Wall clock time and date at job start Fri Apr 10 2020 18:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53775 * 111.86263 * 2 1 4 4 N 1.47220 * 106.37623 * 104.04929 * 3 2 1 5 5 C 1.36935 * 126.69885 * 211.25075 * 4 3 2 6 6 H 1.08001 * 120.00268 * 359.97438 * 5 4 3 7 7 C 1.38813 * 120.00031 * 179.97438 * 5 4 3 8 8 N 1.31626 * 119.99599 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00331 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46954 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47269 * 120.00443 * 9 7 5 12 12 H 1.48496 * 109.47414 * 240.00321 * 9 7 5 13 13 C 1.47208 * 106.59601 * 31.26834 * 4 3 2 14 14 C 1.53702 * 106.42286 * 328.70420 * 13 4 3 15 15 H 1.08997 * 112.61664 * 256.47385 * 14 13 4 16 16 C 1.53784 * 109.38744 * 131.42473 * 14 13 4 17 17 N 1.47216 * 106.42645 * 266.12742 * 16 14 13 18 18 C 1.34769 * 126.70594 * 148.72942 * 17 16 14 19 19 O 1.21281 * 120.00363 * 179.97438 * 18 17 16 20 20 C 1.50702 * 119.99887 * 359.97438 * 18 17 16 21 21 C 1.52993 * 109.47444 * 179.97438 * 20 18 17 22 22 H 1.09005 * 110.22021 * 305.70183 * 21 20 18 23 23 C 1.54482 * 110.25228 * 183.76829 * 21 20 18 24 24 C 1.54622 * 101.76940 * 215.58543 * 23 21 20 25 25 C 1.51282 * 104.19357 * 24.79814 * 24 23 21 26 26 O 1.21287 * 124.94089 * 163.77483 * 25 24 23 27 27 N 1.34561 * 110.14416 * 343.67337 * 25 24 23 28 28 C 1.47214 * 106.59259 * 328.69040 * 17 16 14 29 29 H 1.08991 * 109.47403 * 182.04450 * 1 2 3 30 30 H 1.09000 * 109.46537 * 302.04725 * 1 2 3 31 31 H 1.09003 * 109.47247 * 62.04017 * 1 2 3 32 32 H 1.09004 * 110.07488 * 223.27631 * 3 2 1 33 33 H 1.08998 * 110.07551 * 344.76163 * 3 2 1 34 34 H 0.97000 * 119.99449 * 179.97438 * 8 7 5 35 35 H 1.09000 * 110.07539 * 87.95848 * 13 4 3 36 36 H 1.09001 * 110.07543 * 209.44622 * 13 4 3 37 37 H 1.09002 * 110.07498 * 146.86703 * 16 14 13 38 38 H 1.09001 * 110.07170 * 25.38427 * 16 14 13 39 39 H 1.09002 * 109.47076 * 299.99992 * 20 18 17 40 40 H 1.09007 * 109.47184 * 59.99800 * 20 18 17 41 41 H 1.08998 * 110.96294 * 333.70690 * 23 21 20 42 42 H 1.09003 * 110.96344 * 97.46025 * 23 21 20 43 43 H 1.09003 * 110.48379 * 143.47302 * 24 23 21 44 44 H 1.08996 * 110.48567 * 265.98971 * 24 23 21 45 45 H 0.97003 * 124.43811 * 179.64589 * 27 25 24 46 46 H 1.09001 * 110.07460 * 150.50212 * 28 17 16 47 47 H 1.09000 * 110.08222 * 271.99177 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1026 1.4272 0.0000 4 7 2.5754 1.6847 1.3702 5 6 2.6011 2.8933 2.0134 6 1 2.2501 3.7813 1.5087 7 6 3.0784 2.9773 3.3142 8 7 3.5066 1.8952 3.9292 9 14 3.1142 4.6260 4.1915 10 1 2.5827 5.6787 3.2887 11 1 2.2756 4.5542 5.4149 12 1 4.5121 4.9561 4.5683 13 6 3.0155 0.3893 1.9136 14 6 2.1293 -0.6811 1.2567 15 1 1.3553 -1.0538 1.9275 16 6 3.0152 -1.8166 0.7174 17 7 3.2840 -1.4999 -0.6949 18 6 4.3942 -1.8104 -1.3929 19 8 4.4877 -1.4884 -2.5584 20 6 5.5196 -2.5578 -0.7251 21 6 6.6505 -2.7820 -1.7309 22 1 6.2677 -3.2753 -2.6244 23 6 7.7738 -3.6289 -1.0925 24 6 9.0380 -3.0095 -1.7321 25 6 8.6176 -1.6030 -2.0976 26 8 9.3792 -0.6976 -2.3647 27 7 7.2758 -1.5024 -2.0856 28 6 2.1025 -0.7787 -1.1962 29 1 -0.3634 -1.0269 0.0367 30 1 -0.3632 0.5453 0.8711 31 1 -0.3634 0.4818 -0.9077 32 1 2.9337 1.4968 -0.7018 33 1 1.3252 2.1422 -0.2691 34 1 3.8404 1.9539 4.8380 35 1 4.0617 0.2143 1.6628 36 1 2.8826 0.3727 2.9954 37 1 2.4907 -2.7690 0.7941 38 1 3.9504 -1.8589 1.2759 39 1 5.8926 -1.9758 0.1177 40 1 5.1548 -3.5211 -0.3684 41 1 7.7855 -3.5081 -0.0093 42 1 7.6732 -4.6794 -1.3654 43 1 9.8575 -2.9882 -1.0137 44 1 9.3270 -3.5671 -2.6229 45 1 6.7848 -0.6898 -2.2845 46 1 2.3938 -0.0878 -1.9874 47 1 1.3633 -1.4864 -1.5714 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092093154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:40 Heat of formation + Delta-G solvation = -44.459578 kcal Electronic energy + Delta-G solvation = -28355.833052 eV Core-core repulsion = 24538.822119 eV Total energy + Delta-G solvation = -3817.010933 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.75020 -40.04378 -38.40362 -36.52748 -35.02871 -32.98449 -31.38789 -31.29298 -30.80479 -30.06903 -26.92597 -26.05596 -25.19619 -24.71901 -22.55625 -21.51717 -20.59807 -20.32775 -19.30075 -18.62486 -17.43360 -16.92449 -16.67769 -16.56090 -15.78274 -15.35724 -14.91115 -14.72861 -14.32865 -13.99930 -13.76126 -13.63777 -13.53537 -13.38079 -13.07425 -12.79689 -12.65598 -12.63286 -12.16158 -11.97063 -11.79882 -11.66937 -11.62588 -11.44197 -11.25991 -11.03179 -10.97064 -10.83233 -10.20542 -10.14271 -10.05594 -9.89474 -9.83739 -9.72368 -9.54452 -9.13231 -8.78134 -8.51052 -6.94356 -5.71336 -3.15839 2.58391 2.66012 3.06155 3.35665 3.36155 3.41952 3.43823 4.11552 4.22317 4.41376 4.43857 4.57351 4.82856 4.86972 4.89499 5.06662 5.09115 5.18273 5.25880 5.39928 5.41931 5.45629 5.53171 5.54183 5.58619 5.60558 5.68404 5.83147 5.85885 5.92918 5.97616 6.09712 6.21135 6.29848 6.34996 6.46524 6.59450 6.73819 6.79841 6.86650 7.07541 7.34122 7.54898 7.66429 7.74674 8.19138 8.26171 8.31877 9.14393 9.75074 10.42180 11.30073 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.012152 B = 0.003851 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.573757 B = 7268.289169 C = 8652.210842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.087 4.087 3 C 0.144 3.856 4 N -0.595 5.595 5 C -0.218 4.218 6 H 0.079 0.921 7 C -0.011 4.011 8 N -0.922 5.922 9 Si 0.915 3.085 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.290 1.290 13 C 0.144 3.856 14 C -0.115 4.115 15 H 0.088 0.912 16 C 0.107 3.893 17 N -0.607 5.607 18 C 0.530 3.470 19 O -0.550 6.550 20 C -0.150 4.150 21 C 0.148 3.852 22 H 0.090 0.910 23 C -0.130 4.130 24 C -0.155 4.155 25 C 0.515 3.485 26 O -0.540 6.540 27 N -0.717 5.717 28 C 0.119 3.881 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.017 0.983 33 H 0.043 0.957 34 H 0.252 0.748 35 H 0.006 0.994 36 H 0.124 0.876 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.416 0.584 46 H 0.077 0.923 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.524 -16.319 -7.090 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.090 4.090 3 C 0.017 3.983 4 N -0.318 5.318 5 C -0.346 4.346 6 H 0.097 0.903 7 C -0.206 4.206 8 N -0.572 5.572 9 Si 0.746 3.254 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.217 1.217 13 C 0.018 3.982 14 C -0.135 4.135 15 H 0.106 0.894 16 C -0.016 4.016 17 N -0.340 5.340 18 C 0.319 3.681 19 O -0.429 6.429 20 C -0.191 4.191 21 C 0.042 3.958 22 H 0.107 0.893 23 C -0.168 4.168 24 C -0.196 4.196 25 C 0.301 3.699 26 O -0.418 6.418 27 N -0.373 5.373 28 C -0.004 4.004 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.035 0.965 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.024 0.976 36 H 0.141 0.859 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.256 0.744 46 H 0.096 0.904 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.188 -15.654 -7.664 17.470 hybrid contribution -0.320 1.116 0.455 1.247 sum 0.868 -14.538 -7.209 16.251 Atomic orbital electron populations 1.21610 0.93167 1.01034 1.02123 1.22197 0.95565 0.97339 0.93866 1.21442 0.95788 0.92171 0.88891 1.44501 1.73159 1.04715 1.09393 1.19156 1.35302 0.84839 0.95288 0.90324 1.24755 1.01195 0.97656 0.97038 1.69590 1.48814 1.25852 1.12902 0.85976 0.77337 0.82617 0.79463 1.20511 1.21688 1.21711 1.21954 0.92081 0.81694 1.02448 1.23113 0.98232 0.95929 0.96260 0.89416 1.22249 1.00394 0.98031 0.80929 1.48476 1.16849 1.56007 1.12643 1.20169 0.81933 0.79670 0.86287 1.90697 1.80178 1.55404 1.16611 1.22095 0.94279 1.02573 1.00114 1.21417 0.92202 0.84797 0.97385 0.89259 1.22727 0.92787 0.99906 1.01374 1.22335 0.99505 0.94457 1.03271 1.20924 0.82553 0.90323 0.76074 1.90756 1.56251 1.44852 1.49907 1.46405 1.07120 1.13585 1.70202 1.22077 0.86284 0.95018 0.96992 0.93117 0.91605 0.92863 0.96518 0.93899 0.93695 0.97642 0.85893 0.91965 0.90272 0.87705 0.87347 0.89443 0.88895 0.88018 0.87858 0.74365 0.90438 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 8.50 37.16 0.32 -1.35 16 2 C -0.09 -1.41 1.09 -152.64 -0.17 -1.57 16 3 C 0.14 2.93 6.37 -3.25 -0.02 2.91 16 4 N -0.59 -14.62 3.39 -171.18 -0.58 -15.20 16 5 C -0.22 -5.91 10.34 -15.06 -0.16 -6.07 16 6 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 7 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 8 N -0.92 -25.79 10.08 55.49 0.56 -25.23 16 9 Si 0.92 21.72 29.55 -169.99 -5.02 16.69 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.14 3.21 5.70 -3.29 -0.02 3.19 16 14 C -0.11 -1.91 3.71 -88.79 -0.33 -2.24 16 15 H 0.09 1.38 7.92 -51.93 -0.41 0.97 16 16 C 0.11 1.42 6.17 -3.24 -0.02 1.40 16 17 N -0.61 -8.68 3.32 -171.57 -0.57 -9.25 16 18 C 0.53 7.45 7.69 -10.99 -0.08 7.36 16 19 O -0.55 -9.28 15.18 5.56 0.08 -9.19 16 20 C -0.15 -1.49 4.29 -27.89 -0.12 -1.61 16 21 C 0.15 1.41 3.00 -67.01 -0.20 1.21 16 22 H 0.09 0.85 7.96 -51.93 -0.41 0.44 16 23 C -0.13 -0.85 6.69 -25.10 -0.17 -1.01 16 24 C -0.16 -1.31 6.86 -26.75 -0.18 -1.49 16 25 C 0.52 7.04 8.43 -10.80 -0.09 6.95 16 26 O -0.54 -9.90 18.03 5.55 0.10 -9.80 16 27 N -0.72 -9.27 5.62 -52.72 -0.30 -9.57 16 28 C 0.12 1.76 5.95 -3.24 -0.02 1.74 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.02 0.37 7.39 -51.93 -0.38 -0.01 16 33 H 0.04 0.85 7.82 -51.93 -0.41 0.45 16 34 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.01 0.14 7.40 -51.93 -0.38 -0.25 16 36 H 0.12 3.13 5.44 -51.93 -0.28 2.85 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.02 6.68 -51.93 -0.35 0.67 16 39 H 0.10 1.11 7.86 -51.93 -0.41 0.70 16 40 H 0.11 0.74 8.14 -51.92 -0.42 0.32 16 41 H 0.09 0.52 7.91 -51.93 -0.41 0.11 16 42 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.42 6.22 8.00 -40.82 -0.33 5.89 16 46 H 0.08 1.25 7.29 -51.93 -0.38 0.87 16 47 H 0.06 0.80 7.88 -51.93 -0.41 0.39 16 LS Contribution 367.58 15.07 5.54 5.54 Total: -1.00 -33.73 367.58 -9.03 -42.77 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -7.49 Total: 4.25 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -1.36 Total: 9.01 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: -0.89 Total: -59.26 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.18 Total: -18.99 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.73 -9.03 -42.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092093154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.692 kcal (2) G-P(sol) polarization free energy of solvation -33.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds