Wall clock time and date at job start Fri Apr 10 2020 18:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35447 * 125.56448 * 2 1 4 4 C 1.39837 * 107.86502 * 180.02562 * 3 2 1 5 5 C 1.37870 * 107.08149 * 359.97438 * 4 3 2 6 6 C 1.46679 * 126.22921 * 179.97438 * 5 4 3 7 7 O 1.21696 * 120.00178 * 174.73865 * 6 5 4 8 8 N 1.34774 * 120.00086 * 354.74811 * 6 5 4 9 9 C 1.46507 * 119.99993 * 184.76966 * 8 6 5 10 10 C 1.53003 * 109.46981 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.55385 * 60.12841 * 10 9 8 12 12 C 1.53294 * 109.51163 * 180.25744 * 10 9 8 13 13 N 1.47227 * 108.40565 * 172.22888 * 12 10 9 14 14 C 1.36931 * 121.03027 * 129.46062 * 13 12 10 15 15 H 1.08001 * 119.99866 * 210.27069 * 14 13 12 16 16 C 1.38821 * 120.00205 * 30.27339 * 14 13 12 17 17 N 1.31610 * 119.99896 * 10.16067 * 16 14 13 18 18 Si 1.86801 * 119.99785 * 190.16396 * 16 14 13 19 19 H 1.48498 * 109.47392 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47332 * 119.99918 * 18 16 14 21 21 H 1.48504 * 109.46831 * 239.99860 * 18 16 14 22 22 C 1.47148 * 117.98755 * 309.48042 * 13 12 10 23 23 C 1.53301 * 108.41196 * 50.52035 * 22 13 12 24 24 O 1.42960 * 109.51077 * 299.99779 * 10 9 8 25 25 N 1.35531 * 125.56148 * 180.35804 * 2 1 3 26 26 C 1.46496 * 125.67971 * 359.97438 * 25 2 1 27 27 H 1.08996 * 109.47050 * 89.97280 * 1 2 3 28 28 H 1.09001 * 109.47461 * 209.97494 * 1 2 3 29 29 H 1.08999 * 109.47063 * 329.97851 * 1 2 3 30 30 H 1.07998 * 126.06610 * 0.06613 * 3 2 1 31 31 H 1.07997 * 126.45700 * 179.97438 * 4 3 2 32 32 H 0.96998 * 120.00275 * 4.76957 * 8 6 5 33 33 H 1.09003 * 109.46589 * 59.99922 * 9 8 6 34 34 H 1.08998 * 109.46751 * 300.00049 * 9 8 6 35 35 H 1.09005 * 109.47013 * 299.86754 * 11 10 9 36 36 H 1.08994 * 109.47631 * 59.87512 * 11 10 9 37 37 H 1.09005 * 109.46630 * 179.87503 * 11 10 9 38 38 H 1.09005 * 109.67922 * 291.94628 * 12 10 9 39 39 H 1.09006 * 109.68553 * 52.49466 * 12 10 9 40 40 H 0.96995 * 120.00040 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.68270 * 290.78303 * 22 13 12 42 42 H 1.08993 * 109.68119 * 170.26012 * 22 13 12 43 43 H 1.08997 * 109.51385 * 67.60884 * 23 22 13 44 44 H 1.09002 * 109.50882 * 187.70807 * 23 22 13 45 45 H 1.09003 * 109.47761 * 273.91076 * 26 25 2 46 46 H 1.09006 * 109.47414 * 33.91527 * 26 25 2 47 47 H 1.09005 * 109.47409 * 153.91435 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6767 -0.0006 5 6 3.6121 -0.7019 -0.0004 6 6 4.7859 -1.5816 -0.0013 7 8 4.6436 -2.7863 0.0956 8 7 6.0221 -1.0556 -0.1094 9 6 7.1868 -1.9379 -0.2156 10 6 8.4580 -1.0934 -0.3252 11 6 8.5991 -0.2164 0.9205 12 6 9.6768 -2.0157 -0.4428 13 7 10.8593 -1.1884 -0.7341 14 6 12.0067 -1.3127 0.0029 15 1 12.6526 -0.4589 0.1446 16 6 12.3396 -2.5363 0.5678 17 7 11.6689 -3.6188 0.2356 18 14 13.7396 -2.6462 1.7997 19 1 14.3290 -1.2981 2.0008 20 1 13.2214 -3.1584 3.0937 21 1 14.7818 -3.5696 1.2835 22 6 10.7711 -0.2232 -1.8413 23 6 9.4989 0.6118 -1.6555 24 8 8.3816 -0.2640 -1.4871 25 7 2.2953 -1.1025 -0.0069 26 6 1.8242 -2.4896 -0.0150 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 1.9545 2.1268 0.0010 31 1 4.5025 1.3091 -0.0011 32 1 6.1406 -0.0929 -0.1169 33 1 7.0885 -2.5641 -1.1024 34 1 7.2460 -2.5697 0.6706 35 1 7.7343 0.4423 1.0010 36 1 8.6573 -0.8494 1.8059 37 1 9.5062 0.3829 0.8420 38 1 9.8249 -2.5498 0.4958 39 1 9.5202 -2.7298 -1.2514 40 1 11.9013 -4.4737 0.6306 41 1 10.7246 -0.7567 -2.7907 42 1 11.6437 0.4298 -1.8294 43 1 9.6032 1.2428 -0.7730 44 1 9.3427 1.2376 -2.5342 45 1 1.6413 -2.8174 1.0083 46 1 0.8995 -2.5560 -0.5885 47 1 2.5811 -3.1278 -0.4710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107735469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:13 Heat of formation + Delta-G solvation = -28.773378 kcal Electronic energy + Delta-G solvation = -27915.995600 eV Core-core repulsion = 24099.664872 eV Total energy + Delta-G solvation = -3816.330728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.42451 -40.92744 -39.82916 -36.56176 -35.96933 -34.00532 -33.23498 -33.16200 -32.38276 -29.57988 -28.58703 -27.89537 -27.40226 -26.33727 -24.96754 -23.30385 -22.67559 -21.24983 -20.48714 -20.01872 -19.01634 -18.68826 -17.46407 -17.10011 -16.86249 -16.67796 -16.28917 -15.99367 -15.66868 -15.54069 -15.29684 -15.22602 -14.70415 -14.57478 -14.34607 -14.09834 -14.00225 -13.92820 -13.55961 -13.42031 -13.17146 -12.93256 -12.91750 -12.84533 -12.80766 -12.61172 -12.53788 -12.41502 -12.10183 -11.96310 -11.86604 -11.21367 -11.04110 -10.72271 -10.52715 -10.20936 -9.69049 -8.99083 -8.65908 -7.88814 -5.41509 0.45634 1.45202 1.47090 1.57108 1.62920 1.76906 2.33748 2.38198 2.48714 2.79743 3.27247 3.50639 3.74417 3.92896 3.95012 3.96390 4.02532 4.11760 4.29172 4.33888 4.43195 4.47669 4.53527 4.56804 4.62938 4.65609 4.72319 4.76500 4.79376 4.82410 4.97508 5.06343 5.11729 5.13008 5.19044 5.21601 5.26055 5.32903 5.36250 5.55831 5.61760 5.88615 6.02173 6.31896 6.32703 6.38535 6.51803 7.08400 7.13908 7.75716 8.31740 9.16509 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.024022 B = 0.002836 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.310498 B = 9871.802365 C =10431.572928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.044 3.956 3 C -0.219 4.219 4 C -0.132 4.132 5 C -0.089 4.089 6 C 0.581 3.419 7 O -0.592 6.592 8 N -0.694 5.694 9 C 0.154 3.846 10 C 0.094 3.906 11 C -0.153 4.153 12 C 0.170 3.830 13 N -0.607 5.607 14 C -0.257 4.257 15 H 0.073 0.927 16 C -0.049 4.049 17 N -0.938 5.938 18 Si 0.969 3.031 19 H -0.263 1.263 20 H -0.291 1.291 21 H -0.294 1.294 22 C 0.102 3.898 23 C 0.052 3.948 24 O -0.385 6.385 25 N -0.418 5.418 26 C 0.063 3.937 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.166 0.834 31 H 0.159 0.841 32 H 0.414 0.586 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.067 0.933 39 H -0.007 1.007 40 H 0.250 0.750 41 H 0.012 0.988 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.118 0.882 45 H 0.080 0.920 46 H 0.110 0.890 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.637 11.671 -0.124 24.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C -0.242 4.242 4 C -0.158 4.158 5 C -0.202 4.202 6 C 0.371 3.629 7 O -0.475 6.475 8 N -0.345 5.345 9 C 0.029 3.971 10 C 0.053 3.947 11 C -0.210 4.210 12 C 0.043 3.957 13 N -0.331 5.331 14 C -0.387 4.387 15 H 0.091 0.909 16 C -0.245 4.245 17 N -0.584 5.584 18 Si 0.797 3.203 19 H -0.187 1.187 20 H -0.218 1.218 21 H -0.221 1.221 22 C -0.023 4.023 23 C -0.025 4.025 24 O -0.305 6.305 25 N -0.092 5.092 26 C -0.077 4.077 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.184 0.816 31 H 0.176 0.824 32 H 0.252 0.748 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.011 0.989 40 H 0.059 0.941 41 H 0.030 0.970 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.136 0.864 45 H 0.099 0.901 46 H 0.129 0.871 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.896 10.288 -0.158 24.193 hybrid contribution 1.628 -0.582 0.568 1.820 sum -20.268 9.706 0.410 22.476 Atomic orbital electron populations 1.20531 0.84925 1.04801 1.04047 1.21293 0.95534 0.85209 1.05282 1.20979 0.91830 0.99060 1.12357 1.21672 0.99330 0.91309 1.03531 1.19897 0.84389 0.94066 1.21811 1.17357 0.83067 0.86660 0.75783 1.90744 1.86833 1.16588 1.53329 1.45403 1.04424 1.11163 1.73488 1.21062 0.82587 0.91945 1.01519 1.22194 0.94073 0.91789 0.86649 1.22110 1.02484 1.00050 0.96394 1.21040 0.84534 0.90835 0.99268 1.44211 1.10487 1.43983 1.34461 1.19525 1.00051 0.93783 1.25379 0.90940 1.25935 1.00804 0.94941 1.02792 1.70136 1.43875 0.98582 1.45757 0.85184 0.78890 0.77926 0.78325 1.18667 1.21771 1.22147 1.21825 0.98156 0.92423 0.89942 1.23121 0.85552 0.91459 1.02382 1.87830 1.43610 1.54301 1.44740 1.43987 1.04362 1.07582 1.53284 1.22306 1.02194 0.78953 1.04290 0.89468 0.90714 0.88056 0.81627 0.82366 0.74781 0.92584 0.90827 0.90580 0.92631 0.91818 0.91507 0.98931 0.94071 0.97014 0.90922 0.92060 0.86434 0.90138 0.87127 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 9.88 71.24 0.70 -0.08 16 2 C 0.04 0.81 6.87 41.34 0.28 1.09 16 3 C -0.22 -4.05 10.71 22.01 0.24 -3.81 16 4 C -0.13 -2.92 10.35 22.57 0.23 -2.69 16 5 C -0.09 -2.45 6.88 40.35 0.28 -2.17 16 6 C 0.58 19.05 7.77 86.45 0.67 19.72 16 7 O -0.59 -23.04 14.67 -4.34 -0.06 -23.10 16 8 N -0.69 -21.17 5.14 -467.06 -2.40 -23.57 16 9 C 0.15 5.55 4.82 86.38 0.42 5.96 16 10 C 0.09 3.53 0.76 -10.70 -0.01 3.53 16 11 C -0.15 -5.09 7.92 71.98 0.57 -4.52 16 12 C 0.17 8.25 4.06 86.34 0.35 8.61 16 13 N -0.61 -29.93 2.56 -697.34 -1.78 -31.72 16 14 C -0.26 -13.74 9.64 84.04 0.81 -12.93 16 15 H 0.07 3.72 7.85 -2.91 -0.02 3.70 16 16 C -0.05 -2.72 5.08 84.87 0.43 -2.29 16 17 N -0.94 -55.42 11.03 21.65 0.24 -55.18 16 18 Si 0.97 44.34 29.57 68.60 2.03 46.36 16 19 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 22 C 0.10 4.11 6.73 86.36 0.58 4.69 16 23 C 0.05 1.67 6.60 72.08 0.48 2.14 16 24 O -0.39 -13.73 9.97 -148.98 -1.49 -15.22 16 25 N -0.42 -9.75 3.16 -519.71 -1.64 -11.39 16 26 C 0.06 1.24 10.15 127.77 1.30 2.54 16 27 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.57 7.75 -2.39 -0.02 0.55 16 29 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 31 H 0.16 2.84 7.45 -2.91 -0.02 2.82 16 32 H 0.41 10.72 6.11 -92.71 -0.57 10.16 16 33 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.08 2.02 6.88 -2.38 -0.02 2.00 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.06 2.27 6.11 -2.38 -0.01 2.26 16 38 H 0.07 3.63 6.23 -2.38 -0.01 3.62 16 39 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 40 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 41 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 42 H 0.07 2.73 7.96 -2.39 -0.02 2.71 16 43 H 0.06 1.85 6.25 -2.39 -0.01 1.83 16 44 H 0.12 2.94 8.14 -2.39 -0.02 2.93 16 45 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.11 1.37 7.78 -2.38 -0.02 1.35 16 47 H 0.08 2.01 6.24 -2.38 -0.01 2.00 16 Total: -1.00 -71.60 371.90 2.63 -68.97 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.41 Total: 25.06 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 7.33 Total: 19.78 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -5.59 Total: -121.86 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -1.55 Total: -38.32 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -71.60 2.63 -68.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107735469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.195 kcal (2) G-P(sol) polarization free energy of solvation -71.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds