Wall clock time and date at job start Fri Apr 10 2020 18:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53781 * 113.61827 * 2 1 4 4 C 1.53780 * 87.08177 * 89.20381 * 3 2 1 5 5 C 1.50693 * 113.61502 * 139.98213 * 4 3 2 6 6 O 1.21284 * 120.00105 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99988 * 179.97438 * 5 4 3 8 8 C 1.46502 * 120.00234 * 180.02562 * 7 5 4 9 9 H 1.09009 * 110.85362 * 322.66260 * 8 7 5 10 10 C 1.54622 * 110.97328 * 86.45488 * 8 7 5 11 11 C 1.51283 * 104.19616 * 93.32141 * 10 8 7 12 12 O 1.21276 * 124.94107 * 196.27685 * 11 10 8 13 13 N 1.34414 * 110.11033 * 16.25490 * 11 10 8 14 14 C 1.46510 * 124.34673 * 180.40693 * 13 11 10 15 15 C 1.53946 * 113.84020 * 321.37865 * 14 13 11 16 16 N 1.47580 * 86.11645 * 90.74870 * 15 14 13 17 17 C 1.36940 * 134.49194 * 204.64076 * 16 15 14 18 18 H 1.08004 * 119.99910 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00130 * 0.02562 * 17 16 15 20 20 N 1.31623 * 119.99843 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00040 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47249 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47360 * 120.00281 * 21 19 17 24 24 H 1.48499 * 109.47453 * 240.00193 * 21 19 17 25 25 C 1.47585 * 91.01539 * 24.64210 * 16 15 14 26 26 C 1.46762 * 111.30495 * 0.67330 * 13 11 10 27 27 C 1.53777 * 113.69284 * 97.53958 * 2 1 3 28 28 H 1.09001 * 109.47513 * 59.99496 * 1 2 3 29 29 H 1.08996 * 109.47582 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47051 * 300.00000 * 1 2 3 31 31 H 1.09002 * 112.84778 * 228.80243 * 2 1 3 32 32 H 1.08998 * 113.61276 * 334.64697 * 3 2 1 33 33 H 1.09005 * 113.61575 * 203.75188 * 3 2 1 34 34 H 1.09003 * 113.61027 * 270.80176 * 4 3 2 35 35 H 0.97002 * 120.00159 * 0.02562 * 7 5 4 36 36 H 1.09005 * 110.48236 * 334.64799 * 10 8 7 37 37 H 1.08996 * 110.49092 * 212.00057 * 10 8 7 38 38 H 1.09002 * 112.94617 * 189.69252 * 14 13 11 39 39 H 1.08996 * 113.77105 * 205.05282 * 15 14 13 40 40 H 1.09002 * 113.76556 * 336.45215 * 15 14 13 41 41 H 0.96992 * 119.99795 * 179.97438 * 20 19 17 42 42 H 1.08996 * 113.76681 * 221.05446 * 25 16 15 43 43 H 1.08994 * 113.76726 * 89.65745 * 25 16 15 44 44 H 1.09000 * 110.24609 * 101.72056 * 26 13 11 45 45 H 1.09001 * 110.24110 * 223.71552 * 26 13 11 46 46 H 1.09006 * 113.61838 * 156.32115 * 27 2 1 47 47 H 1.08994 * 113.61881 * 25.41265 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 2.0951 1.3458 1.5357 5 6 3.3109 1.9332 2.2046 6 8 4.2089 2.3953 1.5330 7 7 3.4005 1.9451 3.5494 8 6 4.5822 2.5167 4.1998 9 1 5.4853 2.2892 3.6332 10 6 4.4222 4.0419 4.3969 11 6 3.8518 4.1780 5.7914 12 8 3.3209 5.1762 6.2304 13 7 4.0185 3.0315 6.4729 14 6 3.5728 2.8173 7.8520 15 6 3.7653 4.0415 8.7654 16 7 2.4009 4.4321 8.3609 17 6 1.7222 5.6198 8.2957 18 1 0.6976 5.6382 7.9547 19 6 2.3512 6.7999 8.6678 20 7 3.6001 6.7775 9.0829 21 14 1.4258 8.4200 8.5782 22 1 0.0472 8.1759 8.0829 23 1 1.3644 9.0306 9.9306 24 1 2.1296 9.3416 7.6506 25 6 2.0615 3.0288 8.0548 26 6 4.7100 2.0239 5.6602 27 6 2.1478 -0.1848 1.3960 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.9532 -0.6616 -0.7558 32 1 1.4940 2.1706 -0.4276 33 1 3.1586 1.4428 -0.4023 34 1 1.1601 1.7152 1.9570 35 1 2.6825 1.5752 4.0866 36 1 3.7307 4.4512 3.6603 37 1 5.3900 4.5389 4.3304 38 1 3.9471 1.8873 8.2799 39 1 3.8555 3.7911 9.8224 40 1 4.5389 4.7284 8.4221 41 1 4.0397 7.6021 9.3426 42 1 1.4747 2.9073 7.1444 43 1 1.6512 2.4811 8.9031 44 1 5.7590 1.9609 5.9496 45 1 4.2279 1.0528 5.7729 46 1 3.1609 -0.5867 1.3754 47 1 1.4973 -0.7096 2.0955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094720904.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:08 Heat of formation + Delta-G solvation = 32.819997 kcal Electronic energy + Delta-G solvation = -28175.188724 eV Core-core repulsion = 24361.528885 eV Total energy + Delta-G solvation = -3813.659839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.80764 -39.94797 -38.17809 -36.95866 -35.79321 -33.65937 -31.89395 -30.44194 -29.53512 -27.34220 -26.99313 -25.96780 -25.08927 -24.70545 -23.24735 -21.69915 -20.75443 -20.22492 -18.88040 -17.85218 -17.56670 -16.81078 -16.62791 -15.86548 -15.63264 -15.18366 -14.75982 -14.63917 -14.49966 -13.94733 -13.84286 -13.60988 -13.39672 -13.27949 -13.05476 -12.69804 -12.67941 -12.47802 -12.44654 -12.09015 -11.63665 -11.55761 -11.44191 -11.24811 -11.10590 -11.06979 -10.67489 -10.63855 -10.58598 -10.46269 -10.03287 -9.76772 -9.66940 -9.33598 -9.29771 -8.70424 -8.34434 -7.88179 -6.54658 -5.45956 -2.73185 2.50114 3.02129 3.52401 3.54677 3.58241 3.60148 3.62616 4.15715 4.24638 4.37490 4.41210 4.48436 4.67697 4.74834 4.88676 5.01107 5.08854 5.17895 5.23486 5.33252 5.38003 5.41891 5.48163 5.49452 5.54439 5.57430 5.71008 5.73463 5.79375 5.82052 5.85670 5.93247 5.96862 6.05785 6.13248 6.34145 6.41094 6.53606 6.59162 6.97082 7.34765 7.38570 7.57556 7.80795 7.93882 8.12195 8.25790 9.20525 9.31430 10.03274 10.86231 11.73207 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.017173 B = 0.003213 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.103803 B = 8712.430505 C = 9147.362556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 C -0.113 4.113 4 C -0.139 4.139 5 C 0.525 3.475 6 O -0.540 6.540 7 N -0.717 5.717 8 C 0.134 3.866 9 H 0.108 0.892 10 C -0.166 4.166 11 C 0.488 3.512 12 O -0.423 6.423 13 N -0.610 5.610 14 C 0.104 3.896 15 C 0.157 3.843 16 N -0.587 5.587 17 C -0.185 4.185 18 H 0.069 0.931 19 C 0.000 4.000 20 N -0.921 5.921 21 Si 0.902 3.098 22 H -0.284 1.284 23 H -0.296 1.296 24 H -0.294 1.294 25 C 0.104 3.896 26 C 0.105 3.895 27 C -0.118 4.118 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.403 0.597 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.031 0.969 40 H 0.078 0.922 41 H 0.245 0.755 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.106 -19.078 -15.025 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.135 4.135 3 C -0.151 4.151 4 C -0.160 4.160 5 C 0.312 3.688 6 O -0.416 6.416 7 N -0.369 5.369 8 C 0.028 3.972 9 H 0.125 0.875 10 C -0.208 4.208 11 C 0.271 3.729 12 O -0.288 6.288 13 N -0.348 5.348 14 C 0.000 4.000 15 C 0.030 3.970 16 N -0.313 5.313 17 C -0.312 4.312 18 H 0.087 0.913 19 C -0.195 4.195 20 N -0.570 5.570 21 Si 0.734 3.266 22 H -0.210 1.210 23 H -0.224 1.224 24 H -0.221 1.221 25 C -0.024 4.024 26 C -0.020 4.020 27 C -0.156 4.156 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.131 0.869 35 H 0.237 0.763 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.048 0.952 40 H 0.096 0.904 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.104 0.896 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.156 -17.784 -15.166 23.373 hybrid contribution -0.783 0.743 0.370 1.141 sum -0.626 -17.041 -14.796 22.577 Atomic orbital electron populations 1.21622 0.93676 1.01907 1.02201 1.22313 0.95933 0.97797 0.97446 1.22897 1.02416 0.96743 0.93064 1.22801 0.97366 0.97830 0.97994 1.20521 0.88268 0.78146 0.81874 1.90690 1.40635 1.46352 1.63946 1.46037 1.22185 1.61990 1.06663 1.21828 0.89553 0.93008 0.92764 0.87451 1.22817 1.03893 0.96271 0.97844 1.20705 0.81179 0.84107 0.86898 1.91178 1.37389 1.29035 1.71217 1.47839 1.59994 1.13951 1.13036 1.22917 0.96219 0.99340 0.81569 1.22520 0.90856 0.90128 0.93468 1.45529 1.10380 0.99561 1.75801 1.18672 0.94341 0.82721 1.35515 0.91313 1.24504 0.96134 0.96719 1.02157 1.69783 1.10834 1.25214 1.51181 0.86196 0.78649 0.85040 0.76729 1.20954 1.22387 1.22125 1.22981 0.93772 0.88390 0.97258 1.22175 0.98210 0.92713 0.88858 1.22903 1.01836 0.93258 0.97609 0.92187 0.92352 0.92334 0.90246 0.90971 0.88678 0.86923 0.76258 0.88808 0.87932 0.90328 0.95182 0.90421 0.94504 0.94458 0.94499 0.90384 0.90636 0.89642 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.59 37.15 0.36 -0.45 16 2 C -0.12 -0.78 4.54 -89.81 -0.41 -1.18 16 3 C -0.11 -0.97 7.00 -25.92 -0.18 -1.15 16 4 C -0.14 -1.19 3.80 -90.96 -0.35 -1.54 16 5 C 0.53 6.03 7.35 -10.99 -0.08 5.95 16 6 O -0.54 -8.11 15.64 5.55 0.09 -8.02 16 7 N -0.72 -7.50 5.17 -52.14 -0.27 -7.77 16 8 C 0.13 1.54 3.42 -66.21 -0.23 1.31 16 9 H 0.11 1.17 7.73 -51.92 -0.40 0.77 16 10 C -0.17 -2.54 6.58 -26.74 -0.18 -2.71 16 11 C 0.49 9.69 7.50 -10.86 -0.08 9.61 16 12 O -0.42 -11.16 13.03 5.56 0.07 -11.08 16 13 N -0.61 -10.01 3.16 -166.52 -0.53 -10.54 16 14 C 0.10 1.86 4.93 -70.14 -0.35 1.52 16 15 C 0.16 3.74 6.56 -2.97 -0.02 3.72 16 16 N -0.59 -15.37 2.19 -178.09 -0.39 -15.76 16 17 C -0.18 -5.47 8.91 -15.06 -0.13 -5.61 16 18 H 0.07 2.03 7.83 -52.48 -0.41 1.62 16 19 C 0.00 0.00 5.34 -17.43 -0.09 -0.09 16 20 N -0.92 -28.86 11.38 55.49 0.63 -28.23 16 21 Si 0.90 24.06 29.55 -169.99 -5.02 19.04 16 22 H -0.28 -7.37 7.11 56.52 0.40 -6.96 16 23 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 24 H -0.29 -7.99 7.11 56.52 0.40 -7.59 16 25 C 0.10 2.11 8.51 -2.97 -0.03 2.08 16 26 C 0.10 1.15 6.98 -3.03 -0.02 1.13 16 27 C -0.12 -0.80 7.19 -25.92 -0.19 -0.99 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.35 7.35 -51.93 -0.38 -0.03 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 33 H 0.09 0.95 7.43 -51.93 -0.39 0.56 16 34 H 0.11 0.88 7.66 -51.93 -0.40 0.48 16 35 H 0.40 3.62 8.59 -40.82 -0.35 3.27 16 36 H 0.09 1.54 8.09 -51.93 -0.42 1.12 16 37 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 2.14 6.74 -51.93 -0.35 1.79 16 41 H 0.24 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 46 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 47 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 LS Contribution 375.00 15.07 5.65 5.65 Total: -1.00 -37.38 375.00 -9.45 -46.83 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.72 Total: -1.73 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: -1.97 Total: 11.60 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.55 Total: -62.29 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.16 Total: -19.11 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -5.02 Total: 19.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.38 -9.45 -46.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094720904.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.652 kcal (2) G-P(sol) polarization free energy of solvation -37.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds