Wall clock time and date at job start Fri Apr 10 2020 18:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35447 * 125.56448 * 2 1 4 4 C 1.39837 * 107.86502 * 180.02562 * 3 2 1 5 5 C 1.37870 * 107.08149 * 359.97438 * 4 3 2 6 6 C 1.46679 * 126.22921 * 179.97438 * 5 4 3 7 7 O 1.21696 * 120.00178 * 174.73865 * 6 5 4 8 8 N 1.34774 * 120.00086 * 354.74811 * 6 5 4 9 9 C 1.46507 * 119.99993 * 184.76966 * 8 6 5 10 10 C 1.53003 * 109.46981 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.55385 * 60.12841 * 10 9 8 12 12 C 1.53294 * 109.51163 * 180.25744 * 10 9 8 13 13 N 1.47227 * 108.40565 * 172.22888 * 12 10 9 14 14 C 1.36931 * 121.03027 * 129.46062 * 13 12 10 15 15 H 1.08001 * 119.99866 * 210.27069 * 14 13 12 16 16 C 1.38821 * 120.00205 * 30.27339 * 14 13 12 17 17 N 1.31610 * 119.99896 * 10.16067 * 16 14 13 18 18 Si 1.86801 * 119.99785 * 190.16396 * 16 14 13 19 19 H 1.48498 * 109.47392 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47332 * 119.99918 * 18 16 14 21 21 H 1.48504 * 109.46831 * 239.99860 * 18 16 14 22 22 C 1.47148 * 117.98755 * 309.48042 * 13 12 10 23 23 C 1.53301 * 108.41196 * 50.52035 * 22 13 12 24 24 O 1.42960 * 109.51077 * 299.99779 * 10 9 8 25 25 N 1.35531 * 125.56148 * 180.35804 * 2 1 3 26 26 C 1.46496 * 125.67971 * 359.97438 * 25 2 1 27 27 H 1.08996 * 109.47050 * 89.97280 * 1 2 3 28 28 H 1.09001 * 109.47461 * 209.97494 * 1 2 3 29 29 H 1.08999 * 109.47063 * 329.97851 * 1 2 3 30 30 H 1.07998 * 126.06610 * 0.06613 * 3 2 1 31 31 H 1.07997 * 126.45700 * 179.97438 * 4 3 2 32 32 H 0.96998 * 120.00275 * 4.76957 * 8 6 5 33 33 H 1.09003 * 109.46589 * 59.99922 * 9 8 6 34 34 H 1.08998 * 109.46751 * 300.00049 * 9 8 6 35 35 H 1.09005 * 109.47013 * 299.86754 * 11 10 9 36 36 H 1.08994 * 109.47631 * 59.87512 * 11 10 9 37 37 H 1.09005 * 109.46630 * 179.87503 * 11 10 9 38 38 H 1.09005 * 109.67922 * 291.94628 * 12 10 9 39 39 H 1.09006 * 109.68553 * 52.49466 * 12 10 9 40 40 H 0.96995 * 120.00040 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.68270 * 290.78303 * 22 13 12 42 42 H 1.08993 * 109.68119 * 170.26012 * 22 13 12 43 43 H 1.08997 * 109.51385 * 67.60884 * 23 22 13 44 44 H 1.09002 * 109.50882 * 187.70807 * 23 22 13 45 45 H 1.09003 * 109.47761 * 273.91076 * 26 25 2 46 46 H 1.09006 * 109.47414 * 33.91527 * 26 25 2 47 47 H 1.09005 * 109.47409 * 153.91435 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6767 -0.0006 5 6 3.6121 -0.7019 -0.0004 6 6 4.7859 -1.5816 -0.0013 7 8 4.6436 -2.7863 0.0956 8 7 6.0221 -1.0556 -0.1094 9 6 7.1868 -1.9379 -0.2156 10 6 8.4580 -1.0934 -0.3252 11 6 8.5991 -0.2164 0.9205 12 6 9.6768 -2.0157 -0.4428 13 7 10.8593 -1.1884 -0.7341 14 6 12.0067 -1.3127 0.0029 15 1 12.6526 -0.4589 0.1446 16 6 12.3396 -2.5363 0.5678 17 7 11.6689 -3.6188 0.2356 18 14 13.7396 -2.6462 1.7997 19 1 14.3290 -1.2981 2.0008 20 1 13.2214 -3.1584 3.0937 21 1 14.7818 -3.5696 1.2835 22 6 10.7711 -0.2232 -1.8413 23 6 9.4989 0.6118 -1.6555 24 8 8.3816 -0.2640 -1.4871 25 7 2.2953 -1.1025 -0.0069 26 6 1.8242 -2.4896 -0.0150 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 1.9545 2.1268 0.0010 31 1 4.5025 1.3091 -0.0011 32 1 6.1406 -0.0929 -0.1169 33 1 7.0885 -2.5641 -1.1024 34 1 7.2460 -2.5697 0.6706 35 1 7.7343 0.4423 1.0010 36 1 8.6573 -0.8494 1.8059 37 1 9.5062 0.3829 0.8420 38 1 9.8249 -2.5498 0.4958 39 1 9.5202 -2.7298 -1.2514 40 1 11.9013 -4.4737 0.6306 41 1 10.7246 -0.7567 -2.7907 42 1 11.6437 0.4298 -1.8294 43 1 9.6032 1.2428 -0.7730 44 1 9.3427 1.2376 -2.5342 45 1 1.6413 -2.8174 1.0083 46 1 0.8995 -2.5560 -0.5885 47 1 2.5811 -3.1278 -0.4710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107735469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:14 Heat of formation + Delta-G solvation = -8.466736 kcal Electronic energy + Delta-G solvation = -27915.115038 eV Core-core repulsion = 24099.664872 eV Total energy + Delta-G solvation = -3815.450166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.52377 -39.47430 -38.46331 -34.98273 -34.33198 -33.04030 -32.10610 -31.40586 -31.24334 -27.95407 -27.48188 -26.59274 -26.17335 -25.02296 -23.21573 -22.10552 -21.19079 -20.20321 -19.33326 -18.67085 -17.76570 -16.94869 -15.96891 -15.93357 -15.62477 -15.18208 -15.02710 -14.47000 -14.37992 -14.06651 -13.96562 -13.61025 -13.44340 -13.39289 -13.28671 -13.07284 -12.92519 -12.76782 -12.51910 -12.10736 -12.08713 -11.97059 -11.83753 -11.57480 -11.18337 -10.98656 -10.85456 -10.64980 -10.29904 -10.22804 -10.05405 -9.84862 -9.52688 -9.02057 -8.86722 -8.82955 -8.56912 -8.10522 -6.68660 -5.84756 -3.33819 1.45499 2.55981 2.61055 3.32479 3.40238 3.42016 3.45974 3.52596 4.26268 4.42366 4.60348 4.67683 4.84526 4.94600 5.08628 5.16679 5.23550 5.32148 5.34322 5.40303 5.47434 5.48520 5.53967 5.59484 5.70741 5.93606 5.95554 5.99017 6.02430 6.06492 6.12117 6.15854 6.32582 6.47545 6.57919 6.66830 6.74426 6.78249 6.84006 6.91551 7.09000 7.11034 7.49202 7.69992 7.70887 7.89624 8.34363 8.36120 9.11388 9.72482 10.31765 11.22897 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.024022 B = 0.002836 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.310498 B = 9871.802365 C =10431.572928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.034 3.966 3 C -0.206 4.206 4 C -0.140 4.140 5 C -0.046 4.046 6 C 0.584 3.416 7 O -0.556 6.556 8 N -0.703 5.703 9 C 0.143 3.857 10 C 0.078 3.922 11 C -0.162 4.162 12 C 0.161 3.839 13 N -0.591 5.591 14 C -0.254 4.254 15 H 0.067 0.933 16 C 0.005 3.995 17 N -0.903 5.903 18 Si 0.905 3.095 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.289 1.289 22 C 0.109 3.891 23 C 0.046 3.954 24 O -0.384 6.384 25 N -0.408 5.408 26 C 0.065 3.935 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.405 0.595 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.030 0.970 40 H 0.255 0.745 41 H 0.025 0.975 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.695 8.613 -0.424 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 C -0.230 4.230 4 C -0.166 4.166 5 C -0.159 4.159 6 C 0.371 3.629 7 O -0.437 6.437 8 N -0.354 5.354 9 C 0.019 3.981 10 C 0.036 3.964 11 C -0.220 4.220 12 C 0.035 3.965 13 N -0.314 5.314 14 C -0.383 4.383 15 H 0.085 0.915 16 C -0.194 4.194 17 N -0.547 5.547 18 Si 0.735 3.265 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.216 1.216 22 C -0.017 4.017 23 C -0.032 4.032 24 O -0.303 6.303 25 N -0.082 5.082 26 C -0.077 4.077 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.158 0.842 31 H 0.161 0.839 32 H 0.240 0.760 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -19.955 7.173 -0.444 21.209 hybrid contribution 1.092 0.316 0.744 1.359 sum -18.862 7.489 0.300 20.297 Atomic orbital electron populations 1.20359 0.87908 1.03337 1.02726 1.20533 0.93698 0.85927 1.08073 1.20583 0.92474 0.97649 1.12264 1.21341 0.97869 0.92029 1.05348 1.20091 0.84306 0.93636 1.17914 1.16983 0.82407 0.86759 0.76723 1.90767 1.86342 1.14959 1.51611 1.45628 1.05198 1.11107 1.73428 1.21396 0.81925 0.92029 1.02735 1.22575 0.95986 0.92332 0.85470 1.22208 1.01554 1.00293 0.97896 1.21304 0.82459 0.90485 1.02285 1.43964 1.10671 1.43451 1.33347 1.19184 0.99609 0.93734 1.25775 0.91538 1.25178 0.98318 0.95135 1.00722 1.69956 1.42153 0.98292 1.44318 0.86185 0.81851 0.77654 0.80850 1.20234 1.21490 1.21574 1.21610 0.95527 0.92785 0.91825 1.23037 0.87951 0.92146 1.00066 1.87817 1.43219 1.54330 1.44968 1.43739 1.04656 1.06537 1.53219 1.22254 1.01848 0.79944 1.03609 0.90880 0.91717 0.89922 0.84169 0.83858 0.75965 0.90779 0.89874 0.93898 0.91859 0.90808 0.88535 0.95240 0.93443 0.95662 0.92069 0.93388 0.90180 0.90711 0.90302 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 9.88 36.01 0.36 -0.20 16 2 C 0.03 0.36 6.87 -81.95 -0.56 -0.20 16 3 C -0.21 -2.22 10.71 -39.98 -0.43 -2.64 16 4 C -0.14 -1.70 10.35 -39.12 -0.41 -2.10 16 5 C -0.05 -0.65 6.88 -81.98 -0.56 -1.21 16 6 C 0.58 9.41 7.77 -12.85 -0.10 9.31 16 7 O -0.56 -10.35 14.67 5.19 0.08 -10.27 16 8 N -0.70 -10.76 5.14 -61.61 -0.32 -11.07 16 9 C 0.14 2.49 4.82 -4.04 -0.02 2.47 16 10 C 0.08 1.44 0.76 -90.47 -0.07 1.37 16 11 C -0.16 -2.78 7.92 37.16 0.29 -2.49 16 12 C 0.16 3.75 4.06 -3.49 -0.01 3.73 16 13 N -0.59 -14.33 2.56 -171.76 -0.44 -14.77 16 14 C -0.25 -6.71 9.64 -15.06 -0.15 -6.85 16 15 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 16 C 0.01 0.15 5.08 -17.43 -0.09 0.06 16 17 N -0.90 -25.62 11.03 55.49 0.61 -25.01 16 18 Si 0.90 21.24 29.57 -169.99 -5.03 16.21 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 C 0.11 2.23 6.73 -3.53 -0.02 2.21 16 23 C 0.05 0.79 6.60 37.31 0.25 1.04 16 24 O -0.38 -7.08 9.97 -35.23 -0.35 -7.43 16 25 N -0.41 -5.02 3.16 -115.62 -0.37 -5.39 16 26 C 0.06 0.65 10.15 59.84 0.61 1.26 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.37 7.75 -51.93 -0.40 -0.04 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.14 1.48 7.45 -52.49 -0.39 1.09 16 32 H 0.40 5.54 6.11 -40.82 -0.25 5.29 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.04 0.62 6.88 -51.93 -0.36 0.26 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.38 6.11 -51.93 -0.32 1.06 16 38 H 0.10 2.48 6.23 -51.93 -0.32 2.15 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 43 H 0.05 0.80 6.25 -51.93 -0.32 0.47 16 44 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.08 0.57 7.78 -51.93 -0.40 0.16 16 47 H 0.11 1.30 6.24 -51.93 -0.32 0.97 16 LS Contribution 371.90 15.07 5.60 5.60 Total: -1.00 -31.70 371.90 -8.40 -40.10 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -7.28 Total: 6.28 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -0.92 Total: 5.74 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -0.51 Total: -56.24 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.28 Total: -17.70 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.70 -8.40 -40.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107735469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.637 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds