10 22 22 C 1.47215 * 126.69952 * 355.86540 * 5 3 2 23 23 C 1.54481 * 110.24738 * 121.92919 * 2 1 3 24 24 C 1.54634 * 101.76352 * 144.50586 * 23 2 1 25 25 C 1.51285 * 104.19329 * 335.20329 * 24 23 2 26 26 O 1.21280 * 124.93943 * 196.21784 * 25 24 23 27 27 N 1.34416 * 110.11571 * 16.25426 * 25 24 23 28 28 H 1.08997 * 109.47198 * 59.29907 * 1 2 3 29 29 H 1.09005 * 109.47032 * 179.29932 * 1 2 3 30 30 H 1.08998 * 109.47237 * 299.29313 * 1 2 3 31 31 H 1.08999 * 110.07621 * 92.02639 * 6 5 3 32 32 H 1.09002 * 110.07487 * 330.48018 * 6 5 3 33 33 H 1.09000 * 110.07258 * 213.18459 * 9 7 6 34 34 H 1.08997 * 110.07754 * 334.73178 * 9 7 6 35 35 H 0.96993 * 119.99900 * 179.97438 * 14 13 11 36 36 H 1.08998 * 110.07396 * 209.49935 * 19 10 9 37 37 H 1.08994 * 110.12264 * 87.97745 * 19 10 9 38 38 H 1.09002 * 109.47082 * 302.05796 * 21 20 19 39 39 H 1.09006 * 109.47100 * 62.06023 * 21 20 19 40 40 H 1.09001 * 109.47497 * 182.05583 * 21 20 19 41 41 H 1.08998 * 110.07341 * 29.51552 * 22 5 3 42 42 H 1.08997 * 110.11998 * 267.99706 * 22 5 3 43 43 H 1.08997 * 110.96768 * 262.62556 * 23 2 1 44 44 H 1.09003 * 110.96461 * 26.38923 * 23 2 1 45 45 H 1.08992 * 110.48369 * 93.88488 * 24 23 2 46 46 H 1.08999 * 110.48513 * 216.52700 * 24 23 2 47 47 H 0.97008 * 124.34474 * 180.41058 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0507 1.4142 0.0000 4 8 2.4659 1.9075 1.0273 5 7 2.0551 2.1308 -1.1415 6 6 2.4478 3.5414 -1.2932 7 6 1.5952 4.1077 -2.4410 8 1 0.7757 4.7242 -2.0719 9 6 2.5039 4.8609 -3.4269 10 7 2.8650 3.8961 -4.4786 11 6 4.0330 3.8628 -5.1925 12 1 4.2213 3.0535 -5.8825 13 6 4.9752 4.8691 -5.0294 14 7 4.6019 6.0575 -4.6044 15 14 6.7730 4.5365 -5.4128 16 1 7.0711 4.9696 -6.8016 17 1 7.6295 5.2922 -4.4639 18 1 7.0472 3.0833 -5.2778 19 6 1.7246 2.9749 -4.6138 20 6 1.0841 2.8705 -3.2196 21 6 -0.4435 2.8335 -3.2959 22 6 1.6686 1.6554 -2.4801 23 6 2.0646 -0.7665 1.2301 24 6 3.3301 -1.4433 0.6542 25 6 3.0548 -1.5427 -0.8301 26 8 3.6623 -2.2528 -1.6032 27 7 2.0397 -0.7288 -1.1674 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3633 0.5028 0.8962 31 1 3.5062 3.6103 -1.5442 32 1 2.2449 4.0875 -0.3719 33 1 1.9669 5.7041 -3.8612 34 1 3.4010 5.2109 -2.9163 35 1 5.2603 6.7605 -4.4901 36 1 2.0722 1.9948 -4.9402 37 1 1.0037 3.3729 -5.3278 38 1 -0.8038 3.7282 -3.8036 39 1 -0.7583 1.9494 -3.8504 40 1 -0.8569 2.7963 -2.2880 41 1 0.9163 0.8712 -2.3959 42 1 2.5429 1.2792 -3.0113 43 1 2.3222 -0.0795 2.0361 44 1 1.3441 -1.5109 1.5692 45 1 4.2098 -0.8269 0.8387 46 1 3.4614 -2.4359 1.0851 47 1 1.6890 -0.6353 -2.0670 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091986268.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:30 Heat of formation + Delta-G solvation = -32.176565 kcal Electronic energy + Delta-G solvation = -29430.980651 eV Core-core repulsion = 25614.502350 eV Total energy + Delta-G solvation = -3816.478301 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.42255 -39.82643 -38.45317 -36.49846 -35.11955 -32.88398 -31.70784 -31.25678 -30.88479 -30.01769 -26.71641 -26.06260 -25.44409 -25.02178 -23.23071 -21.71892 -20.94586 -20.28611 -19.67081 -18.74859 -17.61180 -16.98547 -16.60981 -15.91023 -15.76017 -15.23816 -14.79306 -14.60091 -14.38141 -14.20275 -13.82733 -13.70602 -13.57154 -13.36602 -13.04316 -12.85243 -12.77786 -12.60377 -12.47507 -12.12442 -12.06252 -11.88757 -11.49725 -11.35844 -11.26326 -11.01019 -10.89800 -10.76815 -10.49177 -10.27284 -10.15781 -10.07154 -10.03266 -9.93359 -9.71405 -9.14649 -8.57317 -8.51397 -6.99299 -5.89585 -3.10565 2.39049 2.47785 2.99612 3.15131 3.36893 3.45721 3.48934 3.98874 4.22576 4.29369 4.45234 4.51432 4.63650 4.77935 4.92816 4.97762 5.04618 5.18303 5.30083 5.33731 5.38185 5.46735 5.49321 5.59177 5.61075 5.63653 5.68874 5.71037 5.76365 5.81559 5.98231 6.10795 6.15952 6.20031 6.28920 6.37367 6.52329 6.58861 6.61655 6.75102 6.78380 7.22074 7.40193 7.62972 7.68549 8.05182 8.11105 8.12017 9.05943 9.71902 10.40948 11.25457 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.004616 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.793355 B = 6064.725988 C = 6839.822922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.145 3.855 3 C 0.526 3.474 4 O -0.539 6.539 5 N -0.601 5.601 6 C 0.117 3.883 7 C -0.115 4.115 8 H 0.083 0.917 9 C 0.170 3.830 10 N -0.592 5.592 11 C -0.237 4.237 12 H 0.079 0.921 13 C 0.002 3.998 14 N -0.903 5.903 15 Si 0.895 3.105 16 H -0.289 1.289 17 H -0.289 1.289 18 H -0.280 1.280 19 C 0.144 3.856 20 C -0.088 4.088 21 C -0.125 4.125 22 C 0.116 3.884 23 C -0.114 4.114 24 C -0.158 4.158 25 C 0.522 3.478 26 O -0.528 6.528 27 N -0.722 5.722 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.025 0.975 34 H 0.077 0.923 35 H 0.254 0.746 36 H 0.045 0.955 37 H 0.022 0.978 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.110 0.890 44 H 0.091 0.909 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.358 -11.296 10.741 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.054 3.946 3 C 0.312 3.688 4 O -0.416 6.416 5 N -0.332 5.332 6 C -0.005 4.005 7 C -0.135 4.135 8 H 0.101 0.899 9 C 0.044 3.956 10 N -0.316 5.316 11 C -0.364 4.364 12 H 0.097 0.903 13 C -0.196 4.196 14 N -0.548 5.548 15 Si 0.724 3.276 16 H -0.216 1.216 17 H -0.215 1.215 18 H -0.205 1.205 19 C 0.017 3.983 20 C -0.091 4.091 21 C -0.183 4.183 22 C -0.007 4.007 23 C -0.152 4.152 24 C -0.199 4.199 25 C 0.309 3.691 26 O -0.404 6.404 27 N -0.383 5.383 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.043 0.957 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.128 0.872 44 H 0.110 0.890 45 H 0.125 0.875 46 H 0.124 0.876 47 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -11.530 -11.336 11.022 19.568 hybrid contribution 0.773 0.155 -0.773 1.104 sum -10.757 -11.180 10.249 18.595 Atomic orbital electron populations 1.22098 0.91055 1.03797 1.04040 1.21180 0.96312 0.89339 0.87747 1.20290 0.78838 0.87254 0.82459 1.90694 1.47633 1.71649 1.31650 1.48538 1.64217 1.13150 1.07307 1.22238 0.99931 0.79810 0.98526 1.23047 0.98302 0.96524 0.95653 0.89917 1.21185 0.96194 0.90445 0.87824 1.44502 1.14442 1.31586 1.41033 1.18913 0.91199 1.06355 1.19942 0.90335 1.24671 0.98564 0.94797 1.01590 1.70068 1.32607 1.00879 1.51269 0.86383 0.85828 0.77890 0.77496 1.21580 1.21472 1.20516 1.21362 0.90238 0.94774 0.91940 1.22166 0.95103 0.94129 0.97658 1.21676 0.93428 1.02090 1.01117 1.22389 0.99280 0.96471 0.82605 1.22659 0.96613 0.99583 0.96362 1.22407 1.00293 1.04024 0.93136 1.20924 0.78774 0.78267 0.91160 1.90774 1.51283 1.40763 1.57543 1.46688 1.36810 1.43743 1.11032 0.91182 0.90427 0.90085 0.90423 0.91004 0.95699 0.90490 0.93571 0.93698 0.96002 0.91893 0.92626 0.93023 0.91652 0.90346 0.87183 0.89021 0.87510 0.87632 0.74514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.67 37.16 0.32 -0.81 16 2 C 0.14 1.49 0.73 -132.05 -0.10 1.40 16 3 C 0.53 7.52 6.85 -10.98 -0.08 7.44 16 4 O -0.54 -9.22 15.81 5.55 0.09 -9.13 16 5 N -0.60 -9.02 3.32 -171.57 -0.57 -9.59 16 6 C 0.12 2.00 6.45 -3.24 -0.02 1.98 16 7 C -0.11 -1.93 3.68 -88.83 -0.33 -2.26 16 8 H 0.08 1.25 7.88 -51.93 -0.41 0.85 16 9 C 0.17 3.75 5.14 -3.25 -0.02 3.74 16 10 N -0.59 -14.01 3.39 -171.13 -0.58 -14.59 16 11 C -0.24 -6.34 10.21 -15.06 -0.15 -6.50 16 12 H 0.08 2.07 7.94 -52.49 -0.42 1.65 16 13 C 0.00 0.04 5.19 -17.43 -0.09 -0.05 16 14 N -0.90 -25.74 11.19 55.49 0.62 -25.12 16 15 Si 0.89 21.77 29.62 -169.99 -5.03 16.73 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C 0.14 2.68 6.20 -3.24 -0.02 2.66 16 20 C -0.09 -1.31 1.09 -152.72 -0.17 -1.48 16 21 C -0.13 -1.44 8.49 37.16 0.32 -1.13 16 22 C 0.12 1.60 4.55 -3.24 -0.01 1.58 16 23 C -0.11 -1.00 6.12 -25.09 -0.15 -1.15 16 24 C -0.16 -1.60 6.85 -26.74 -0.18 -1.78 16 25 C 0.52 6.96 8.43 -10.86 -0.09 6.87 16 26 O -0.53 -9.20 18.03 5.56 0.10 -9.10 16 27 N -0.72 -8.14 4.51 -47.68 -0.21 -8.35 16 28 H 0.07 0.53 6.83 -51.93 -0.35 0.17 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.56 7.39 -51.93 -0.38 1.18 16 32 H 0.07 1.19 7.97 -51.93 -0.41 0.78 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.93 6.09 -51.93 -0.32 1.61 16 35 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.04 0.81 7.51 -51.93 -0.39 0.42 16 37 H 0.02 0.42 7.87 -51.93 -0.41 0.01 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.69 4.25 -51.93 -0.22 0.47 16 42 H 0.08 1.27 7.39 -51.93 -0.38 0.88 16 43 H 0.11 1.06 6.84 -51.93 -0.36 0.71 16 44 H 0.09 0.56 7.91 -51.93 -0.41 0.15 16 45 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.41 4.39 6.40 -40.82 -0.26 4.13 16 LS Contribution 361.56 15.07 5.45 5.45 Total: -1.00 -32.92 361.56 -8.16 -41.07 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.24 Total: 2.11 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -0.77 Total: 10.51 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -0.74 Total: -57.64 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.19 Total: -18.23 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.92 -8.16 -41.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091986268.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.896 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds