Wall clock time and date at job start Fri Apr 10 2020 18:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.70055 * 2 1 4 4 O 1.21274 * 120.00196 * 120.52094 * 3 2 1 5 5 N 1.34781 * 119.99628 * 300.51318 * 3 2 1 6 6 C 1.46502 * 119.99873 * 180.02562 * 5 3 2 7 7 H 1.09004 * 110.55266 * 32.98376 * 6 5 3 8 8 C 1.54841 * 110.62460 * 155.88167 * 6 5 3 9 9 C 1.55854 * 103.44402 * 118.49147 * 8 6 5 10 10 H 1.09002 * 115.55779 * 158.80747 * 9 8 6 11 11 C 1.55840 * 105.06381 * 288.17348 * 9 8 6 12 12 C 1.54856 * 103.44513 * 71.82363 * 11 9 8 13 13 C 1.55840 * 110.62728 * 269.91331 * 6 5 3 14 14 H 1.09000 * 115.56685 * 82.69520 * 13 6 5 15 15 N 1.50233 * 101.04892 * 208.57325 * 13 6 5 16 16 C 1.36940 * 130.84016 * 233.93038 * 15 13 6 17 17 H 1.08006 * 119.99734 * 0.02562 * 16 15 13 18 18 C 1.38810 * 120.00292 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00214 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99968 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47364 * 59.99925 * 20 18 16 22 22 H 1.48497 * 109.47320 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47230 * 300.00169 * 20 18 16 24 24 C 1.53345 * 109.67337 * 120.51297 * 2 1 3 25 25 C 1.52921 * 108.67534 * 52.20655 * 24 2 1 26 26 N 1.45757 * 110.48829 * 50.74841 * 25 24 2 27 27 C 1.33351 * 124.10708 * 341.20970 * 26 25 24 28 28 O 1.21277 * 118.24706 * 181.94108 * 27 26 25 29 29 C 1.50165 * 123.52084 * 1.66440 * 27 26 25 30 30 H 1.09003 * 109.46960 * 299.48674 * 1 2 3 31 31 H 1.08994 * 109.47265 * 59.48531 * 1 2 3 32 32 H 1.08997 * 109.47273 * 179.48898 * 1 2 3 33 33 H 0.97003 * 119.99855 * 0.02562 * 5 3 2 34 34 H 1.09003 * 110.62809 * 236.97950 * 8 6 5 35 35 H 1.08999 * 110.63316 * 0.02562 * 8 6 5 36 36 H 1.08995 * 110.62841 * 190.31096 * 11 9 8 37 37 H 1.09001 * 110.62745 * 313.33384 * 11 9 8 38 38 H 1.09006 * 110.62751 * 241.51346 * 12 11 9 39 39 H 1.08995 * 110.76440 * 118.55214 * 12 11 9 40 40 H 0.96993 * 120.00392 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.60458 * 292.44417 * 24 2 1 42 42 H 1.09008 * 109.60418 * 171.95911 * 24 2 1 43 43 H 1.09000 * 109.29449 * 290.43814 * 25 24 2 44 44 H 1.08993 * 109.13458 * 170.95758 * 25 24 2 45 45 H 0.96996 * 117.94144 * 160.92763 * 26 25 24 46 46 H 1.09006 * 109.54030 * 222.65268 * 29 27 26 47 47 H 1.08994 * 109.13308 * 102.89936 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0380 1.4188 0.0000 4 8 2.7446 1.8100 0.9047 5 7 1.7072 2.2530 -1.0056 6 6 2.2015 3.6321 -1.0060 7 1 3.1906 3.6843 -0.5508 8 6 2.2332 4.1998 -2.4462 9 6 1.2494 5.4069 -2.3816 10 1 1.3791 6.1613 -3.1577 11 6 -0.1683 4.7687 -2.2748 12 6 -0.2000 4.2009 -0.8344 13 6 1.2031 4.5734 -0.2672 14 1 1.2917 4.5936 0.8190 15 7 1.4613 5.8758 -0.9701 16 6 1.7884 7.1104 -0.4763 17 1 1.8983 7.2544 0.5885 18 6 1.9786 8.1770 -1.3441 19 7 1.8442 8.0018 -2.6416 20 14 2.4255 9.8610 -0.6704 21 1 3.7068 9.7720 0.0749 22 1 2.5715 10.8209 -1.7940 23 1 1.3528 10.3291 0.2436 24 6 2.0462 -0.7331 1.2440 25 6 1.3751 -2.1053 1.3174 26 7 1.5028 -2.8044 0.0449 27 6 1.7861 -2.2053 -1.1123 28 8 1.8321 -2.8861 -2.1149 29 6 2.0454 -0.7319 -1.2417 30 1 -0.3633 0.5059 0.8946 31 1 -0.3633 0.5218 -0.8853 32 1 -0.3633 -1.0276 -0.0092 33 1 1.1418 1.9402 -1.7291 34 1 3.2373 4.5362 -2.7044 35 1 1.8807 3.4555 -3.1603 36 1 -0.9412 5.5260 -2.4060 37 1 -0.2853 3.9686 -3.0056 38 1 -0.3326 3.1191 -0.8510 39 1 -0.9886 4.6744 -0.2497 40 1 1.9775 8.7469 -3.2480 41 1 1.8002 -0.1574 2.1362 42 1 3.1268 -0.8579 1.1728 43 1 0.3188 -1.9773 1.5538 44 1 1.8510 -2.6942 2.1014 45 1 1.3778 -3.7663 0.0402 46 1 1.5359 -0.3483 -2.1257 47 1 3.1179 -0.5653 -1.3411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095609851.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:27 Heat of formation + Delta-G solvation = -29.952660 kcal Electronic energy + Delta-G solvation = -28740.075504 eV Core-core repulsion = 24923.693639 eV Total energy + Delta-G solvation = -3816.381865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24751 -39.84270 -38.57327 -36.73362 -34.35678 -33.73110 -32.30803 -30.02554 -29.34198 -29.04945 -28.20211 -27.53010 -24.95646 -24.23093 -23.11346 -21.36308 -20.48439 -19.55396 -18.69499 -18.59056 -17.79529 -17.02648 -16.77645 -16.38977 -15.80908 -15.47006 -15.07399 -14.95746 -14.79149 -14.41899 -14.01995 -13.89277 -13.64588 -13.33530 -12.95265 -12.46981 -12.41272 -12.23143 -11.99551 -11.77025 -11.74867 -11.51765 -11.28099 -11.16158 -11.06317 -10.93620 -10.91578 -10.84181 -10.37159 -10.25202 -10.13721 -9.87866 -9.52648 -9.41632 -9.38235 -9.24000 -8.94930 -8.54883 -6.93743 -5.74495 -3.12750 2.36100 2.72543 2.96990 3.28701 3.39609 3.43660 3.44688 4.14845 4.26101 4.36564 4.43831 4.45666 4.77928 4.83389 4.98559 5.11540 5.17996 5.26961 5.31342 5.36086 5.43862 5.52745 5.55389 5.65554 5.77859 5.79443 5.81809 5.91514 5.94481 6.03649 6.09615 6.27654 6.29856 6.43408 6.51033 6.56927 6.64684 6.78081 6.93040 6.96367 6.98717 7.24747 7.49862 7.70021 7.80072 7.91024 8.15041 8.40688 9.08467 9.71225 10.51189 11.35003 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.028404 B = 0.003096 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.542420 B = 9042.555167 C = 9345.165034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C 0.520 3.480 4 O -0.538 6.538 5 N -0.707 5.707 6 C 0.126 3.874 7 H 0.084 0.916 8 C -0.142 4.142 9 C 0.154 3.846 10 H 0.155 0.845 11 C -0.137 4.137 12 C -0.130 4.130 13 C 0.129 3.871 14 H 0.084 0.916 15 N -0.590 5.590 16 C -0.212 4.212 17 H 0.078 0.922 18 C -0.011 4.011 19 N -0.924 5.924 20 Si 0.917 3.083 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.286 1.286 24 C -0.113 4.113 25 C 0.108 3.892 26 N -0.720 5.720 27 C 0.527 3.473 28 O -0.557 6.557 29 C -0.125 4.125 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.395 0.605 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.255 0.745 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.399 0.601 46 H 0.107 0.893 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.696 -19.481 4.683 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.086 4.086 3 C 0.305 3.695 4 O -0.415 6.415 5 N -0.357 5.357 6 C 0.020 3.980 7 H 0.102 0.898 8 C -0.182 4.182 9 C 0.047 3.953 10 H 0.171 0.829 11 C -0.176 4.176 12 C -0.170 4.170 13 C 0.020 3.980 14 H 0.102 0.898 15 N -0.310 5.310 16 C -0.340 4.340 17 H 0.096 0.904 18 C -0.207 4.207 19 N -0.572 5.572 20 Si 0.747 3.253 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.213 1.213 24 C -0.151 4.151 25 C -0.016 4.016 26 N -0.372 5.372 27 C 0.314 3.686 28 O -0.436 6.436 29 C -0.165 4.165 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.229 0.771 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.234 0.766 46 H 0.126 0.874 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.038 -18.906 4.786 19.737 hybrid contribution -0.112 0.336 0.135 0.379 sum -3.150 -18.569 4.921 19.467 Atomic orbital electron populations 1.21976 0.91871 1.02986 1.03551 1.20926 0.97803 0.93401 0.96486 1.20149 0.80542 0.86415 0.82420 1.90707 1.37644 1.77312 1.35809 1.46265 1.51877 1.12749 1.24855 1.22689 0.98686 0.78354 0.98254 0.89799 1.23312 1.02180 0.99289 0.93403 1.23772 0.88808 0.92274 0.90448 0.82863 1.23041 1.01115 0.98589 0.94885 1.22910 0.98443 0.98142 0.97466 1.23174 0.92659 0.86633 0.95536 0.89775 1.46470 1.79408 1.03524 1.01609 1.19011 1.39119 0.83817 0.92016 0.90378 1.24693 1.02530 0.98086 0.95343 1.69418 1.56207 1.30471 1.01069 0.86109 0.78304 0.83383 0.77459 1.21195 1.21573 1.21261 1.21749 1.01257 0.93971 0.98112 1.21494 1.01343 0.93750 0.85036 1.45486 1.71982 1.11793 1.07954 1.19972 0.75437 0.90488 0.82682 1.90777 1.52212 1.65135 1.35441 1.21746 1.04631 0.91156 0.98934 0.91094 0.91505 0.91331 0.77063 0.91608 0.92719 0.92641 0.93641 0.93119 0.93084 0.93485 0.88498 0.90211 0.91000 0.90160 0.76568 0.87440 0.87607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 7.71 37.16 0.29 -0.86 16 2 C -0.08 -0.77 0.63 -155.44 -0.10 -0.86 16 3 C 0.52 6.92 6.47 -10.98 -0.07 6.85 16 4 O -0.54 -9.30 15.56 5.56 0.09 -9.22 16 5 N -0.71 -9.50 3.52 -51.40 -0.18 -9.68 16 6 C 0.13 2.24 3.14 -65.44 -0.21 2.03 16 7 H 0.08 1.70 7.58 -51.93 -0.39 1.31 16 8 C -0.14 -2.61 6.20 -24.24 -0.15 -2.76 16 9 C 0.15 3.37 4.72 -62.80 -0.30 3.07 16 10 H 0.15 3.88 5.52 -51.93 -0.29 3.59 16 11 C -0.14 -2.54 6.44 -24.24 -0.16 -2.70 16 12 C -0.13 -2.27 6.32 -24.23 -0.15 -2.42 16 13 C 0.13 2.59 5.35 -62.80 -0.34 2.26 16 14 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 15 N -0.59 -14.34 2.98 -145.81 -0.44 -14.78 16 16 C -0.21 -5.75 10.59 -15.06 -0.16 -5.91 16 17 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 19 N -0.92 -25.87 10.46 55.49 0.58 -25.29 16 20 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 C -0.11 -0.92 4.34 -26.59 -0.12 -1.03 16 25 C 0.11 0.60 6.38 -4.48 -0.03 0.57 16 26 N -0.72 -5.29 5.24 -61.39 -0.32 -5.61 16 27 C 0.53 5.49 7.15 -11.88 -0.08 5.40 16 28 O -0.56 -8.06 17.78 5.56 0.10 -7.96 16 29 C -0.12 -1.17 4.65 -28.10 -0.13 -1.30 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.51 7.54 -51.93 -0.39 0.12 16 32 H 0.07 0.47 5.92 -51.93 -0.31 0.16 16 33 H 0.39 4.42 7.08 -40.82 -0.29 4.13 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.05 0.84 7.38 -51.93 -0.38 0.46 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.04 0.71 7.81 -51.93 -0.41 0.30 16 38 H 0.05 0.73 6.39 -51.93 -0.33 0.40 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.10 0.83 7.90 -51.93 -0.41 0.42 16 42 H 0.08 0.72 8.12 -51.92 -0.42 0.30 16 43 H 0.07 0.33 6.87 -51.93 -0.36 -0.03 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.40 2.48 8.80 -40.82 -0.36 2.12 16 46 H 0.11 0.93 7.94 -51.93 -0.41 0.52 16 47 H 0.11 1.03 8.09 -51.93 -0.42 0.61 16 LS Contribution 359.96 15.07 5.42 5.42 Total: -1.00 -32.66 359.96 -8.82 -41.48 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.25 Total: 6.93 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -1.79 Total: 1.94 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.36 Total: -55.36 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.19 Total: -17.18 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.66 -8.82 -41.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095609851.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.524 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds