Wall clock time and date at job start Fri Apr 10 2020 18:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 115.56330 * 2 1 4 4 C 1.52999 * 117.49872 * 214.30339 * 2 1 3 5 5 C 1.53002 * 60.00095 * 252.51303 * 4 2 1 6 6 H 1.08997 * 117.52103 * 252.52131 * 5 4 2 7 7 C 1.50703 * 117.49937 * 107.49102 * 5 4 2 8 8 O 1.21287 * 119.99513 * 291.37925 * 7 5 4 9 9 N 1.34769 * 120.00231 * 111.37906 * 7 5 4 10 10 C 1.46504 * 120.00089 * 180.27703 * 9 7 5 11 11 H 1.08999 * 110.85703 * 325.42422 * 10 9 7 12 12 C 1.54628 * 110.97021 * 89.21368 * 10 9 7 13 13 C 1.51276 * 104.19723 * 142.91843 * 12 10 9 14 14 O 1.21278 * 124.94426 * 163.71665 * 13 12 10 15 15 N 1.34425 * 110.11607 * 343.74589 * 13 12 10 16 16 C 1.46495 * 124.34978 * 179.58722 * 15 13 12 17 17 C 1.53940 * 113.74493 * 36.65289 * 16 15 13 18 18 N 1.47577 * 86.12160 * 222.04596 * 17 16 15 19 19 C 1.36935 * 134.49557 * 204.64574 * 18 17 16 20 20 H 1.08006 * 120.00109 * 173.48122 * 19 18 17 21 21 C 1.38809 * 120.00110 * 353.47173 * 19 18 17 22 22 N 1.31627 * 119.99635 * 5.07321 * 21 19 18 23 23 Si 1.86801 * 120.00440 * 185.06918 * 21 19 18 24 24 H 1.48497 * 109.47015 * 94.98774 * 23 21 19 25 25 H 1.48494 * 109.47267 * 214.99168 * 23 21 19 26 26 H 1.48503 * 109.46834 * 334.98936 * 23 21 19 27 27 C 1.47584 * 91.01272 * 24.63897 * 18 17 16 28 28 C 1.46824 * 111.31382 * 359.62555 * 15 13 12 29 29 H 1.09003 * 109.47482 * 274.31960 * 1 2 3 30 30 H 1.08998 * 109.46761 * 34.31844 * 1 2 3 31 31 H 1.08996 * 109.46986 * 154.31451 * 1 2 3 32 32 H 1.09009 * 109.47151 * 205.68835 * 3 2 1 33 33 H 1.09001 * 109.46893 * 325.68286 * 3 2 1 34 34 H 1.08994 * 109.47704 * 85.68652 * 3 2 1 35 35 H 1.08999 * 117.49581 * 145.02598 * 4 2 1 36 36 H 1.08999 * 117.50041 * 0.02562 * 4 2 1 37 37 H 0.97000 * 120.00113 * 0.02562 * 9 7 5 38 38 H 1.08995 * 110.48518 * 261.59945 * 12 10 9 39 39 H 1.09004 * 110.48956 * 24.10813 * 12 10 9 40 40 H 1.09000 * 112.94495 * 168.38480 * 16 15 13 41 41 H 1.09005 * 113.76768 * 336.35158 * 17 16 15 42 42 H 1.09008 * 113.77056 * 107.73943 * 17 16 15 43 43 H 0.97000 * 119.99755 * 179.97438 * 22 21 19 44 44 H 1.08997 * 113.76585 * 221.06344 * 27 18 17 45 45 H 1.08992 * 113.77145 * 89.65910 * 27 18 17 46 46 H 1.09001 * 110.23585 * 257.98270 * 28 15 13 47 47 H 1.09001 * 110.28229 * 135.96450 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1211 -0.7648 5 6 2.2364 -1.1209 0.7652 6 1 3.1712 -0.8750 1.2688 7 6 1.3719 -2.1405 1.4611 8 8 0.1637 -2.0531 1.4014 9 7 1.9414 -3.1493 2.1498 10 6 1.1010 -4.1439 2.8212 11 1 0.1889 -3.6863 3.2042 12 6 0.7737 -5.3218 1.8743 13 6 0.7956 -6.5380 2.7737 14 8 0.3221 -7.6185 2.4925 15 7 1.4158 -6.2466 3.9302 16 6 1.6038 -7.1965 5.0295 17 6 1.8849 -8.6364 4.5631 18 7 0.9645 -9.0572 5.6372 19 6 0.8040 -10.2032 6.3693 20 1 0.1031 -10.2256 7.1908 21 6 1.5420 -11.3363 6.0557 22 7 2.4669 -11.2813 5.1207 23 14 1.2227 -12.9391 6.9605 24 1 0.2759 -13.7707 6.1750 25 1 2.5017 -13.6737 7.1324 26 1 0.6367 -12.6468 8.2933 27 6 0.2864 -7.7468 5.6054 28 6 1.8798 -4.8538 3.9508 29 1 -0.3634 0.0774 1.0247 30 1 -0.3633 0.8488 -0.5794 31 1 -0.3633 -0.9261 -0.4454 32 1 3.1825 1.3083 -0.4455 33 1 1.5813 2.0742 -0.5794 34 1 2.2773 1.7414 1.0247 35 1 3.1716 -0.8753 -1.2681 36 1 1.6112 -1.8584 -1.2684 37 1 2.9077 -3.2190 2.1978 38 1 -0.2139 -5.1923 1.4318 39 1 1.5315 -5.4071 1.0955 40 1 2.2979 -6.8360 5.7886 41 1 1.5177 -8.8529 3.5599 42 1 2.9158 -8.9551 4.7180 43 1 2.9829 -12.0729 4.9018 44 1 0.0410 -7.3551 6.5925 45 1 -0.5503 -7.7018 4.9084 46 1 2.9513 -4.8104 3.7552 47 1 1.6523 -4.3939 4.9125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094726190.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:10 Heat of formation + Delta-G solvation = -3.506028 kcal Electronic energy + Delta-G solvation = -27126.733109 eV Core-core repulsion = 23311.498056 eV Total energy + Delta-G solvation = -3815.235053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.94846 -41.04949 -39.11334 -38.36043 -37.37325 -35.23671 -34.17441 -31.83454 -30.25851 -29.19566 -28.39123 -28.28363 -26.63546 -25.53905 -24.90125 -22.63600 -22.13293 -21.47912 -20.01501 -19.79648 -18.80525 -18.27747 -17.80435 -17.45253 -16.99824 -16.45471 -16.07270 -15.93319 -15.65300 -15.31680 -15.16084 -14.95092 -14.63078 -14.50332 -14.43401 -14.07486 -13.95937 -13.62743 -13.46191 -13.41126 -13.28007 -12.90762 -12.83426 -12.75681 -12.64295 -12.59469 -12.26476 -12.07659 -12.03281 -11.90290 -11.53000 -11.13745 -11.11198 -10.83960 -10.69883 -10.38767 -10.07280 -9.59569 -8.94784 -7.96083 -5.29666 1.41362 1.45466 1.50312 1.54080 1.58048 1.82897 2.15886 2.47002 2.85042 3.22174 3.31495 3.46639 3.48531 3.69426 3.75749 3.77564 3.89548 3.95993 4.01494 4.22432 4.23302 4.25896 4.50701 4.55726 4.62971 4.72487 4.76228 4.81567 4.87663 4.88038 4.90758 4.92712 5.05256 5.13670 5.15314 5.16361 5.17217 5.23445 5.35416 5.45219 5.45923 5.59465 5.82958 5.87705 6.22672 6.58052 6.86474 7.20030 7.30186 7.55132 8.51380 9.22047 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.044345 B = 0.002165 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.261325 B =12928.985118 C =12939.868660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.105 4.105 3 C -0.113 4.113 4 C -0.139 4.139 5 C -0.186 4.186 6 H 0.153 0.847 7 C 0.541 3.459 8 O -0.568 6.568 9 N -0.701 5.701 10 C 0.151 3.849 11 H 0.105 0.895 12 C -0.153 4.153 13 C 0.503 3.497 14 O -0.573 6.573 15 N -0.605 5.605 16 C 0.136 3.864 17 C 0.150 3.850 18 N -0.635 5.635 19 C -0.238 4.238 20 H 0.087 0.913 21 C -0.070 4.070 22 N -0.953 5.953 23 Si 0.983 3.017 24 H -0.293 1.293 25 H -0.289 1.289 26 H -0.261 1.261 27 C 0.110 3.890 28 C 0.100 3.900 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.128 0.872 36 H 0.085 0.915 37 H 0.421 0.579 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.140 0.860 41 H 0.026 0.974 42 H 0.039 0.961 43 H 0.249 0.751 44 H 0.070 0.930 45 H 0.020 0.980 46 H 0.106 0.894 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.402 29.900 -8.927 31.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.106 4.106 3 C -0.170 4.170 4 C -0.177 4.177 5 C -0.207 4.207 6 H 0.171 0.829 7 C 0.329 3.671 8 O -0.447 6.447 9 N -0.354 5.354 10 C 0.045 3.955 11 H 0.123 0.877 12 C -0.195 4.195 13 C 0.292 3.708 14 O -0.452 6.452 15 N -0.338 5.338 16 C 0.032 3.968 17 C 0.024 3.976 18 N -0.362 5.362 19 C -0.367 4.367 20 H 0.105 0.895 21 C -0.263 4.263 22 N -0.601 5.601 23 Si 0.811 3.189 24 H -0.220 1.220 25 H -0.215 1.215 26 H -0.185 1.185 27 C -0.016 4.016 28 C -0.022 4.022 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.146 0.854 36 H 0.104 0.896 37 H 0.259 0.741 38 H 0.114 0.886 39 H 0.137 0.863 40 H 0.158 0.842 41 H 0.043 0.957 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.088 0.912 45 H 0.038 0.962 46 H 0.124 0.876 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.384 29.061 -8.917 30.713 hybrid contribution -0.083 -1.815 0.190 1.826 sum 4.301 27.246 -8.727 28.931 Atomic orbital electron populations 1.21269 0.92381 1.00771 1.01327 1.21675 0.94913 0.91930 1.02087 1.21396 1.00572 0.92405 1.02605 1.23290 1.03486 1.00591 0.90310 1.22440 1.02422 0.99735 0.96112 0.82924 1.20211 0.88008 0.81217 0.77679 1.90737 1.16412 1.75688 1.61840 1.45723 1.10931 1.26016 1.52766 1.21512 0.95427 0.87454 0.91134 0.87750 1.22739 1.05696 0.92246 0.98792 1.21471 0.76713 0.89399 0.83246 1.90757 1.48693 1.28519 1.77244 1.48461 1.56546 1.12929 1.15859 1.23426 0.97601 0.87200 0.88535 1.22534 0.94345 0.89154 0.91616 1.46083 1.37075 1.12423 1.40624 1.19444 1.19963 0.88409 1.08837 0.89488 1.25790 0.99029 1.01316 1.00139 1.70055 1.25419 1.28974 1.35622 0.84992 0.76797 0.78908 0.78231 1.22001 1.21550 1.18495 1.23028 0.94756 0.85307 0.98500 1.22549 1.00154 0.78991 1.00519 0.93264 0.92283 0.93786 0.90677 0.91501 0.91730 0.85374 0.89637 0.74081 0.88614 0.86316 0.84213 0.95664 0.94293 0.94194 0.91194 0.96238 0.87614 0.86994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 8.09 71.98 0.58 -1.10 16 2 C -0.11 -1.23 2.70 -52.18 -0.14 -1.37 16 3 C -0.11 -0.80 9.85 71.98 0.71 -0.09 16 4 C -0.14 -1.34 9.52 30.59 0.29 -1.05 16 5 C -0.19 -1.87 5.91 -11.54 -0.07 -1.94 16 6 H 0.15 0.64 8.14 -2.39 -0.02 0.62 16 7 C 0.54 8.58 7.59 87.66 0.67 9.25 16 8 O -0.57 -13.78 12.80 -3.05 -0.04 -13.82 16 9 N -0.70 -8.02 5.17 -437.53 -2.26 -10.29 16 10 C 0.15 2.51 3.47 46.05 0.16 2.67 16 11 H 0.10 1.99 7.64 -2.39 -0.02 1.97 16 12 C -0.15 -3.59 6.59 30.59 0.20 -3.39 16 13 C 0.50 17.45 7.44 87.90 0.65 18.11 16 14 O -0.57 -27.48 14.64 -3.02 -0.04 -27.52 16 15 N -0.60 -17.71 3.15 -799.57 -2.52 -20.23 16 16 C 0.14 5.05 4.82 46.75 0.23 5.28 16 17 C 0.15 7.80 6.79 86.48 0.59 8.38 16 18 N -0.64 -35.31 3.70 -717.33 -2.65 -37.96 16 19 C -0.24 -14.20 10.70 84.03 0.90 -13.30 16 20 H 0.09 4.90 7.83 -2.91 -0.02 4.88 16 21 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 22 N -0.95 -60.87 11.51 21.65 0.25 -60.63 16 23 Si 0.98 47.80 29.56 68.60 2.03 49.82 16 24 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 27 C 0.11 4.84 8.45 86.48 0.73 5.57 16 28 C 0.10 1.58 7.08 86.82 0.61 2.20 16 29 H 0.05 1.00 7.26 -2.39 -0.02 0.98 16 30 H 0.06 0.82 7.92 -2.39 -0.02 0.80 16 31 H 0.04 0.91 7.01 -2.39 -0.02 0.89 16 32 H 0.07 0.31 7.90 -2.38 -0.02 0.29 16 33 H 0.07 0.46 7.92 -2.39 -0.02 0.45 16 34 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.13 0.63 8.05 -2.39 -0.02 0.61 16 36 H 0.09 1.10 8.05 -2.39 -0.02 1.08 16 37 H 0.42 2.06 8.39 -92.71 -0.78 1.28 16 38 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.12 2.42 8.08 -2.39 -0.02 2.41 16 40 H 0.14 4.30 8.14 -2.39 -0.02 4.28 16 41 H 0.03 1.51 5.58 -2.38 -0.01 1.50 16 42 H 0.04 2.19 7.35 -2.38 -0.02 2.17 16 43 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.02 0.95 7.41 -2.39 -0.02 0.93 16 46 H 0.11 1.10 7.78 -2.39 -0.02 1.08 16 47 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -86.86 377.70 1.54 -85.32 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.20 Total: 9.84 kcal Atomic # 6 Polarization: 18.89 SS G_CDS: 6.58 Total: 25.47 kcal Atomic # 7 Polarization: -121.92 SS G_CDS: -7.18 Total: -129.11 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -0.08 Total: -41.35 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.82 kcal Total: -86.86 1.54 -85.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094726190.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.818 kcal (2) G-P(sol) polarization free energy of solvation -86.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds