Wall clock time and date at job start Fri Apr 10 2020 18:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53781 * 113.61827 * 2 1 4 4 C 1.53780 * 87.08177 * 89.20381 * 3 2 1 5 5 C 1.50693 * 113.61502 * 139.98213 * 4 3 2 6 6 O 1.21284 * 120.00105 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99988 * 179.97438 * 5 4 3 8 8 C 1.46502 * 120.00234 * 180.02562 * 7 5 4 9 9 H 1.09009 * 110.85362 * 322.66260 * 8 7 5 10 10 C 1.54622 * 110.97328 * 86.45488 * 8 7 5 11 11 C 1.51283 * 104.19616 * 93.32141 * 10 8 7 12 12 O 1.21276 * 124.94107 * 196.27685 * 11 10 8 13 13 N 1.34414 * 110.11033 * 16.25490 * 11 10 8 14 14 C 1.46510 * 124.34673 * 180.40693 * 13 11 10 15 15 C 1.53946 * 113.84020 * 321.37865 * 14 13 11 16 16 N 1.47580 * 86.11645 * 90.74870 * 15 14 13 17 17 C 1.36940 * 134.49194 * 204.64076 * 16 15 14 18 18 H 1.08004 * 119.99910 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00130 * 0.02562 * 17 16 15 20 20 N 1.31623 * 119.99843 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00040 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47249 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47360 * 120.00281 * 21 19 17 24 24 H 1.48499 * 109.47453 * 240.00193 * 21 19 17 25 25 C 1.47585 * 91.01539 * 24.64210 * 16 15 14 26 26 C 1.46762 * 111.30495 * 0.67330 * 13 11 10 27 27 C 1.53777 * 113.69284 * 97.53958 * 2 1 3 28 28 H 1.09001 * 109.47513 * 59.99496 * 1 2 3 29 29 H 1.08996 * 109.47582 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47051 * 300.00000 * 1 2 3 31 31 H 1.09002 * 112.84778 * 228.80243 * 2 1 3 32 32 H 1.08998 * 113.61276 * 334.64697 * 3 2 1 33 33 H 1.09005 * 113.61575 * 203.75188 * 3 2 1 34 34 H 1.09003 * 113.61027 * 270.80176 * 4 3 2 35 35 H 0.97002 * 120.00159 * 0.02562 * 7 5 4 36 36 H 1.09005 * 110.48236 * 334.64799 * 10 8 7 37 37 H 1.08996 * 110.49092 * 212.00057 * 10 8 7 38 38 H 1.09002 * 112.94617 * 189.69252 * 14 13 11 39 39 H 1.08996 * 113.77105 * 205.05282 * 15 14 13 40 40 H 1.09002 * 113.76556 * 336.45215 * 15 14 13 41 41 H 0.96992 * 119.99795 * 179.97438 * 20 19 17 42 42 H 1.08996 * 113.76681 * 221.05446 * 25 16 15 43 43 H 1.08994 * 113.76726 * 89.65745 * 25 16 15 44 44 H 1.09000 * 110.24609 * 101.72056 * 26 13 11 45 45 H 1.09001 * 110.24110 * 223.71552 * 26 13 11 46 46 H 1.09006 * 113.61838 * 156.32115 * 27 2 1 47 47 H 1.08994 * 113.61881 * 25.41265 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 2.0951 1.3458 1.5357 5 6 3.3109 1.9332 2.2046 6 8 4.2089 2.3953 1.5330 7 7 3.4005 1.9451 3.5494 8 6 4.5822 2.5167 4.1998 9 1 5.4853 2.2892 3.6332 10 6 4.4222 4.0419 4.3969 11 6 3.8518 4.1780 5.7914 12 8 3.3209 5.1762 6.2304 13 7 4.0185 3.0315 6.4729 14 6 3.5728 2.8173 7.8520 15 6 3.7653 4.0415 8.7654 16 7 2.4009 4.4321 8.3609 17 6 1.7222 5.6198 8.2957 18 1 0.6976 5.6382 7.9547 19 6 2.3512 6.7999 8.6678 20 7 3.6001 6.7775 9.0829 21 14 1.4258 8.4200 8.5782 22 1 0.0472 8.1759 8.0829 23 1 1.3644 9.0306 9.9306 24 1 2.1296 9.3416 7.6506 25 6 2.0615 3.0288 8.0548 26 6 4.7100 2.0239 5.6602 27 6 2.1478 -0.1848 1.3960 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.9532 -0.6616 -0.7558 32 1 1.4940 2.1706 -0.4276 33 1 3.1586 1.4428 -0.4023 34 1 1.1601 1.7152 1.9570 35 1 2.6825 1.5752 4.0866 36 1 3.7307 4.4512 3.6603 37 1 5.3900 4.5389 4.3304 38 1 3.9471 1.8873 8.2799 39 1 3.8555 3.7911 9.8224 40 1 4.5389 4.7284 8.4221 41 1 4.0397 7.6021 9.3426 42 1 1.4747 2.9073 7.1444 43 1 1.6512 2.4811 8.9031 44 1 5.7590 1.9609 5.9496 45 1 4.2279 1.0528 5.7729 46 1 3.1609 -0.5867 1.3754 47 1 1.4973 -0.7096 2.0955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094720904.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:07 Heat of formation + Delta-G solvation = 6.497242 kcal Electronic energy + Delta-G solvation = -28176.330164 eV Core-core repulsion = 24361.528885 eV Total energy + Delta-G solvation = -3814.801279 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.84964 -41.07724 -39.17651 -38.43433 -37.21717 -34.91679 -33.89168 -31.62376 -30.32836 -29.12580 -28.24491 -26.56018 -26.46678 -25.82928 -25.09090 -22.62792 -22.11376 -21.50303 -19.50693 -19.22662 -18.67820 -18.49382 -17.85291 -17.23539 -16.76913 -16.49161 -16.15012 -16.05137 -15.54738 -15.39016 -15.11246 -14.98849 -14.54044 -14.38254 -14.12540 -13.94306 -13.86778 -13.45046 -13.25111 -13.20224 -13.16606 -12.99875 -12.80804 -12.66137 -12.47765 -12.39142 -12.14045 -11.90584 -11.87437 -11.55909 -11.36526 -11.22433 -11.15271 -10.78354 -10.65647 -10.41317 -9.94319 -9.32714 -8.61499 -7.71655 -4.95635 1.38353 1.42224 1.48841 1.61353 2.01127 2.17790 2.25959 2.56300 3.43535 3.46035 3.54290 3.54924 3.62533 3.67924 3.76299 3.82958 3.90273 3.98605 4.20514 4.28148 4.48755 4.57204 4.64378 4.65879 4.68510 4.71995 4.79233 4.84096 4.85773 4.87339 4.92940 4.97699 4.98741 5.08516 5.15858 5.26745 5.27697 5.37460 5.40005 5.48611 5.59852 5.64134 6.07852 6.17821 6.52921 6.55071 7.09045 7.25747 7.72000 7.83512 8.75273 9.47126 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.017173 B = 0.003213 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.103803 B = 8712.430505 C = 9147.362556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 C -0.122 4.122 4 C -0.139 4.139 5 C 0.523 3.477 6 O -0.579 6.579 7 N -0.709 5.709 8 C 0.147 3.853 9 H 0.121 0.879 10 C -0.159 4.159 11 C 0.477 3.523 12 O -0.502 6.502 13 N -0.606 5.606 14 C 0.135 3.865 15 C 0.148 3.852 16 N -0.617 5.617 17 C -0.177 4.177 18 H 0.060 0.940 19 C -0.061 4.061 20 N -0.949 5.949 21 Si 0.954 3.046 22 H -0.272 1.272 23 H -0.293 1.293 24 H -0.306 1.306 25 C 0.105 3.895 26 C 0.108 3.892 27 C -0.107 4.107 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.413 0.587 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.139 0.861 39 H 0.027 0.973 40 H 0.031 0.969 41 H 0.234 0.766 42 H 0.039 0.961 43 H 0.064 0.936 44 H 0.104 0.896 45 H 0.116 0.884 46 H 0.083 0.917 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.629 -22.931 -15.582 27.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 C -0.160 4.160 4 C -0.160 4.160 5 C 0.311 3.689 6 O -0.459 6.459 7 N -0.360 5.360 8 C 0.041 3.959 9 H 0.139 0.861 10 C -0.201 4.201 11 C 0.263 3.737 12 O -0.374 6.374 13 N -0.342 5.342 14 C 0.031 3.969 15 C 0.022 3.978 16 N -0.343 5.343 17 C -0.307 4.307 18 H 0.078 0.922 19 C -0.252 4.252 20 N -0.601 5.601 21 Si 0.786 3.214 22 H -0.197 1.197 23 H -0.220 1.220 24 H -0.234 1.234 25 C -0.021 4.021 26 C -0.014 4.014 27 C -0.145 4.145 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.142 0.858 35 H 0.250 0.750 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.156 0.844 39 H 0.044 0.956 40 H 0.050 0.950 41 H 0.043 0.957 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.122 0.878 45 H 0.134 0.866 46 H 0.101 0.899 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.387 -21.749 -15.731 26.844 hybrid contribution -0.620 1.867 0.468 2.022 sum -1.007 -19.882 -15.263 25.085 Atomic orbital electron populations 1.21630 0.92871 1.02624 1.02222 1.22289 0.96464 0.96238 0.97690 1.22911 1.01590 0.98285 0.93219 1.22890 0.96327 0.99272 0.97484 1.21039 0.88518 0.77338 0.81970 1.90677 1.42266 1.48127 1.64810 1.45996 1.22213 1.61317 1.06518 1.21762 0.90481 0.89906 0.93766 0.86076 1.22730 1.03181 0.99639 0.94575 1.21433 0.79985 0.83833 0.88456 1.91135 1.41089 1.31983 1.73177 1.47941 1.59147 1.14348 1.12755 1.22590 0.94391 0.98676 0.81283 1.22475 0.88726 0.92155 0.94473 1.45825 1.11638 1.00909 1.75936 1.18850 0.93966 0.84674 1.33165 0.92248 1.25139 0.97031 0.99459 1.03606 1.69971 1.12087 1.24826 1.53229 0.85343 0.77999 0.81712 0.76385 1.19726 1.22029 1.23431 1.23216 0.95716 0.85185 0.98018 1.22531 0.99555 0.92495 0.86809 1.22878 1.02153 0.91590 0.97892 0.92250 0.91255 0.92317 0.89696 0.91246 0.90509 0.85846 0.75028 0.90520 0.87521 0.84359 0.95553 0.95008 0.95681 0.94276 0.91844 0.87795 0.86580 0.89852 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.59 71.98 0.69 -0.57 16 2 C -0.11 -1.21 4.54 -10.27 -0.05 -1.25 16 3 C -0.12 -1.98 7.00 31.12 0.22 -1.76 16 4 C -0.14 -2.11 3.80 -11.02 -0.04 -2.15 16 5 C 0.52 11.12 7.35 87.65 0.64 11.76 16 6 O -0.58 -16.99 15.64 -3.04 -0.05 -17.04 16 7 N -0.71 -12.76 5.17 -437.25 -2.26 -15.02 16 8 C 0.15 2.93 3.42 46.11 0.16 3.09 16 9 H 0.12 2.24 7.73 -2.38 -0.02 2.22 16 10 C -0.16 -4.78 6.58 30.59 0.20 -4.58 16 11 C 0.48 18.90 7.50 87.90 0.66 19.56 16 12 O -0.50 -27.53 13.03 -3.02 -0.04 -27.57 16 13 N -0.61 -18.20 3.16 -799.36 -2.52 -20.73 16 14 C 0.13 4.40 4.93 46.75 0.23 4.63 16 15 C 0.15 7.06 6.56 86.48 0.57 7.63 16 16 N -0.62 -32.45 2.19 -717.36 -1.57 -34.02 16 17 C -0.18 -10.76 8.91 84.03 0.75 -10.01 16 18 H 0.06 3.60 7.83 -2.91 -0.02 3.57 16 19 C -0.06 -3.79 5.34 84.86 0.45 -3.34 16 20 N -0.95 -62.11 11.38 21.65 0.25 -61.87 16 21 Si 0.95 51.26 29.55 68.60 2.03 53.29 16 22 H -0.27 -13.89 7.11 99.48 0.71 -13.18 16 23 H -0.29 -15.37 7.11 99.48 0.71 -14.66 16 24 H -0.31 -16.86 7.11 99.48 0.71 -16.16 16 25 C 0.10 3.99 8.51 86.48 0.74 4.72 16 26 C 0.11 1.85 6.98 86.89 0.61 2.45 16 27 C -0.11 -1.14 7.19 31.12 0.22 -0.92 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.55 7.35 -2.38 -0.02 0.53 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 1.12 8.10 -2.39 -0.02 1.11 16 33 H 0.08 1.53 7.43 -2.38 -0.02 1.52 16 34 H 0.12 1.63 7.66 -2.39 -0.02 1.61 16 35 H 0.41 5.83 8.59 -92.71 -0.80 5.03 16 36 H 0.08 2.56 8.09 -2.38 -0.02 2.54 16 37 H 0.11 3.08 8.14 -2.39 -0.02 3.07 16 38 H 0.14 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.03 1.80 6.74 -2.39 -0.02 1.79 16 41 H 0.23 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.12 1.20 8.05 -2.39 -0.02 1.18 16 46 H 0.08 0.95 8.09 -2.38 -0.02 0.93 16 47 H 0.09 0.69 8.10 -2.39 -0.02 0.67 16 Total: -1.00 -88.47 375.00 2.06 -86.41 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.17 Total: 7.27 kcal Atomic # 6 Polarization: 23.22 SS G_CDS: 6.05 Total: 29.27 kcal Atomic # 7 Polarization: -125.53 SS G_CDS: -6.10 Total: -131.63 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -0.09 Total: -44.61 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 2.03 Total: 53.29 kcal Total: -88.47 2.06 -86.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094720904.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.910 kcal (2) G-P(sol) polarization free energy of solvation -88.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds