Wall clock time and date at job start Fri Apr 10 2020 18:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 112.85123 * 2 1 4 4 O 1.21278 * 119.99838 * 230.32960 * 3 2 1 5 5 N 1.34780 * 119.99638 * 50.32874 * 3 2 1 6 6 C 1.46497 * 119.99524 * 180.02562 * 5 3 2 7 7 H 1.09000 * 110.85934 * 31.21210 * 6 5 3 8 8 C 1.54632 * 110.97080 * 267.37819 * 6 5 3 9 9 C 1.51282 * 104.19804 * 266.68352 * 8 6 5 10 10 O 1.21281 * 124.94611 * 163.76622 * 9 8 6 11 11 N 1.34417 * 110.11559 * 343.74867 * 9 8 6 12 12 C 1.46498 * 124.35328 * 179.85923 * 11 9 8 13 13 C 1.53954 * 113.73933 * 38.43753 * 12 11 9 14 14 N 1.47813 * 86.03377 * 222.08703 * 13 12 11 15 15 C 1.36936 * 134.45115 * 204.64543 * 14 13 12 16 16 H 1.08005 * 119.99712 * 173.34727 * 15 14 13 17 17 C 1.38810 * 120.00644 * 353.34638 * 15 14 13 18 18 N 1.31625 * 119.99626 * 5.06367 * 17 15 14 19 19 Si 1.86794 * 120.00424 * 185.06472 * 17 15 14 20 20 H 1.48507 * 109.46955 * 94.98873 * 19 17 15 21 21 H 1.48496 * 109.47157 * 214.98511 * 19 17 15 22 22 H 1.48495 * 109.47093 * 334.98877 * 19 17 15 23 23 C 1.47569 * 91.05331 * 24.54839 * 14 13 12 24 24 C 1.46766 * 111.30023 * 359.58948 * 11 9 8 25 25 C 1.53785 * 113.61300 * 131.19473 * 2 1 3 26 26 C 1.53958 * 87.01845 * 89.23378 * 25 2 1 27 27 C 1.53780 * 113.61668 * 228.80542 * 2 1 3 28 28 H 1.09000 * 109.46729 * 69.66833 * 1 2 3 29 29 H 1.09004 * 109.47047 * 189.66418 * 1 2 3 30 30 H 1.08998 * 109.47338 * 309.67152 * 1 2 3 31 31 H 0.96998 * 119.99897 * 0.02562 * 5 3 2 32 32 H 1.09004 * 110.48417 * 25.36302 * 8 6 5 33 33 H 1.09000 * 110.48804 * 147.87355 * 8 6 5 34 34 H 1.09005 * 112.94713 * 170.02694 * 12 11 9 35 35 H 1.09001 * 113.76949 * 336.35167 * 13 12 11 36 36 H 1.09004 * 113.76690 * 107.74944 * 13 12 11 37 37 H 0.96998 * 120.00208 * 180.02562 * 18 17 15 38 38 H 1.09000 * 113.77398 * 221.14895 * 23 14 13 39 39 H 1.09009 * 113.77461 * 89.75268 * 23 14 13 40 40 H 1.09004 * 110.24469 * 136.01833 * 24 11 9 41 41 H 1.09004 * 110.25027 * 258.01978 * 24 11 9 42 42 H 1.09000 * 113.61406 * 203.74753 * 25 2 1 43 43 H 1.08990 * 113.61456 * 334.65415 * 25 2 1 44 44 H 1.09001 * 113.53366 * 270.80848 * 26 25 2 45 45 H 1.08995 * 113.74250 * 139.94729 * 26 25 2 46 46 H 1.08996 * 113.61695 * 25.34602 * 27 2 1 47 47 H 1.09002 * 113.61660 * 156.25896 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3888 0.0000 4 8 2.9686 1.6872 -0.8085 5 7 1.6902 2.2991 0.8985 6 6 2.2587 3.6492 0.8981 7 1 2.5471 3.9486 -0.1095 8 6 3.4582 3.7449 1.8693 9 6 2.8483 4.2322 3.1652 10 8 3.3865 4.1760 4.2506 11 7 1.6232 4.7368 2.9386 12 6 0.7531 5.2930 3.9777 13 6 1.5059 6.1050 5.0473 14 7 0.6297 5.4311 6.0286 15 6 0.1877 5.7364 7.2881 16 1 -0.5501 5.1104 7.7680 17 6 0.6877 6.8504 7.9482 18 7 1.5108 7.6687 7.3274 19 14 0.1927 7.1883 9.7174 20 1 1.2166 6.6253 10.6340 21 1 0.0894 8.6541 9.9312 22 1 -1.1213 6.5539 9.9935 23 6 0.4207 4.2990 5.1053 24 6 1.2718 4.6648 1.5155 25 6 2.1460 -0.9281 1.0603 26 6 2.0951 -2.0420 -0.0013 27 6 2.1461 -0.9280 -1.0602 28 1 -0.3633 0.3571 -0.9637 29 1 -0.3633 -1.0131 0.1725 30 1 -0.3634 0.6560 0.7910 31 1 1.0080 2.0602 1.5453 32 1 3.9161 2.7655 2.0077 33 1 4.1930 4.4597 1.4988 34 1 -0.1198 5.8045 3.5721 35 1 2.5584 5.8377 5.1418 36 1 1.3435 7.1806 4.9774 37 1 1.8606 8.4470 7.7888 38 1 -0.6065 3.9352 5.0816 39 1 1.1538 3.4999 5.2168 40 1 0.2466 4.3140 1.3974 41 1 1.3934 5.6415 1.0470 42 1 3.1585 -0.6477 1.3507 43 1 1.4939 -1.1079 1.9149 44 1 1.1595 -2.6014 -0.0006 45 1 2.9738 -2.6869 -0.0031 46 1 1.4940 -1.1079 -1.9149 47 1 3.1586 -0.6477 -1.3505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094773460.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:12 Heat of formation + Delta-G solvation = 15.158126 kcal Electronic energy + Delta-G solvation = -27849.219662 eV Core-core repulsion = 24034.793948 eV Total energy + Delta-G solvation = -3814.425715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.10876 -40.24141 -38.13471 -37.16735 -36.30268 -33.98861 -32.21825 -30.78037 -29.57947 -27.58281 -27.13343 -26.00279 -25.18136 -24.75249 -23.43226 -22.18055 -20.99288 -20.43195 -18.97416 -18.29889 -17.48850 -17.06804 -16.69770 -16.29604 -15.59089 -15.36473 -15.21906 -14.80447 -14.70865 -14.22360 -13.91700 -13.88466 -13.49895 -13.37918 -13.13022 -12.85421 -12.76770 -12.64201 -12.51559 -11.93918 -11.82441 -11.71443 -11.66509 -11.47873 -11.40977 -11.34773 -10.86454 -10.84679 -10.71776 -10.64731 -10.21913 -9.97501 -9.81086 -9.60196 -9.49531 -9.14895 -8.65584 -8.18693 -6.81142 -5.74670 -3.05731 2.36904 2.84012 2.96020 3.25173 3.41745 3.47328 3.48527 4.05271 4.14611 4.24018 4.36978 4.43861 4.44828 4.50893 4.63225 4.76970 5.04311 5.07886 5.16500 5.22737 5.27835 5.35545 5.40654 5.42764 5.45616 5.52977 5.54344 5.60494 5.65891 5.66343 5.67088 5.70533 5.83718 5.84806 6.06227 6.23014 6.26521 6.49813 6.57631 6.87166 7.23617 7.26648 7.49579 7.57893 7.63905 7.97663 7.99867 8.57033 9.07054 9.73507 10.63275 11.43181 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.023597 B = 0.002744 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.309816 B =10200.318780 C =10675.278716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.112 4.112 3 C 0.532 3.468 4 O -0.538 6.538 5 N -0.718 5.718 6 C 0.132 3.868 7 H 0.116 0.884 8 C -0.167 4.167 9 C 0.512 3.488 10 O -0.509 6.509 11 N -0.609 5.609 12 C 0.098 3.902 13 C 0.156 3.844 14 N -0.604 5.604 15 C -0.223 4.223 16 H 0.080 0.920 17 C -0.006 4.006 18 N -0.916 5.916 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.112 3.888 24 C 0.095 3.905 25 C -0.123 4.123 26 C -0.141 4.141 27 C -0.113 4.113 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.404 0.596 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.254 0.746 38 H 0.041 0.959 39 H 0.039 0.961 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.293 -15.260 -20.241 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.115 4.115 3 C 0.319 3.681 4 O -0.414 6.414 5 N -0.370 5.370 6 C 0.027 3.973 7 H 0.134 0.866 8 C -0.209 4.209 9 C 0.298 3.702 10 O -0.384 6.384 11 N -0.345 5.345 12 C -0.005 4.005 13 C 0.030 3.970 14 N -0.331 5.331 15 C -0.351 4.351 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.562 5.562 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.206 1.206 23 C -0.015 4.015 24 C -0.030 4.030 25 C -0.160 4.160 26 C -0.178 4.178 27 C -0.151 4.151 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.239 0.761 32 H 0.118 0.882 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.473 -14.821 -19.872 24.834 hybrid contribution -0.514 0.188 1.352 1.459 sum -1.987 -14.632 -18.520 23.686 Atomic orbital electron populations 1.21601 0.91146 1.03067 1.02674 1.22186 0.97197 0.91302 1.00819 1.20440 0.81708 0.86133 0.79821 1.90687 1.31965 1.79821 1.38971 1.46055 1.43185 1.11751 1.36010 1.21863 0.92838 0.82073 1.00568 0.86588 1.22825 0.98768 1.04497 0.94765 1.20681 0.81520 0.77826 0.90130 1.90792 1.64832 1.55374 1.27359 1.48531 1.17549 1.61144 1.07227 1.24075 0.93948 0.97301 0.85173 1.22738 0.95014 0.96904 0.82366 1.45680 1.54820 1.17617 1.14966 1.18974 1.18180 1.08408 0.89514 0.90176 1.24844 0.99146 0.97946 0.98373 1.69846 1.35546 1.14937 1.35915 0.86119 0.77847 0.77175 0.84748 1.21588 1.21701 1.20553 1.22908 0.97818 0.92433 0.88391 1.22349 0.99094 0.99184 0.82328 1.22970 1.01576 0.95106 0.96392 1.22861 1.02469 0.96343 0.96168 1.22870 1.02208 0.94051 0.95957 0.91634 0.91148 0.91799 0.76082 0.88250 0.87146 0.87725 0.92402 0.91631 0.93615 0.94106 0.94373 0.89913 0.89687 0.89605 0.90395 0.89877 0.90976 0.90989 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.73 8.98 37.16 0.33 -0.40 16 2 C -0.11 -0.85 1.25 -154.84 -0.19 -1.05 16 3 C 0.53 5.38 6.91 -10.98 -0.08 5.30 16 4 O -0.54 -7.24 15.55 5.56 0.09 -7.15 16 5 N -0.72 -6.41 5.01 -52.22 -0.26 -6.67 16 6 C 0.13 1.26 3.53 -66.30 -0.23 1.03 16 7 H 0.12 1.06 7.54 -51.93 -0.39 0.66 16 8 C -0.17 -2.00 6.59 -26.74 -0.18 -2.18 16 9 C 0.51 8.55 7.42 -10.86 -0.08 8.47 16 10 O -0.51 -11.32 14.61 5.56 0.08 -11.24 16 11 N -0.61 -9.03 3.15 -166.63 -0.53 -9.55 16 12 C 0.10 1.81 4.81 -70.14 -0.34 1.47 16 13 C 0.16 3.86 6.81 -2.83 -0.02 3.85 16 14 N -0.60 -16.17 3.70 -177.87 -0.66 -16.82 16 15 C -0.22 -6.47 10.70 -15.06 -0.16 -6.63 16 16 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 18 N -0.92 -28.13 11.51 55.49 0.64 -27.49 16 19 Si 0.91 22.67 29.56 -169.99 -5.02 17.65 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.11 2.37 8.44 -2.97 -0.03 2.35 16 24 C 0.09 0.92 6.97 -3.12 -0.02 0.90 16 25 C -0.12 -0.89 7.21 -25.82 -0.19 -1.07 16 26 C -0.14 -0.87 7.74 -25.82 -0.20 -1.07 16 27 C -0.11 -0.85 6.99 -25.92 -0.18 -1.03 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.33 7.34 -51.93 -0.38 -0.05 16 30 H 0.06 0.33 7.11 -51.93 -0.37 -0.04 16 31 H 0.40 3.17 7.65 -40.82 -0.31 2.86 16 32 H 0.10 1.24 8.09 -51.93 -0.42 0.82 16 33 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 35 H 0.06 1.60 5.71 -51.93 -0.30 1.30 16 36 H 0.07 1.76 7.37 -51.93 -0.38 1.38 16 37 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.04 0.87 7.27 -51.92 -0.38 0.49 16 40 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 43 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 44 H 0.08 0.42 7.64 -51.93 -0.40 0.02 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 47 H 0.09 0.87 7.45 -51.93 -0.39 0.48 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -36.49 374.79 -9.15 -45.63 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.48 Total: 0.35 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -1.65 Total: 9.65 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.81 Total: -60.54 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.17 Total: -18.40 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.49 -9.15 -45.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094773460.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.791 kcal (2) G-P(sol) polarization free energy of solvation -36.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds