Wall clock time and date at job start Fri Apr 10 2020 18:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99817 * 2 1 4 4 H 1.48500 * 109.47646 * 269.99818 * 3 2 1 5 5 H 1.48495 * 109.47228 * 30.00423 * 3 2 1 6 6 H 1.48508 * 109.46868 * 150.00198 * 3 2 1 7 7 C 1.38810 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99583 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00346 * 0.02562 * 7 2 1 10 10 C 1.47580 * 134.49247 * 180.02562 * 9 7 2 11 11 C 1.53951 * 86.11519 * 155.35336 * 10 9 7 12 12 N 1.46501 * 113.73667 * 137.95282 * 11 10 9 13 13 C 1.46768 * 124.34587 * 121.92990 * 12 11 10 14 14 C 1.54487 * 105.46844 * 197.03151 * 13 12 11 15 15 H 1.08999 * 110.96649 * 216.46453 * 14 13 12 16 16 N 1.46501 * 110.96688 * 92.73749 * 14 13 12 17 17 C 1.34776 * 119.99633 * 154.99847 * 16 14 13 18 18 O 1.21284 * 120.00475 * 359.97438 * 17 16 14 19 19 C 1.50702 * 119.99919 * 180.02562 * 17 16 14 20 20 C 1.53008 * 109.46917 * 180.02562 * 19 17 16 21 21 C 1.53776 * 113.61157 * 274.12946 * 20 19 17 22 22 C 1.53955 * 87.02088 * 220.05064 * 21 20 19 23 23 C 1.53781 * 87.10907 * 25.36851 * 22 21 20 24 24 C 1.54619 * 101.76557 * 334.58255 * 14 13 12 25 25 C 1.34413 * 124.35257 * 301.94428 * 12 11 10 26 26 O 1.21288 * 124.93802 * 359.57788 * 25 12 11 27 27 C 1.47819 * 134.45692 * 359.86224 * 9 7 2 28 28 H 0.97002 * 119.99787 * 359.97438 * 1 2 3 29 29 H 1.09007 * 113.76867 * 41.05537 * 10 9 7 30 30 H 1.08996 * 113.76713 * 269.65556 * 10 9 7 31 31 H 1.09005 * 113.73957 * 269.14975 * 11 10 9 32 32 H 1.09000 * 110.25007 * 78.03152 * 13 12 11 33 33 H 1.09004 * 110.24485 * 316.02858 * 13 12 11 34 34 H 0.96989 * 120.00437 * 335.00180 * 16 14 13 35 35 H 1.09005 * 109.46626 * 299.99466 * 19 17 16 36 36 H 1.08990 * 109.47323 * 59.99718 * 19 17 16 37 37 H 1.08996 * 112.85393 * 45.32990 * 20 19 17 38 38 H 1.09000 * 113.61527 * 334.56969 * 21 20 19 39 39 H 1.08998 * 113.61321 * 105.47519 * 21 20 19 40 40 H 1.08991 * 113.53784 * 270.81370 * 22 21 20 41 41 H 1.09006 * 113.73935 * 139.94210 * 22 21 20 42 42 H 1.09002 * 113.61292 * 220.09292 * 23 22 21 43 43 H 1.08989 * 113.61763 * 89.18804 * 23 22 21 44 44 H 1.09007 * 110.48907 * 143.47513 * 24 14 13 45 45 H 1.09001 * 110.48711 * 265.98708 * 24 14 13 46 46 H 1.08995 * 113.76591 * 90.38379 * 27 9 7 47 47 H 1.09002 * 113.83433 * 318.92517 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 1.7202 -3.8101 -0.0019 11 6 0.3466 -4.0832 0.6374 12 7 -0.3334 -5.2614 0.0935 13 6 -0.7623 -6.4135 0.8952 14 6 -1.0127 -7.5512 -0.1196 15 1 -1.8635 -8.1623 0.1817 16 7 0.1868 -8.3748 -0.2902 17 6 0.0732 -9.6541 -0.6989 18 8 -1.0220 -10.1236 -0.9250 19 6 1.3070 -10.5016 -0.8739 20 6 0.9023 -11.9009 -1.3421 21 6 0.5436 -12.8557 -0.1913 22 6 1.2867 -13.9521 -0.9762 23 6 2.0983 -12.8229 -1.6329 24 6 -1.3292 -6.7593 -1.4093 25 6 -0.6442 -5.4262 -1.2038 26 8 -0.4096 -4.6230 -2.0817 27 6 -0.1058 -2.7571 0.0001 28 1 -0.4850 0.8401 0.0004 29 1 2.5620 -4.0326 0.6538 30 1 1.8326 -4.2346 -0.9995 31 1 0.3583 -4.0646 1.7272 32 1 -1.6811 -6.1783 1.4324 33 1 0.0226 -6.6988 1.5957 34 1 1.0626 -7.9996 -0.1090 35 1 1.9593 -10.0443 -1.6180 36 1 1.8354 -10.5747 0.0766 37 1 0.1611 -11.8821 -2.1410 38 1 1.0194 -12.5975 0.7547 39 1 -0.5265 -13.0375 -0.0924 40 1 0.6499 -14.4950 -1.6744 41 1 1.8855 -14.6119 -0.3484 42 1 2.2814 -12.9782 -2.6962 43 1 2.9998 -12.5557 -1.0818 44 1 -0.9180 -7.2691 -2.2807 45 1 -2.4052 -6.6246 -1.5198 46 1 -0.5312 -2.8714 -0.9969 47 1 -0.7189 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094718130.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:01 Heat of formation + Delta-G solvation = 11.578040 kcal Electronic energy + Delta-G solvation = -27170.481399 eV Core-core repulsion = 23355.900440 eV Total energy + Delta-G solvation = -3814.580959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.83454 -39.90749 -38.53267 -37.22759 -36.33641 -33.94951 -32.24837 -31.20101 -29.90254 -27.56918 -27.08096 -25.91412 -24.75247 -24.20852 -23.39510 -21.73858 -20.74826 -20.34320 -19.67798 -18.30408 -17.36934 -17.03469 -16.71404 -16.27860 -15.99064 -15.40406 -15.30859 -14.86532 -14.69167 -14.42333 -14.01414 -13.83122 -13.65864 -13.44941 -13.16523 -12.80951 -12.77208 -12.56958 -12.19808 -11.96953 -11.80074 -11.76184 -11.70399 -11.41746 -11.35831 -10.96776 -10.85728 -10.70183 -10.65176 -10.51612 -10.21633 -10.00226 -9.98161 -9.59175 -9.50803 -9.14475 -8.66929 -8.19067 -6.82668 -5.73048 -3.05229 2.40879 2.83998 2.95706 3.25018 3.41797 3.46653 3.47997 4.18594 4.26468 4.31023 4.37565 4.43738 4.50448 4.54172 4.70069 4.78248 5.00936 5.04824 5.11398 5.22940 5.26726 5.36197 5.38741 5.41412 5.43095 5.52983 5.56942 5.59596 5.62574 5.65281 5.70576 5.75938 5.84201 5.94688 6.18536 6.23246 6.26322 6.49449 6.56560 6.86416 7.22976 7.28278 7.49309 7.57989 7.62713 7.98447 8.00318 8.56471 9.07436 9.73755 10.62639 11.44148 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.029428 B = 0.002303 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.250295 B =12153.243635 C =12583.086301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.221 4.221 8 H 0.080 0.920 9 N -0.605 5.605 10 C 0.112 3.888 11 C 0.099 3.901 12 N -0.609 5.609 13 C 0.095 3.905 14 C 0.133 3.867 15 H 0.116 0.884 16 N -0.723 5.723 17 C 0.517 3.483 18 O -0.537 6.537 19 C -0.134 4.134 20 C -0.094 4.094 21 C -0.134 4.134 22 C -0.144 4.144 23 C -0.139 4.139 24 C -0.167 4.167 25 C 0.512 3.488 26 O -0.510 6.510 27 C 0.152 3.848 28 H 0.254 0.746 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.404 0.596 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.110 0.890 46 H 0.056 0.944 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.512 -26.713 2.709 26.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.348 4.348 8 H 0.098 0.902 9 N -0.331 5.331 10 C -0.015 4.015 11 C -0.004 4.004 12 N -0.345 5.345 13 C -0.030 4.030 14 C 0.027 3.973 15 H 0.134 0.866 16 N -0.376 5.376 17 C 0.304 3.696 18 O -0.413 6.413 19 C -0.174 4.174 20 C -0.113 4.113 21 C -0.172 4.172 22 C -0.181 4.181 23 C -0.177 4.177 24 C -0.209 4.209 25 C 0.298 3.702 26 O -0.385 6.385 27 C 0.027 3.973 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.123 0.877 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.239 0.761 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.118 0.882 45 H 0.128 0.872 46 H 0.074 0.926 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.082 -26.180 2.124 26.266 hybrid contribution 0.902 1.188 0.030 1.492 sum 0.820 -24.992 2.154 25.098 Atomic orbital electron populations 1.69833 1.05022 1.25311 1.56413 1.24810 0.95701 0.97572 1.02427 0.86098 0.78537 0.83373 0.77605 1.21597 1.21632 1.20620 1.18975 0.90164 0.81728 1.43971 0.90220 1.45709 1.02457 0.99120 1.85849 1.22910 0.94149 0.87011 0.97430 1.24047 0.94168 0.83894 0.98300 1.48538 1.58784 1.19137 1.08007 1.22354 1.01487 0.85199 0.93937 1.21838 0.89405 0.91345 0.94664 0.86606 1.46086 1.09914 1.12098 1.69485 1.20750 0.91449 0.81581 0.75849 1.90700 1.28444 1.72457 1.49735 1.21733 0.96124 0.95777 1.03736 1.22335 0.98288 0.91172 0.99486 1.22967 1.00940 0.96084 0.97170 1.22830 0.99171 0.96430 0.99682 1.22986 0.97176 0.96440 1.01052 1.22823 1.03213 0.95155 0.99668 1.20692 0.78822 0.88077 0.82586 1.90791 1.54131 1.47947 1.45591 1.22781 0.88268 0.87273 0.99009 0.93640 0.94060 0.94364 0.87698 0.89710 0.89901 0.76120 0.88592 0.88722 0.88249 0.90396 0.91215 0.90259 0.91560 0.91412 0.90040 0.88215 0.87162 0.92605 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.16 11.39 55.49 0.63 -27.53 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.22 -6.40 10.70 -15.06 -0.16 -6.56 16 8 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 9 N -0.60 -16.21 3.70 -177.88 -0.66 -16.87 16 10 C 0.11 2.38 8.44 -2.96 -0.03 2.36 16 11 C 0.10 1.83 4.81 -70.15 -0.34 1.49 16 12 N -0.61 -9.00 3.15 -166.64 -0.53 -9.53 16 13 C 0.09 0.91 6.98 -3.12 -0.02 0.89 16 14 C 0.13 1.23 3.53 -66.30 -0.23 1.00 16 15 H 0.12 1.03 7.54 -51.93 -0.39 0.64 16 16 N -0.72 -6.03 5.12 -52.22 -0.27 -6.30 16 17 C 0.52 4.80 7.83 -10.98 -0.09 4.72 16 18 O -0.54 -6.83 15.43 5.55 0.09 -6.74 16 19 C -0.13 -0.87 5.52 -27.88 -0.15 -1.03 16 20 C -0.09 -0.69 3.11 -89.80 -0.28 -0.96 16 21 C -0.13 -0.95 7.65 -25.83 -0.20 -1.15 16 22 C -0.14 -0.87 8.09 -25.83 -0.21 -1.08 16 23 C -0.14 -0.82 7.65 -25.92 -0.20 -1.02 16 24 C -0.17 -1.98 6.59 -26.75 -0.18 -2.15 16 25 C 0.51 8.50 7.42 -10.86 -0.08 8.42 16 26 O -0.51 -11.30 14.61 5.55 0.08 -11.22 16 27 C 0.15 3.79 6.90 -2.85 -0.02 3.77 16 28 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.04 0.86 7.25 -51.93 -0.38 0.49 16 31 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.40 2.83 8.66 -40.82 -0.35 2.47 16 35 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.46 7.88 -51.93 -0.41 0.05 16 37 H 0.10 0.89 7.73 -51.93 -0.40 0.49 16 38 H 0.08 0.49 7.92 -51.93 -0.41 0.08 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.41 8.10 -51.94 -0.42 -0.01 16 44 H 0.10 1.22 8.09 -51.93 -0.42 0.80 16 45 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.06 1.54 5.72 -51.93 -0.30 1.24 16 47 H 0.07 1.89 7.16 -51.93 -0.37 1.52 16 LS Contribution 378.53 15.07 5.70 5.70 Total: -1.00 -36.58 378.53 -9.87 -46.45 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -7.62 Total: 0.05 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -2.28 Total: 8.34 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.82 Total: -60.23 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.17 Total: -17.97 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.58 -9.87 -46.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094718130.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.029 kcal (2) G-P(sol) polarization free energy of solvation -36.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds