Wall clock time and date at job start Fri Apr 10 2020 18:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 112.85123 * 2 1 4 4 O 1.21278 * 119.99838 * 230.32960 * 3 2 1 5 5 N 1.34780 * 119.99638 * 50.32874 * 3 2 1 6 6 C 1.46497 * 119.99524 * 180.02562 * 5 3 2 7 7 H 1.09000 * 110.85934 * 31.21210 * 6 5 3 8 8 C 1.54632 * 110.97080 * 267.37819 * 6 5 3 9 9 C 1.51282 * 104.19804 * 266.68352 * 8 6 5 10 10 O 1.21281 * 124.94611 * 163.76622 * 9 8 6 11 11 N 1.34417 * 110.11559 * 343.74867 * 9 8 6 12 12 C 1.46498 * 124.35328 * 179.85923 * 11 9 8 13 13 C 1.53954 * 113.73933 * 38.43753 * 12 11 9 14 14 N 1.47813 * 86.03377 * 222.08703 * 13 12 11 15 15 C 1.36936 * 134.45115 * 204.64543 * 14 13 12 16 16 H 1.08005 * 119.99712 * 173.34727 * 15 14 13 17 17 C 1.38810 * 120.00644 * 353.34638 * 15 14 13 18 18 N 1.31625 * 119.99626 * 5.06367 * 17 15 14 19 19 Si 1.86794 * 120.00424 * 185.06472 * 17 15 14 20 20 H 1.48507 * 109.46955 * 94.98873 * 19 17 15 21 21 H 1.48496 * 109.47157 * 214.98511 * 19 17 15 22 22 H 1.48495 * 109.47093 * 334.98877 * 19 17 15 23 23 C 1.47569 * 91.05331 * 24.54839 * 14 13 12 24 24 C 1.46766 * 111.30023 * 359.58948 * 11 9 8 25 25 C 1.53785 * 113.61300 * 131.19473 * 2 1 3 26 26 C 1.53958 * 87.01845 * 89.23378 * 25 2 1 27 27 C 1.53780 * 113.61668 * 228.80542 * 2 1 3 28 28 H 1.09000 * 109.46729 * 69.66833 * 1 2 3 29 29 H 1.09004 * 109.47047 * 189.66418 * 1 2 3 30 30 H 1.08998 * 109.47338 * 309.67152 * 1 2 3 31 31 H 0.96998 * 119.99897 * 0.02562 * 5 3 2 32 32 H 1.09004 * 110.48417 * 25.36302 * 8 6 5 33 33 H 1.09000 * 110.48804 * 147.87355 * 8 6 5 34 34 H 1.09005 * 112.94713 * 170.02694 * 12 11 9 35 35 H 1.09001 * 113.76949 * 336.35167 * 13 12 11 36 36 H 1.09004 * 113.76690 * 107.74944 * 13 12 11 37 37 H 0.96998 * 120.00208 * 180.02562 * 18 17 15 38 38 H 1.09000 * 113.77398 * 221.14895 * 23 14 13 39 39 H 1.09009 * 113.77461 * 89.75268 * 23 14 13 40 40 H 1.09004 * 110.24469 * 136.01833 * 24 11 9 41 41 H 1.09004 * 110.25027 * 258.01978 * 24 11 9 42 42 H 1.09000 * 113.61406 * 203.74753 * 25 2 1 43 43 H 1.08990 * 113.61456 * 334.65415 * 25 2 1 44 44 H 1.09001 * 113.53366 * 270.80848 * 26 25 2 45 45 H 1.08995 * 113.74250 * 139.94729 * 26 25 2 46 46 H 1.08996 * 113.61695 * 25.34602 * 27 2 1 47 47 H 1.09002 * 113.61660 * 156.25896 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3888 0.0000 4 8 2.9686 1.6872 -0.8085 5 7 1.6902 2.2991 0.8985 6 6 2.2587 3.6492 0.8981 7 1 2.5471 3.9486 -0.1095 8 6 3.4582 3.7449 1.8693 9 6 2.8483 4.2322 3.1652 10 8 3.3865 4.1760 4.2506 11 7 1.6232 4.7368 2.9386 12 6 0.7531 5.2930 3.9777 13 6 1.5059 6.1050 5.0473 14 7 0.6297 5.4311 6.0286 15 6 0.1877 5.7364 7.2881 16 1 -0.5501 5.1104 7.7680 17 6 0.6877 6.8504 7.9482 18 7 1.5108 7.6687 7.3274 19 14 0.1927 7.1883 9.7174 20 1 1.2166 6.6253 10.6340 21 1 0.0894 8.6541 9.9312 22 1 -1.1213 6.5539 9.9935 23 6 0.4207 4.2990 5.1053 24 6 1.2718 4.6648 1.5155 25 6 2.1460 -0.9281 1.0603 26 6 2.0951 -2.0420 -0.0013 27 6 2.1461 -0.9280 -1.0602 28 1 -0.3633 0.3571 -0.9637 29 1 -0.3633 -1.0131 0.1725 30 1 -0.3634 0.6560 0.7910 31 1 1.0080 2.0602 1.5453 32 1 3.9161 2.7655 2.0077 33 1 4.1930 4.4597 1.4988 34 1 -0.1198 5.8045 3.5721 35 1 2.5584 5.8377 5.1418 36 1 1.3435 7.1806 4.9774 37 1 1.8606 8.4470 7.7888 38 1 -0.6065 3.9352 5.0816 39 1 1.1538 3.4999 5.2168 40 1 0.2466 4.3140 1.3974 41 1 1.3934 5.6415 1.0470 42 1 3.1585 -0.6477 1.3507 43 1 1.4939 -1.1079 1.9149 44 1 1.1595 -2.6014 -0.0006 45 1 2.9738 -2.6869 -0.0031 46 1 1.4940 -1.1079 -1.9149 47 1 3.1586 -0.6477 -1.3505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094773460.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:12 Heat of formation + Delta-G solvation = -10.874749 kcal Electronic energy + Delta-G solvation = -27850.348533 eV Core-core repulsion = 24034.793948 eV Total energy + Delta-G solvation = -3815.554585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.05279 -41.27693 -39.19696 -38.60462 -37.50224 -35.13761 -34.14153 -31.93797 -30.29048 -29.17154 -28.37850 -26.61749 -26.58109 -25.83308 -25.19365 -22.99876 -22.12596 -21.79453 -19.80669 -19.57927 -18.79473 -18.14918 -17.94178 -17.69420 -16.91771 -16.43303 -16.22195 -16.17551 -15.73765 -15.51844 -15.33548 -14.96965 -14.62592 -14.47448 -14.20047 -14.07745 -13.66276 -13.45448 -13.38658 -13.25329 -13.17156 -13.13500 -12.84484 -12.75607 -12.69345 -12.48587 -12.17478 -12.08713 -12.01917 -11.86041 -11.52594 -11.40110 -11.19263 -11.07563 -10.63790 -10.57576 -10.11985 -9.56304 -8.93354 -7.95047 -5.28313 1.41950 1.45862 1.54355 1.57274 1.63214 1.97826 2.13969 2.47732 3.23239 3.34226 3.44542 3.47812 3.49317 3.59036 3.78452 3.80292 3.86144 3.91120 4.04069 4.21875 4.25558 4.52404 4.58848 4.61720 4.67372 4.71481 4.77599 4.78747 4.80261 4.86129 4.90637 4.93857 4.96526 5.06735 5.12010 5.18405 5.22275 5.25032 5.32951 5.43699 5.47382 5.55841 5.85110 5.89087 6.26194 6.50804 6.87014 7.21990 7.24886 7.56681 8.52814 9.23110 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.023597 B = 0.002744 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.309816 B =10200.318780 C =10675.278716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.110 4.110 3 C 0.531 3.469 4 O -0.575 6.575 5 N -0.711 5.711 6 C 0.144 3.856 7 H 0.131 0.869 8 C -0.156 4.156 9 C 0.502 3.498 10 O -0.575 6.575 11 N -0.605 5.605 12 C 0.137 3.863 13 C 0.150 3.850 14 N -0.635 5.635 15 C -0.237 4.237 16 H 0.089 0.911 17 C -0.070 4.070 18 N -0.953 5.953 19 Si 0.982 3.018 20 H -0.293 1.293 21 H -0.291 1.291 22 H -0.260 1.260 23 C 0.115 3.885 24 C 0.097 3.903 25 C -0.126 4.126 26 C -0.131 4.131 27 C -0.118 4.118 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.412 0.588 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.139 0.861 35 H 0.021 0.979 36 H 0.036 0.964 37 H 0.248 0.752 38 H 0.072 0.928 39 H 0.022 0.978 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.870 -16.548 -21.838 27.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.113 4.113 3 C 0.319 3.681 4 O -0.454 6.454 5 N -0.362 5.362 6 C 0.038 3.962 7 H 0.149 0.851 8 C -0.197 4.197 9 C 0.291 3.709 10 O -0.454 6.454 11 N -0.338 5.338 12 C 0.033 3.967 13 C 0.023 3.977 14 N -0.362 5.362 15 C -0.365 4.365 16 H 0.106 0.894 17 C -0.263 4.263 18 N -0.602 5.602 19 Si 0.809 3.191 20 H -0.220 1.220 21 H -0.217 1.217 22 H -0.184 1.184 23 C -0.011 4.011 24 C -0.025 4.025 25 C -0.164 4.164 26 C -0.169 4.169 27 C -0.156 4.156 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.248 0.752 32 H 0.111 0.889 33 H 0.143 0.857 34 H 0.156 0.844 35 H 0.039 0.961 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.040 0.960 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.120 0.880 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.105 -16.149 -21.527 27.222 hybrid contribution 0.347 0.530 1.797 1.906 sum -3.758 -15.619 -19.730 25.443 Atomic orbital electron populations 1.21628 0.89182 1.04234 1.03161 1.22279 0.98573 0.89596 1.00819 1.20903 0.81062 0.86998 0.79181 1.90673 1.33609 1.80585 1.40518 1.46035 1.42978 1.11443 1.35794 1.21818 0.91542 0.82447 1.00365 0.85149 1.22780 0.99953 1.04242 0.92751 1.21493 0.81844 0.76965 0.90598 1.90762 1.66484 1.57915 1.30281 1.48467 1.16555 1.59798 1.08989 1.23393 0.93615 0.94664 0.85028 1.22536 0.93699 0.95922 0.85513 1.46112 1.54890 1.20009 1.15179 1.19448 1.18043 1.08180 0.90830 0.89377 1.25769 0.99744 0.98099 1.02668 1.70056 1.37276 1.15415 1.37408 0.85016 0.78090 0.76782 0.79198 1.22038 1.21749 1.18395 1.22993 0.98895 0.91264 0.87972 1.22693 1.00643 1.00678 0.78532 1.22976 1.00809 0.95594 0.97006 1.22860 1.03475 0.95835 0.94681 1.22857 1.01194 0.94829 0.96746 0.91384 0.89773 0.90988 0.75161 0.88856 0.85665 0.84390 0.96086 0.94571 0.94288 0.91005 0.96020 0.86779 0.87215 0.91399 0.89349 0.87992 0.90936 0.90006 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 8.98 71.98 0.65 -0.38 16 2 C -0.11 -1.46 1.25 -52.40 -0.07 -1.52 16 3 C 0.53 9.80 6.91 87.66 0.61 10.41 16 4 O -0.57 -14.88 15.55 -3.02 -0.05 -14.93 16 5 N -0.71 -10.81 5.01 -437.52 -2.19 -13.00 16 6 C 0.14 2.32 3.53 46.05 0.16 2.49 16 7 H 0.13 1.92 7.54 -2.39 -0.02 1.90 16 8 C -0.16 -3.56 6.59 30.59 0.20 -3.36 16 9 C 0.50 16.74 7.42 87.90 0.65 17.40 16 10 O -0.58 -26.85 14.61 -3.03 -0.04 -26.89 16 11 N -0.60 -16.79 3.15 -799.68 -2.52 -19.31 16 12 C 0.14 4.87 4.81 46.75 0.22 5.10 16 13 C 0.15 7.67 6.81 86.44 0.59 8.26 16 14 N -0.64 -34.41 3.70 -716.67 -2.65 -37.07 16 15 C -0.24 -13.85 10.70 84.03 0.90 -12.95 16 16 H 0.09 4.85 7.83 -2.91 -0.02 4.83 16 17 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 18 N -0.95 -60.66 11.51 21.65 0.25 -60.41 16 19 Si 0.98 47.32 29.56 68.60 2.03 49.34 16 20 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 21 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 23 C 0.11 4.77 8.44 86.49 0.73 5.49 16 24 C 0.10 1.48 6.97 86.83 0.61 2.09 16 25 C -0.13 -1.64 7.21 31.18 0.22 -1.41 16 26 C -0.13 -1.38 7.74 31.18 0.24 -1.14 16 27 C -0.12 -1.63 6.99 31.12 0.22 -1.42 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.08 0.49 7.34 -2.38 -0.02 0.47 16 30 H 0.07 0.48 7.11 -2.39 -0.02 0.46 16 31 H 0.41 5.12 7.65 -92.71 -0.71 4.42 16 32 H 0.09 2.29 8.09 -2.38 -0.02 2.27 16 33 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.14 4.10 8.14 -2.38 -0.02 4.08 16 35 H 0.02 1.25 5.71 -2.39 -0.01 1.23 16 36 H 0.04 2.03 7.37 -2.38 -0.02 2.01 16 37 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.02 0.99 7.27 -2.38 -0.02 0.98 16 40 H 0.11 1.17 8.08 -2.39 -0.02 1.15 16 41 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 43 H 0.09 0.96 8.10 -2.39 -0.02 0.94 16 44 H 0.10 0.71 7.64 -2.39 -0.02 0.70 16 45 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.08 0.94 8.10 -2.39 -0.02 0.92 16 47 H 0.07 1.32 7.45 -2.39 -0.02 1.31 16 Total: -1.00 -85.06 374.79 1.49 -83.57 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.27 Total: 13.35 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: 6.40 Total: 25.35 kcal Atomic # 7 Polarization: -122.67 SS G_CDS: -7.12 Total: -129.79 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -0.09 Total: -41.83 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.34 kcal Total: -85.06 1.49 -83.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094773460.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.696 kcal (2) G-P(sol) polarization free energy of solvation -85.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds