Wall clock time and date at job start Fri Apr 10 2020 18:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 115.56330 * 2 1 4 4 C 1.52999 * 117.49872 * 214.30339 * 2 1 3 5 5 C 1.53002 * 60.00095 * 252.51303 * 4 2 1 6 6 H 1.08997 * 117.52103 * 252.52131 * 5 4 2 7 7 C 1.50703 * 117.49937 * 107.49102 * 5 4 2 8 8 O 1.21287 * 119.99513 * 291.37925 * 7 5 4 9 9 N 1.34769 * 120.00231 * 111.37906 * 7 5 4 10 10 C 1.46504 * 120.00089 * 180.27703 * 9 7 5 11 11 H 1.08999 * 110.85703 * 325.42422 * 10 9 7 12 12 C 1.54628 * 110.97021 * 89.21368 * 10 9 7 13 13 C 1.51276 * 104.19723 * 142.91843 * 12 10 9 14 14 O 1.21278 * 124.94426 * 163.71665 * 13 12 10 15 15 N 1.34425 * 110.11607 * 343.74589 * 13 12 10 16 16 C 1.46495 * 124.34978 * 179.58722 * 15 13 12 17 17 C 1.53940 * 113.74493 * 36.65289 * 16 15 13 18 18 N 1.47577 * 86.12160 * 222.04596 * 17 16 15 19 19 C 1.36935 * 134.49557 * 204.64574 * 18 17 16 20 20 H 1.08006 * 120.00109 * 173.48122 * 19 18 17 21 21 C 1.38809 * 120.00110 * 353.47173 * 19 18 17 22 22 N 1.31627 * 119.99635 * 5.07321 * 21 19 18 23 23 Si 1.86801 * 120.00440 * 185.06918 * 21 19 18 24 24 H 1.48497 * 109.47015 * 94.98774 * 23 21 19 25 25 H 1.48494 * 109.47267 * 214.99168 * 23 21 19 26 26 H 1.48503 * 109.46834 * 334.98936 * 23 21 19 27 27 C 1.47584 * 91.01272 * 24.63897 * 18 17 16 28 28 C 1.46824 * 111.31382 * 359.62555 * 15 13 12 29 29 H 1.09003 * 109.47482 * 274.31960 * 1 2 3 30 30 H 1.08998 * 109.46761 * 34.31844 * 1 2 3 31 31 H 1.08996 * 109.46986 * 154.31451 * 1 2 3 32 32 H 1.09009 * 109.47151 * 205.68835 * 3 2 1 33 33 H 1.09001 * 109.46893 * 325.68286 * 3 2 1 34 34 H 1.08994 * 109.47704 * 85.68652 * 3 2 1 35 35 H 1.08999 * 117.49581 * 145.02598 * 4 2 1 36 36 H 1.08999 * 117.50041 * 0.02562 * 4 2 1 37 37 H 0.97000 * 120.00113 * 0.02562 * 9 7 5 38 38 H 1.08995 * 110.48518 * 261.59945 * 12 10 9 39 39 H 1.09004 * 110.48956 * 24.10813 * 12 10 9 40 40 H 1.09000 * 112.94495 * 168.38480 * 16 15 13 41 41 H 1.09005 * 113.76768 * 336.35158 * 17 16 15 42 42 H 1.09008 * 113.77056 * 107.73943 * 17 16 15 43 43 H 0.97000 * 119.99755 * 179.97438 * 22 21 19 44 44 H 1.08997 * 113.76585 * 221.06344 * 27 18 17 45 45 H 1.08992 * 113.77145 * 89.65910 * 27 18 17 46 46 H 1.09001 * 110.23585 * 257.98270 * 28 15 13 47 47 H 1.09001 * 110.28229 * 135.96450 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1211 -0.7648 5 6 2.2364 -1.1209 0.7652 6 1 3.1712 -0.8750 1.2688 7 6 1.3719 -2.1405 1.4611 8 8 0.1637 -2.0531 1.4014 9 7 1.9414 -3.1493 2.1498 10 6 1.1010 -4.1439 2.8212 11 1 0.1889 -3.6863 3.2042 12 6 0.7737 -5.3218 1.8743 13 6 0.7956 -6.5380 2.7737 14 8 0.3221 -7.6185 2.4925 15 7 1.4158 -6.2466 3.9302 16 6 1.6038 -7.1965 5.0295 17 6 1.8849 -8.6364 4.5631 18 7 0.9645 -9.0572 5.6372 19 6 0.8040 -10.2032 6.3693 20 1 0.1031 -10.2256 7.1908 21 6 1.5420 -11.3363 6.0557 22 7 2.4669 -11.2813 5.1207 23 14 1.2227 -12.9391 6.9605 24 1 0.2759 -13.7707 6.1750 25 1 2.5017 -13.6737 7.1324 26 1 0.6367 -12.6468 8.2933 27 6 0.2864 -7.7468 5.6054 28 6 1.8798 -4.8538 3.9508 29 1 -0.3634 0.0774 1.0247 30 1 -0.3633 0.8488 -0.5794 31 1 -0.3633 -0.9261 -0.4454 32 1 3.1825 1.3083 -0.4455 33 1 1.5813 2.0742 -0.5794 34 1 2.2773 1.7414 1.0247 35 1 3.1716 -0.8753 -1.2681 36 1 1.6112 -1.8584 -1.2684 37 1 2.9077 -3.2190 2.1978 38 1 -0.2139 -5.1923 1.4318 39 1 1.5315 -5.4071 1.0955 40 1 2.2979 -6.8360 5.7886 41 1 1.5177 -8.8529 3.5599 42 1 2.9158 -8.9551 4.7180 43 1 2.9829 -12.0729 4.9018 44 1 0.0410 -7.3551 6.5925 45 1 -0.5503 -7.7018 4.9084 46 1 2.9513 -4.8104 3.7552 47 1 1.6523 -4.3939 4.9125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094726190.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:10 Heat of formation + Delta-G solvation = 22.878155 kcal Electronic energy + Delta-G solvation = -27125.589005 eV Core-core repulsion = 23311.498056 eV Total energy + Delta-G solvation = -3814.090949 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.89302 -40.10221 -37.87904 -37.10663 -36.25036 -34.13142 -32.19590 -30.62505 -29.60074 -27.76678 -27.57767 -27.12662 -24.74529 -24.57992 -23.33950 -21.75993 -20.87795 -20.37839 -19.43082 -18.32971 -17.59884 -16.83067 -16.58109 -16.25445 -15.51252 -15.38880 -14.84294 -14.74635 -14.47335 -14.21085 -13.91942 -13.87179 -13.61145 -13.49400 -13.47040 -13.14841 -12.86209 -12.42317 -12.35721 -12.18462 -12.02342 -11.83606 -11.60364 -11.56203 -11.40471 -11.15108 -10.83807 -10.70975 -10.60292 -10.26613 -10.18850 -9.98110 -9.83348 -9.59417 -9.48803 -9.14235 -8.63343 -8.18287 -6.79180 -5.73186 -3.04054 2.18591 2.65845 2.93346 3.27614 3.38721 3.43108 3.48933 3.49733 4.15258 4.24739 4.30795 4.40389 4.48007 4.52490 4.71522 4.72390 4.83445 4.89983 5.16749 5.24331 5.28621 5.31458 5.34280 5.38004 5.52304 5.54502 5.57058 5.65990 5.67162 5.68261 5.70355 5.73259 5.85121 5.86151 6.12999 6.25979 6.30151 6.52802 6.59729 6.88573 7.16756 7.28062 7.49564 7.59626 7.66326 7.94169 8.01793 8.56131 9.09056 9.75067 10.65160 11.44720 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.044345 B = 0.002165 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.261325 B =12928.985118 C =12939.868660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.094 4.094 3 C -0.117 4.117 4 C -0.146 4.146 5 C -0.190 4.190 6 H 0.123 0.877 7 C 0.545 3.455 8 O -0.529 6.529 9 N -0.718 5.718 10 C 0.135 3.865 11 H 0.111 0.889 12 C -0.167 4.167 13 C 0.515 3.485 14 O -0.506 6.506 15 N -0.606 5.606 16 C 0.097 3.903 17 C 0.155 3.845 18 N -0.605 5.605 19 C -0.222 4.222 20 H 0.081 0.919 21 C -0.007 4.007 22 N -0.917 5.917 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.111 3.889 28 C 0.099 3.901 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.403 0.597 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.254 0.746 44 H 0.042 0.958 45 H 0.039 0.961 46 H 0.073 0.927 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.732 27.177 -9.802 29.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.094 4.094 3 C -0.174 4.174 4 C -0.184 4.184 5 C -0.211 4.211 6 H 0.141 0.859 7 C 0.332 3.668 8 O -0.405 6.405 9 N -0.370 5.370 10 C 0.030 3.970 11 H 0.129 0.871 12 C -0.208 4.208 13 C 0.301 3.699 14 O -0.381 6.381 15 N -0.341 5.341 16 C -0.005 4.005 17 C 0.029 3.971 18 N -0.331 5.331 19 C -0.349 4.349 20 H 0.099 0.901 21 C -0.204 4.204 22 N -0.563 5.563 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.205 1.205 27 C -0.017 4.017 28 C -0.026 4.026 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.238 0.762 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.091 0.909 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.678 26.248 -9.810 28.149 hybrid contribution 0.508 -1.029 0.529 1.264 sum 3.186 25.219 -9.281 27.061 Atomic orbital electron populations 1.21368 0.90533 1.01538 1.02673 1.21602 0.96076 0.90528 1.01209 1.21406 0.99974 0.93795 1.02246 1.23236 1.02938 1.01594 0.90603 1.22362 1.02002 1.00875 0.95907 0.85906 1.19695 0.88218 0.80823 0.78037 1.90734 1.14495 1.74739 1.60516 1.45914 1.10245 1.27195 1.53607 1.21793 0.95141 0.88081 0.92005 0.87083 1.22822 1.05402 0.93620 0.98982 1.20601 0.77896 0.89094 0.82300 1.90789 1.45981 1.25525 1.75772 1.48507 1.57221 1.11010 1.17401 1.24109 0.99343 0.89156 0.87924 1.22738 0.96394 0.84524 0.93478 1.45648 1.35549 1.11327 1.40595 1.18985 1.20366 0.87119 1.08463 0.90130 1.24850 0.99007 0.97766 0.98778 1.69851 1.24310 1.28475 1.33698 0.86108 0.77177 0.83726 0.78821 1.21592 1.21724 1.20537 1.22935 0.94152 0.87209 0.97379 1.22208 0.98498 0.82761 0.99108 0.91348 0.93257 0.91603 0.92265 0.91583 0.91941 0.87790 0.88126 0.76174 0.87929 0.87875 0.87685 0.92139 0.91634 0.93642 0.93946 0.94309 0.90922 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 8.09 37.16 0.30 -0.58 16 2 C -0.09 -0.64 2.70 -154.51 -0.42 -1.06 16 3 C -0.12 -0.58 9.85 37.16 0.37 -0.21 16 4 C -0.15 -0.89 9.52 -26.73 -0.25 -1.14 16 5 C -0.19 -1.24 5.91 -91.77 -0.54 -1.79 16 6 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 7 C 0.55 4.92 7.59 -10.99 -0.08 4.84 16 8 O -0.53 -6.58 12.80 5.55 0.07 -6.51 16 9 N -0.72 -5.31 5.17 -52.22 -0.27 -5.58 16 10 C 0.14 1.30 3.47 -66.30 -0.23 1.07 16 11 H 0.11 1.18 7.64 -51.93 -0.40 0.78 16 12 C -0.17 -2.03 6.59 -26.74 -0.18 -2.21 16 13 C 0.52 8.85 7.44 -10.86 -0.08 8.77 16 14 O -0.51 -11.48 14.64 5.56 0.08 -11.40 16 15 N -0.61 -9.36 3.15 -166.59 -0.53 -9.89 16 16 C 0.10 1.86 4.82 -70.15 -0.34 1.52 16 17 C 0.15 3.89 6.79 -2.98 -0.02 3.87 16 18 N -0.60 -16.48 3.70 -178.08 -0.66 -17.14 16 19 C -0.22 -6.51 10.70 -15.06 -0.16 -6.67 16 20 H 0.08 2.27 7.83 -52.48 -0.41 1.86 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 22 N -0.92 -28.32 11.51 55.49 0.64 -27.68 16 23 Si 0.91 22.87 29.56 -169.99 -5.02 17.84 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.11 2.44 8.45 -2.97 -0.03 2.41 16 28 C 0.10 0.98 7.08 -3.09 -0.02 0.96 16 29 H 0.07 0.68 7.26 -51.93 -0.38 0.30 16 30 H 0.05 0.35 7.92 -51.93 -0.41 -0.06 16 31 H 0.06 0.66 7.01 -51.93 -0.36 0.29 16 32 H 0.06 0.23 7.90 -51.92 -0.41 -0.18 16 33 H 0.07 0.30 7.92 -51.93 -0.41 -0.11 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.10 0.45 8.05 -51.93 -0.42 0.04 16 36 H 0.10 0.71 8.05 -51.93 -0.42 0.29 16 37 H 0.40 1.92 8.39 -40.82 -0.34 1.58 16 38 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 40 H 0.11 1.80 8.14 -51.93 -0.42 1.37 16 41 H 0.06 1.69 5.58 -51.93 -0.29 1.40 16 42 H 0.07 1.77 7.35 -51.92 -0.38 1.39 16 43 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.04 0.91 7.41 -51.93 -0.38 0.53 16 46 H 0.07 0.58 7.78 -51.93 -0.40 0.18 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 377.70 15.07 5.69 5.69 Total: -1.00 -36.82 377.70 -9.29 -46.11 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.51 Total: -0.93 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: -1.78 Total: 9.48 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.81 Total: -60.29 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.15 Total: -17.91 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.82 -9.29 -46.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094726190.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.988 kcal (2) G-P(sol) polarization free energy of solvation -36.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds