Wall clock time and date at job start Fri Apr 10 2020 18:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 110.21341 * 2 1 4 4 O 1.21286 * 119.99598 * 102.04320 * 3 2 1 5 5 N 1.34776 * 120.00251 * 282.03911 * 3 2 1 6 6 C 1.47214 * 126.70052 * 175.88597 * 5 3 2 7 7 C 1.53783 * 106.37483 * 211.25321 * 6 5 3 8 8 H 1.08996 * 111.85764 * 103.08555 * 7 6 5 9 9 C 1.53783 * 109.34345 * 228.51907 * 7 6 5 10 10 N 1.47212 * 106.37628 * 93.96232 * 9 7 6 11 11 C 1.36936 * 126.70132 * 211.22433 * 10 9 7 12 12 H 1.08002 * 119.99967 * 174.70928 * 11 10 9 13 13 C 1.38813 * 120.00108 * 354.70888 * 11 10 9 14 14 N 1.31620 * 120.00183 * 335.46911 * 13 11 10 15 15 Si 1.86805 * 120.00091 * 155.45984 * 13 11 10 16 16 H 1.48503 * 109.46638 * 95.00057 * 15 13 11 17 17 H 1.48496 * 109.47351 * 215.00055 * 15 13 11 18 18 H 1.48498 * 109.46893 * 335.00638 * 15 13 11 19 19 C 1.47217 * 106.60006 * 31.27054 * 10 9 7 20 20 C 1.53781 * 106.37198 * 328.72763 * 19 10 9 21 21 C 1.52997 * 111.85981 * 140.61145 * 20 19 10 22 22 C 1.47215 * 126.69952 * 355.86540 * 5 3 2 23 23 C 1.54481 * 110.24738 * 121.92919 * 2 1 3 24 24 C 1.54634 * 101.76352 * 144.50586 * 23 2 1 25 25 C 1.51285 * 104.19329 * 335.20329 * 24 23 2 26 26 O 1.21280 * 124.93943 * 196.21784 * 25 24 23 27 27 N 1.34416 * 110.11571 * 16.25426 * 25 24 23 28 28 H 1.08997 * 109.47198 * 59.29907 * 1 2 3 29 29 H 1.09005 * 109.47032 * 179.29932 * 1 2 3 30 30 H 1.08998 * 109.47237 * 299.29313 * 1 2 3 31 31 H 1.08999 * 110.07621 * 92.02639 * 6 5 3 32 32 H 1.09002 * 110.07487 * 330.48018 * 6 5 3 33 33 H 1.09000 * 110.07258 * 213.18459 * 9 7 6 34 34 H 1.08997 * 110.07754 * 334.73178 * 9 7 6 35 35 H 0.96993 * 119.99900 * 179.97438 * 14 13 11 36 36 H 1.08998 * 110.07396 * 209.49935 * 19 10 9 37 37 H 1.08994 * 110.12264 * 87.97745 * 19 10 9 38 38 H 1.09002 * 109.47082 * 302.05796 * 21 20 19 39 39 H 1.09006 * 109.47100 * 62.06023 * 21 20 19 40 40 H 1.09001 * 109.47497 * 182.05583 * 21 20 19 41 41 H 1.08998 * 110.07341 * 29.51552 * 22 5 3 42 42 H 1.08997 * 110.11998 * 267.99706 * 22 5 3 43 43 H 1.08997 * 110.96768 * 262.62556 * 23 2 1 44 44 H 1.09003 * 110.96461 * 26.38923 * 23 2 1 45 45 H 1.08992 * 110.48369 * 93.88488 * 24 23 2 46 46 H 1.08999 * 110.48513 * 216.52700 * 24 23 2 47 47 H 0.97008 * 124.34474 * 180.41058 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0507 1.4142 0.0000 4 8 2.4659 1.9075 1.0273 5 7 2.0551 2.1308 -1.1415 6 6 2.4478 3.5414 -1.2932 7 6 1.5952 4.1077 -2.4410 8 1 0.7757 4.7242 -2.0719 9 6 2.5039 4.8609 -3.4269 10 7 2.8650 3.8961 -4.4786 11 6 4.0330 3.8628 -5.1925 12 1 4.2213 3.0535 -5.8825 13 6 4.9752 4.8691 -5.0294 14 7 4.6019 6.0575 -4.6044 15 14 6.7730 4.5365 -5.4128 16 1 7.0711 4.9696 -6.8016 17 1 7.6295 5.2922 -4.4639 18 1 7.0472 3.0833 -5.2778 19 6 1.7246 2.9749 -4.6138 20 6 1.0841 2.8705 -3.2196 21 6 -0.4435 2.8335 -3.2959 22 6 1.6686 1.6554 -2.4801 23 6 2.0646 -0.7665 1.2301 24 6 3.3301 -1.4433 0.6542 25 6 3.0548 -1.5427 -0.8301 26 8 3.6623 -2.2528 -1.6032 27 7 2.0397 -0.7288 -1.1674 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3633 0.5028 0.8962 31 1 3.5062 3.6103 -1.5442 32 1 2.2449 4.0875 -0.3719 33 1 1.9669 5.7041 -3.8612 34 1 3.4010 5.2109 -2.9163 35 1 5.2603 6.7605 -4.4901 36 1 2.0722 1.9948 -4.9402 37 1 1.0037 3.3729 -5.3278 38 1 -0.8038 3.7282 -3.8036 39 1 -0.7583 1.9494 -3.8504 40 1 -0.8569 2.7963 -2.2880 41 1 0.9163 0.8712 -2.3959 42 1 2.5429 1.2792 -3.0113 43 1 2.3222 -0.0795 2.0361 44 1 1.3441 -1.5109 1.5692 45 1 4.2098 -0.8269 0.8387 46 1 3.4614 -2.4359 1.0851 47 1 1.6890 -0.6353 -2.0670 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091986268.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:29 Heat of formation + Delta-G solvation = -55.447647 kcal Electronic energy + Delta-G solvation = -29431.989761 eV Core-core repulsion = 25614.502350 eV Total energy + Delta-G solvation = -3817.487411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.47007 -41.07894 -39.69667 -37.57757 -36.69169 -34.51282 -32.77807 -32.42651 -32.10374 -31.38873 -27.86118 -27.67368 -26.94204 -25.88482 -24.58577 -22.93064 -22.07929 -21.73904 -20.75697 -20.09334 -18.99355 -18.25903 -17.96955 -17.14157 -16.99617 -16.62036 -16.37971 -15.80614 -15.67988 -15.53561 -15.18689 -14.86316 -14.66544 -14.53007 -14.23682 -13.82908 -13.77193 -13.68058 -13.59303 -13.35269 -13.19260 -13.13457 -13.02768 -12.77570 -12.56762 -12.44269 -12.13622 -12.03259 -11.99020 -11.88647 -11.61625 -11.57753 -11.43441 -11.36374 -11.03749 -10.60891 -10.17959 -9.81749 -8.96727 -8.00100 -5.19958 1.29943 1.38709 1.43127 1.43515 1.51429 1.85336 2.22856 2.44830 3.15022 3.18211 3.23780 3.41286 3.47838 3.61419 3.72273 3.78300 3.89497 4.05222 4.13133 4.23140 4.32437 4.32968 4.39151 4.59493 4.66305 4.72870 4.77881 4.79940 4.82499 4.84982 4.95186 4.97566 4.98820 5.10499 5.15639 5.19583 5.23030 5.23540 5.40011 5.44814 5.54190 5.62960 5.65336 5.83422 6.13337 6.45608 6.93367 7.00955 7.07768 7.71955 8.41634 9.14641 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.004616 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.793355 B = 6064.725988 C = 6839.822922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.149 3.851 3 C 0.521 3.479 4 O -0.569 6.569 5 N -0.602 5.602 6 C 0.123 3.877 7 C -0.102 4.102 8 H 0.108 0.892 9 C 0.177 3.823 10 N -0.614 5.614 11 C -0.242 4.242 12 H 0.078 0.922 13 C -0.051 4.051 14 N -0.933 5.933 15 Si 0.952 3.048 16 H -0.284 1.284 17 H -0.294 1.294 18 H -0.277 1.277 19 C 0.137 3.863 20 C -0.075 4.075 21 C -0.119 4.119 22 C 0.121 3.879 23 C -0.106 4.106 24 C -0.156 4.156 25 C 0.514 3.486 26 O -0.577 6.577 27 N -0.714 5.714 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.035 0.965 32 H 0.076 0.924 33 H -0.001 1.001 34 H 0.038 0.962 35 H 0.249 0.751 36 H 0.049 0.951 37 H 0.026 0.974 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.108 0.892 42 H 0.051 0.949 43 H 0.102 0.898 44 H 0.131 0.869 45 H 0.094 0.906 46 H 0.130 0.870 47 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.246 -13.679 11.968 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.059 3.941 3 C 0.309 3.691 4 O -0.448 6.448 5 N -0.334 5.334 6 C 0.000 4.000 7 C -0.122 4.122 8 H 0.127 0.873 9 C 0.051 3.949 10 N -0.338 5.338 11 C -0.370 4.370 12 H 0.096 0.904 13 C -0.246 4.246 14 N -0.581 5.581 15 Si 0.781 3.219 16 H -0.210 1.210 17 H -0.221 1.221 18 H -0.203 1.203 19 C 0.012 3.988 20 C -0.077 4.077 21 C -0.176 4.176 22 C -0.001 4.001 23 C -0.143 4.143 24 C -0.196 4.196 25 C 0.302 3.698 26 O -0.456 6.456 27 N -0.373 5.373 28 H 0.093 0.907 29 H 0.122 0.878 30 H 0.109 0.891 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.017 0.983 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.126 0.874 42 H 0.069 0.931 43 H 0.121 0.879 44 H 0.149 0.851 45 H 0.112 0.888 46 H 0.148 0.852 47 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -14.469 -13.737 12.250 23.412 hybrid contribution 1.689 0.917 -1.173 2.251 sum -12.780 -12.820 11.077 21.222 Atomic orbital electron populations 1.22162 0.87800 1.05802 1.04833 1.21360 0.98499 0.86315 0.87966 1.21177 0.77830 0.88633 0.81490 1.90684 1.48700 1.72718 1.32692 1.48590 1.64393 1.12191 1.08182 1.21921 0.97609 0.81826 0.98689 1.22880 0.97744 0.97215 0.94388 0.87347 1.20975 0.95256 0.90408 0.88297 1.44747 1.15218 1.32775 1.41095 1.19228 0.92619 1.05709 1.19494 0.90374 1.25326 1.01673 0.94838 1.02732 1.70198 1.33131 1.01487 1.53248 0.85471 0.81785 0.77461 0.77177 1.21042 1.22088 1.20280 1.21608 0.88875 0.93741 0.94594 1.22133 0.97688 0.93248 0.94624 1.21670 0.89687 1.03278 1.03006 1.22350 0.99257 0.96983 0.81550 1.22752 0.96554 0.99870 0.95151 1.22452 1.00666 1.05436 0.91070 1.21470 0.78412 0.77668 0.92210 1.90746 1.52898 1.42957 1.59040 1.46714 1.36164 1.42806 1.11621 0.90654 0.87802 0.89106 0.94702 0.90568 0.98293 0.94400 0.94185 0.93243 0.95592 0.92225 0.90037 0.90751 0.87395 0.93085 0.87919 0.85116 0.88757 0.85218 0.74240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.67 71.98 0.62 -0.80 16 2 C 0.15 2.56 0.73 3.31 0.00 2.56 16 3 C 0.52 13.91 6.85 87.66 0.60 14.51 16 4 O -0.57 -18.87 15.81 -3.05 -0.05 -18.91 16 5 N -0.60 -17.31 3.32 -815.13 -2.71 -20.01 16 6 C 0.12 4.25 6.45 86.51 0.56 4.81 16 7 C -0.10 -3.40 3.68 -9.63 -0.04 -3.43 16 8 H 0.11 3.09 7.88 -2.39 -0.02 3.07 16 9 C 0.18 8.19 5.14 86.51 0.44 8.63 16 10 N -0.61 -29.96 3.39 -695.34 -2.36 -32.32 16 11 C -0.24 -13.38 10.21 84.03 0.86 -12.52 16 12 H 0.08 4.21 7.94 -2.91 -0.02 4.19 16 13 C -0.05 -2.89 5.19 84.86 0.44 -2.45 16 14 N -0.93 -55.78 11.19 21.65 0.24 -55.54 16 15 Si 0.95 46.38 29.62 68.60 2.03 48.41 16 16 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 17 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 18 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 19 C 0.14 5.04 6.20 86.51 0.54 5.58 16 20 C -0.07 -2.07 1.09 -51.02 -0.06 -2.13 16 21 C -0.12 -2.21 8.49 71.98 0.61 -1.60 16 22 C 0.12 3.09 4.55 86.51 0.39 3.49 16 23 C -0.11 -1.47 6.12 31.65 0.19 -1.28 16 24 C -0.16 -2.83 6.85 30.59 0.21 -2.62 16 25 C 0.51 12.94 8.43 87.90 0.74 13.68 16 26 O -0.58 -19.92 18.03 -3.03 -0.05 -19.97 16 27 N -0.71 -14.22 4.51 -423.36 -1.91 -16.13 16 28 H 0.07 0.68 6.83 -2.39 -0.02 0.66 16 29 H 0.10 0.54 8.14 -2.38 -0.02 0.53 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.03 1.50 7.39 -2.39 -0.02 1.48 16 32 H 0.08 2.55 7.97 -2.39 -0.02 2.53 16 33 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.04 2.03 6.09 -2.39 -0.01 2.02 16 35 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 36 H 0.05 1.76 7.51 -2.39 -0.02 1.74 16 37 H 0.03 0.95 7.87 -2.39 -0.02 0.93 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.11 1.83 4.25 -2.39 -0.01 1.82 16 42 H 0.05 1.61 7.39 -2.39 -0.02 1.60 16 43 H 0.10 1.69 6.84 -2.39 -0.02 1.67 16 44 H 0.13 0.87 7.91 -2.39 -0.02 0.85 16 45 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.41 7.63 6.40 -92.70 -0.59 7.03 16 Total: -1.00 -77.22 361.56 1.72 -75.51 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.39 Total: 12.53 kcal Atomic # 6 Polarization: 20.31 SS G_CDS: 6.12 Total: 26.43 kcal Atomic # 7 Polarization: -117.26 SS G_CDS: -6.73 Total: -123.99 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.10 Total: -38.89 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -77.22 1.72 -75.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091986268.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.060 kcal (2) G-P(sol) polarization free energy of solvation -77.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds