Wall clock time and date at job start Fri Apr 10 2020 18:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34489 * 126.83463 * 2 1 4 4 N 1.36448 * 108.85833 * 179.90052 * 3 2 1 5 5 H 0.96997 * 124.85166 * 180.12999 * 4 3 2 6 6 C 1.34653 * 110.29521 * 0.39147 * 4 3 2 7 7 C 1.36763 * 108.40080 * 359.76399 * 6 4 3 8 8 C 1.47261 * 126.94415 * 180.02562 * 7 6 4 9 9 O 1.21630 * 120.00159 * 134.67769 * 8 7 6 10 10 N 1.34776 * 120.00353 * 314.67733 * 8 7 6 11 11 C 1.46930 * 120.62749 * 3.64742 * 10 8 7 12 12 C 1.52761 * 109.00633 * 233.58449 * 11 10 8 13 13 C 1.53047 * 109.38161 * 305.58747 * 12 11 10 14 14 N 1.46497 * 109.45838 * 181.26405 * 13 12 11 15 15 C 1.36940 * 120.00074 * 299.92624 * 14 13 12 16 16 H 1.07999 * 119.99851 * 320.87414 * 15 14 13 17 17 C 1.38809 * 119.99624 * 140.86934 * 15 14 13 18 18 N 1.31618 * 120.00700 * 339.60739 * 17 15 14 19 19 Si 1.86804 * 119.99829 * 159.61138 * 17 15 14 20 20 H 1.48509 * 109.46998 * 59.99695 * 19 17 15 21 21 H 1.48499 * 109.47315 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47067 * 300.00209 * 19 17 15 23 23 C 1.46508 * 120.00111 * 119.93266 * 14 13 12 24 24 C 1.52993 * 109.47162 * 84.40215 * 23 14 13 25 25 O 1.42901 * 109.46991 * 65.00400 * 24 23 14 26 26 C 1.53039 * 109.53890 * 61.23930 * 13 12 11 27 27 C 1.46923 * 120.63596 * 183.92326 * 10 8 7 28 28 H 1.09003 * 109.46923 * 269.67799 * 1 2 3 29 29 H 1.09000 * 109.47462 * 149.67909 * 1 2 3 30 30 H 1.08999 * 109.47637 * 29.67424 * 1 2 3 31 31 H 1.07997 * 125.56846 * 0.02562 * 3 2 1 32 32 H 1.08003 * 125.79985 * 179.73733 * 6 4 3 33 33 H 1.09003 * 109.58415 * 353.41483 * 11 10 8 34 34 H 1.08997 * 109.58576 * 113.84038 * 11 10 8 35 35 H 1.08994 * 109.56330 * 185.55529 * 12 11 10 36 36 H 1.09002 * 109.36053 * 65.49556 * 12 11 10 37 37 H 1.09004 * 109.45771 * 301.21870 * 13 12 11 38 38 H 0.96990 * 120.00452 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.46841 * 204.40871 * 23 14 13 40 40 H 1.09002 * 109.46749 * 324.40046 * 23 14 13 41 41 H 1.09000 * 109.47201 * 184.99794 * 24 23 14 42 42 H 1.09004 * 109.47640 * 305.00101 * 24 23 14 43 43 H 0.96708 * 113.99895 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.49554 * 178.68362 * 26 13 12 45 45 H 1.09000 * 109.52020 * 58.60619 * 26 13 12 46 46 H 1.08997 * 109.59268 * 246.16129 * 27 10 8 47 47 H 1.09008 * 109.58478 * 6.44306 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 0.0022 5 1 4.3840 1.2414 0.0045 6 6 3.6656 -0.6901 -0.0049 7 6 2.3864 -1.1740 -0.0067 8 6 1.9750 -2.5879 -0.0134 9 8 1.0943 -2.9686 0.7342 10 7 2.5743 -3.4603 -0.8479 11 6 3.6931 -3.0336 -1.6993 12 6 3.3789 -3.3927 -3.1505 13 6 3.0500 -4.8844 -3.2448 14 7 2.7780 -5.2369 -4.6405 15 6 1.7508 -4.6296 -5.3123 16 1 0.8187 -4.4278 -4.8054 17 6 1.9076 -4.2735 -6.6448 18 7 3.1144 -4.1378 -7.1522 19 14 0.4057 -3.9867 -7.7179 20 1 -0.4086 -2.8846 -7.1453 21 1 0.8402 -3.6194 -9.0896 22 1 -0.4086 -5.2274 -7.7715 23 6 3.6047 -6.2392 -5.3175 24 6 3.0724 -7.6380 -5.0002 25 8 1.7650 -7.7878 -5.5572 26 6 1.8173 -5.1917 -2.3916 27 6 2.1174 -4.8544 -0.9278 28 1 -0.3633 -0.0058 1.0277 29 1 -0.3634 -0.8871 -0.5188 30 1 -0.3634 0.8929 -0.5087 31 1 1.9867 2.1058 0.0004 32 1 4.5664 -1.2859 -0.0090 33 1 3.8281 -1.9555 -1.6122 34 1 4.6044 -3.5444 -1.3884 35 1 4.2429 -3.1704 -3.7768 36 1 2.5231 -2.8093 -3.4900 37 1 3.8971 -5.4667 -2.8820 38 1 3.2240 -3.8886 -8.0831 39 1 3.5692 -6.0724 -6.3940 40 1 4.6346 -6.1550 -4.9706 41 1 3.7383 -8.3863 -5.4301 42 1 3.0246 -7.7722 -3.9196 43 1 1.3647 -8.6529 -5.3941 44 1 1.5697 -6.2498 -2.4778 45 1 0.9758 -4.5918 -2.7382 46 1 2.8975 -5.5168 -0.5527 47 1 1.2144 -4.9779 -0.3297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098561229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:37 Heat of formation + Delta-G solvation = -10.797022 kcal Electronic energy + Delta-G solvation = -28489.824045 eV Core-core repulsion = 24674.272830 eV Total energy + Delta-G solvation = -3815.551215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.24383 -39.30179 -37.32894 -36.05139 -34.51292 -32.45522 -32.05451 -31.00655 -30.29391 -29.28558 -27.59955 -26.53120 -24.97015 -23.56240 -22.64994 -21.97247 -20.39620 -20.05679 -19.44164 -18.54428 -17.75644 -16.63917 -16.47373 -15.95418 -15.29284 -14.96363 -14.77494 -14.38543 -14.12659 -13.87314 -13.71608 -13.55606 -13.31795 -13.07940 -12.92163 -12.72236 -12.62256 -12.43460 -12.20264 -12.00681 -11.73378 -11.42832 -11.31423 -11.11658 -10.88100 -10.64153 -10.59302 -10.45567 -9.97861 -9.84499 -9.80523 -9.55114 -9.39342 -9.05642 -8.56005 -8.31258 -8.23247 -8.15405 -6.43301 -5.67498 -3.22006 1.98232 2.46381 3.14569 3.27187 3.48159 3.51914 3.58909 3.67586 4.60646 4.85377 4.92816 5.07429 5.21145 5.32903 5.35105 5.38551 5.47154 5.53958 5.62973 5.70449 5.83693 5.86396 5.89836 5.93304 6.04628 6.08328 6.11603 6.16341 6.25039 6.26334 6.37764 6.47101 6.55664 6.70760 6.75513 6.83460 6.84432 6.92307 7.00898 7.20506 7.29466 7.41723 7.66953 7.83267 7.96757 8.49903 8.59943 8.69512 9.31404 9.94328 10.51252 11.35642 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.014109 B = 0.004005 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.139952 B = 6990.380882 C = 7719.093053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.117 4.117 3 C -0.024 4.024 4 N -0.553 5.553 5 H 0.416 0.584 6 C 0.037 3.963 7 C -0.212 4.212 8 C 0.589 3.411 9 O -0.552 6.552 10 N -0.600 5.600 11 C 0.098 3.902 12 C -0.133 4.133 13 C 0.178 3.822 14 N -0.571 5.571 15 C -0.232 4.232 16 H 0.054 0.946 17 C 0.017 3.983 18 N -0.896 5.896 19 Si 0.893 3.107 20 H -0.285 1.285 21 H -0.294 1.294 22 H -0.282 1.282 23 C 0.149 3.851 24 C 0.058 3.942 25 O -0.544 6.544 26 C -0.138 4.138 27 C 0.116 3.884 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.167 0.833 32 H 0.173 0.827 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.251 0.749 39 H 0.098 0.902 40 H 0.035 0.965 41 H 0.018 0.982 42 H 0.022 0.978 43 H 0.349 0.651 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.738 5.375 13.010 14.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.123 4.123 3 C -0.152 4.152 4 N -0.147 5.147 5 H 0.252 0.748 6 C -0.098 4.098 7 C -0.222 4.222 8 C 0.378 3.622 9 O -0.431 6.431 10 N -0.332 5.332 11 C -0.025 4.025 12 C -0.173 4.173 13 C 0.071 3.929 14 N -0.290 5.290 15 C -0.362 4.362 16 H 0.071 0.929 17 C -0.182 4.182 18 N -0.539 5.539 19 Si 0.724 3.276 20 H -0.211 1.211 21 H -0.220 1.220 22 H -0.208 1.208 23 C 0.022 3.978 24 C -0.022 4.022 25 O -0.345 6.345 26 C -0.178 4.178 27 C -0.007 4.007 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.184 0.816 32 H 0.190 0.810 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.115 0.885 40 H 0.054 0.946 41 H 0.037 0.963 42 H 0.041 0.959 43 H 0.192 0.808 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.557 5.945 13.009 15.012 hybrid contribution -0.303 -0.279 -0.609 0.735 sum 4.254 5.666 12.401 14.282 Atomic orbital electron populations 1.20104 0.89578 1.02113 1.01808 1.20479 0.95422 0.90392 1.06048 1.21499 0.82507 0.99022 1.12140 1.41439 1.08151 1.06619 1.58526 0.74809 1.21882 0.98392 0.83640 1.05926 1.20333 0.92922 0.92926 1.16048 1.17474 0.81009 0.84171 0.79500 1.90724 1.32121 1.79178 1.41086 1.48007 1.34461 1.10670 1.40087 1.22048 0.87941 1.00615 0.91884 1.22193 1.02844 0.99693 0.92520 1.20314 0.93514 0.92550 0.86570 1.43680 1.35945 1.42194 1.07209 1.18693 0.91332 1.32735 0.93472 0.92858 1.25064 0.95598 0.98356 0.99200 1.69981 1.20362 1.49798 1.13775 0.86528 0.83461 0.78066 0.79584 1.21106 1.22000 1.20815 1.20932 0.90757 0.84186 1.01940 1.23117 0.83831 1.00352 0.94934 1.86856 1.31691 1.36570 1.79398 1.22345 1.01431 1.01345 0.92703 1.21635 1.00002 0.80705 0.98332 0.91683 0.91562 0.92175 0.81577 0.81022 0.89681 0.92324 0.91156 0.91020 0.93752 0.93886 0.88455 0.94639 0.96346 0.95933 0.80787 0.91668 0.91347 0.92385 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.35 36.00 0.37 -0.66 16 2 C -0.12 -1.61 6.36 -102.54 -0.65 -2.26 16 3 C -0.02 -0.25 11.82 -16.82 -0.20 -0.45 16 4 N -0.55 -4.90 5.90 -12.85 -0.08 -4.98 16 5 H 0.42 2.11 8.96 -40.82 -0.37 1.74 16 6 C 0.04 0.41 9.50 -16.85 -0.16 0.25 16 7 C -0.21 -3.16 5.45 -103.35 -0.56 -3.72 16 8 C 0.59 10.33 7.54 -12.59 -0.09 10.23 16 9 O -0.55 -11.30 16.53 5.25 0.09 -11.21 16 10 N -0.60 -9.79 2.98 -174.36 -0.52 -10.31 16 11 C 0.10 1.45 5.73 -3.93 -0.02 1.42 16 12 C -0.13 -2.49 5.29 -26.83 -0.14 -2.63 16 13 C 0.18 3.51 2.60 -67.89 -0.18 3.33 16 14 N -0.57 -13.50 2.31 -165.61 -0.38 -13.88 16 15 C -0.23 -6.24 8.00 -15.06 -0.12 -6.36 16 16 H 0.05 1.50 6.91 -52.49 -0.36 1.13 16 17 C 0.02 0.47 4.91 -17.43 -0.09 0.39 16 18 N -0.90 -25.58 11.61 55.49 0.64 -24.94 16 19 Si 0.89 22.46 29.60 -169.99 -5.03 17.43 16 20 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 23 C 0.15 3.38 5.56 -4.04 -0.02 3.36 16 24 C 0.06 1.12 7.39 37.15 0.27 1.40 16 25 O -0.54 -11.39 13.40 -35.23 -0.47 -11.86 16 26 C -0.14 -2.57 5.30 -26.61 -0.14 -2.71 16 27 C 0.12 1.89 6.42 -3.72 -0.02 1.87 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.17 1.48 7.23 -52.48 -0.38 1.10 16 33 H 0.09 1.14 4.32 -51.93 -0.22 0.91 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 36 H 0.07 1.58 7.71 -51.93 -0.40 1.18 16 37 H 0.04 0.82 7.87 -51.93 -0.41 0.41 16 38 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.10 2.59 5.68 -51.93 -0.30 2.29 16 40 H 0.04 0.75 8.04 -51.93 -0.42 0.33 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.35 5.34 9.12 45.56 0.42 5.75 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.07 1.46 7.07 -51.93 -0.37 1.10 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.08 1.43 7.02 -51.92 -0.36 1.07 16 LS Contribution 375.44 15.07 5.66 5.66 Total: -1.00 -34.67 375.44 -8.38 -43.05 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.53 Total: 7.58 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -1.76 Total: 3.46 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.33 Total: -54.11 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.39 Total: -23.07 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.67 -8.38 -43.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098561229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.252 kcal (2) G-P(sol) polarization free energy of solvation -34.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds