Wall clock time and date at job start Fri Apr 10 2020 18:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35443 * 125.56852 * 2 1 4 4 C 1.39838 * 107.87126 * 179.97438 * 3 2 1 5 5 C 1.37878 * 107.07861 * 0.02562 * 4 3 2 6 6 C 1.46674 * 126.23063 * 179.97438 * 5 4 3 7 7 O 1.21696 * 119.99997 * 173.31185 * 6 5 4 8 8 N 1.34782 * 119.99892 * 353.31132 * 6 5 4 9 9 C 1.46505 * 119.99722 * 185.36282 * 8 6 5 10 10 C 1.53004 * 109.46936 * 180.02562 * 9 8 6 11 11 C 1.53006 * 109.50866 * 304.99756 * 10 9 8 12 12 C 1.53291 * 109.50988 * 184.90004 * 10 9 8 13 13 N 1.47151 * 108.38412 * 187.76928 * 12 10 9 14 14 C 1.36931 * 120.98669 * 230.51444 * 13 12 10 15 15 H 1.07999 * 120.00402 * 146.47480 * 14 13 12 16 16 C 1.38819 * 119.99727 * 326.47371 * 14 13 12 17 17 N 1.31618 * 119.99744 * 348.86000 * 16 14 13 18 18 Si 1.86801 * 120.00051 * 168.86429 * 16 14 13 19 19 H 1.48501 * 109.47192 * 89.99503 * 18 16 14 20 20 H 1.48490 * 109.47141 * 209.99801 * 18 16 14 21 21 H 1.48503 * 109.47094 * 329.99833 * 18 16 14 22 22 C 1.47155 * 118.03536 * 50.53402 * 13 12 10 23 23 C 1.53301 * 108.38419 * 309.46872 * 22 13 12 24 24 O 1.42957 * 109.26608 * 52.27417 * 23 22 13 25 25 N 1.35539 * 125.55908 * 179.97438 * 2 1 3 26 26 C 1.46497 * 125.68218 * 359.97438 * 25 2 1 27 27 H 1.08999 * 109.47420 * 90.02500 * 1 2 3 28 28 H 1.09002 * 109.47624 * 210.02415 * 1 2 3 29 29 H 1.09004 * 109.47054 * 330.02517 * 1 2 3 30 30 H 1.08004 * 126.06674 * 0.26804 * 3 2 1 31 31 H 1.07995 * 126.46472 * 179.97438 * 4 3 2 32 32 H 0.96995 * 119.99841 * 5.37077 * 8 6 5 33 33 H 1.09007 * 109.47137 * 300.00182 * 9 8 6 34 34 H 1.08997 * 109.47026 * 60.00185 * 9 8 6 35 35 H 1.09002 * 109.47010 * 60.00431 * 11 10 9 36 36 H 1.08996 * 109.46719 * 180.02562 * 11 10 9 37 37 H 1.09000 * 109.47075 * 300.00237 * 11 10 9 38 38 H 1.09001 * 109.68241 * 307.49312 * 12 10 9 39 39 H 1.09005 * 109.68492 * 68.01302 * 12 10 9 40 40 H 0.97001 * 119.99322 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.68062 * 69.18628 * 22 13 12 42 42 H 1.08999 * 109.68536 * 189.74236 * 22 13 12 43 43 H 1.08997 * 109.51248 * 172.22676 * 23 22 13 44 44 H 1.09006 * 109.50754 * 292.32383 * 23 22 13 45 45 H 1.09005 * 109.46882 * 268.57066 * 26 25 2 46 46 H 1.09006 * 109.47199 * 28.56341 * 26 25 2 47 47 H 1.08997 * 109.47691 * 148.57119 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2948 1.1017 0.0000 4 6 3.6270 0.6766 0.0006 5 6 3.6121 -0.7021 0.0004 6 6 4.7858 -1.5817 0.0003 7 8 4.6450 -2.7843 0.1228 8 7 6.0203 -1.0581 -0.1355 9 6 7.1822 -1.9427 -0.2537 10 6 8.4519 -1.1007 -0.3949 11 6 8.2974 -0.1367 -1.5729 12 6 9.6522 -2.0218 -0.6410 13 7 10.8787 -1.2106 -0.5861 14 6 11.8123 -1.2757 -1.5856 15 1 12.3779 -0.3958 -1.8545 16 6 12.0319 -2.4727 -2.2534 17 7 11.5118 -3.5896 -1.7903 18 14 13.0655 -2.4984 -3.8092 19 1 14.4898 -2.7225 -3.4536 20 1 12.5984 -3.5941 -4.6958 21 1 12.9301 -1.1988 -4.5149 22 6 11.0725 -0.3276 0.5750 23 6 9.8028 0.5109 0.7620 24 8 8.6671 -0.3562 0.8064 25 7 2.2952 -1.1026 0.0005 26 6 1.8240 -2.4898 0.0016 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 1.9545 2.1267 0.0041 31 1 4.5025 1.3089 0.0004 32 1 6.1395 -0.0957 -0.1549 33 1 7.2568 -2.5655 0.6378 34 1 7.0674 -2.5778 -1.1321 35 1 7.4448 0.5191 -1.3963 36 1 9.2024 0.4624 -1.6731 37 1 8.1351 -0.7051 -2.4887 38 1 9.6873 -2.7928 0.1286 39 1 9.5629 -2.4870 -1.6228 40 1 11.6656 -4.4260 -2.2568 41 1 11.2505 -0.9280 1.4672 42 1 11.9238 0.3297 0.3984 43 1 9.8702 1.0706 1.6949 44 1 9.6987 1.2048 -0.0722 45 1 1.7319 -2.8413 1.0293 46 1 0.8523 -2.5439 -0.4893 47 1 2.5372 -3.1163 -0.5340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107735470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:17 Heat of formation + Delta-G solvation = -8.943084 kcal Electronic energy + Delta-G solvation = -27902.883457 eV Core-core repulsion = 24087.412636 eV Total energy + Delta-G solvation = -3815.470822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.53162 -39.48642 -38.46427 -34.99665 -34.32646 -33.05269 -32.10737 -31.39225 -31.25902 -27.96586 -27.49536 -26.60367 -26.18509 -25.02548 -23.22733 -22.12089 -21.18261 -20.20218 -19.33122 -18.68053 -17.79454 -16.93533 -16.00971 -15.86337 -15.65678 -15.20347 -15.02261 -14.49797 -14.38545 -14.11313 -13.96778 -13.59889 -13.44050 -13.41362 -13.26264 -13.07715 -12.93444 -12.75490 -12.48107 -12.16150 -12.09036 -11.97872 -11.86267 -11.58859 -11.18001 -10.99319 -10.82993 -10.67913 -10.31833 -10.27582 -10.06872 -9.86797 -9.51530 -9.01104 -8.87789 -8.83735 -8.56411 -8.11475 -6.64117 -5.85871 -3.37068 1.44802 2.55245 2.60031 3.32356 3.39670 3.40889 3.46790 3.49765 4.26144 4.42275 4.59373 4.65138 4.83175 4.93376 5.09399 5.15495 5.22517 5.31352 5.33606 5.39477 5.45977 5.48505 5.54023 5.58179 5.68547 5.93380 5.95081 5.97749 6.00553 6.05934 6.11129 6.15781 6.32246 6.46603 6.57684 6.66228 6.74117 6.77336 6.84463 6.90495 7.05124 7.10021 7.44488 7.68880 7.71863 7.89052 8.33894 8.37395 9.11059 9.71713 10.33389 11.21993 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.022076 B = 0.002853 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.036208 B = 9810.823459 C =10288.789945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.035 3.965 3 C -0.206 4.206 4 C -0.140 4.140 5 C -0.046 4.046 6 C 0.584 3.416 7 O -0.555 6.555 8 N -0.704 5.704 9 C 0.142 3.858 10 C 0.078 3.922 11 C -0.162 4.162 12 C 0.164 3.836 13 N -0.589 5.589 14 C -0.258 4.258 15 H 0.064 0.936 16 C 0.010 3.990 17 N -0.900 5.900 18 Si 0.904 3.096 19 H -0.286 1.286 20 H -0.289 1.289 21 H -0.278 1.278 22 C 0.109 3.891 23 C 0.046 3.954 24 O -0.383 6.383 25 N -0.408 5.408 26 C 0.068 3.932 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.404 0.596 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.031 0.969 39 H 0.088 0.912 40 H 0.256 0.744 41 H 0.025 0.975 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.048 0.952 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.492 8.500 3.065 21.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.230 4.230 4 C -0.166 4.166 5 C -0.159 4.159 6 C 0.371 3.629 7 O -0.436 6.436 8 N -0.355 5.355 9 C 0.018 3.982 10 C 0.037 3.963 11 C -0.220 4.220 12 C 0.037 3.963 13 N -0.313 5.313 14 C -0.388 4.388 15 H 0.082 0.918 16 C -0.190 4.190 17 N -0.543 5.543 18 Si 0.733 3.267 19 H -0.212 1.212 20 H -0.215 1.215 21 H -0.204 1.204 22 C -0.017 4.017 23 C -0.032 4.032 24 O -0.303 6.303 25 N -0.082 5.082 26 C -0.073 4.073 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.158 0.842 31 H 0.161 0.839 32 H 0.240 0.760 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.049 0.951 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.741 7.044 3.209 21.204 hybrid contribution 0.896 0.358 -0.958 1.360 sum -18.845 7.402 2.251 20.372 Atomic orbital electron populations 1.20362 0.87902 1.03355 1.02739 1.20530 0.93694 0.85907 1.08075 1.20584 0.92467 0.97657 1.12247 1.21344 0.97874 0.92024 1.05390 1.20097 0.84299 0.93635 1.17913 1.16984 0.82404 0.86752 0.76751 1.90779 1.86398 1.15141 1.51255 1.45677 1.05426 1.11080 1.73361 1.21382 0.81881 0.92018 1.02886 1.22552 0.95583 0.93214 0.84976 1.22212 1.01545 0.99852 0.98372 1.21206 0.82282 0.90562 1.02208 1.43896 1.18720 1.48836 1.19819 1.19079 1.15725 0.93688 1.10304 0.91796 1.25253 0.98689 0.95104 0.99964 1.69975 1.47327 0.97798 1.39196 0.86293 0.80165 0.77322 0.82937 1.21229 1.21488 1.20365 1.21623 0.95189 0.93578 0.91346 1.23044 0.87404 0.92333 1.00435 1.87830 1.47398 1.58433 1.36604 1.43743 1.04668 1.06539 1.53233 1.22204 1.01351 0.79799 1.03976 0.90866 0.91704 0.89907 0.84158 0.83864 0.75977 0.90603 0.89952 0.93881 0.90755 0.91856 0.95071 0.89374 0.93390 0.95658 0.92039 0.90188 0.93405 0.90607 0.90199 0.88017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 9.83 36.00 0.35 -0.20 16 2 C 0.03 0.36 6.87 -81.96 -0.56 -0.20 16 3 C -0.21 -2.20 10.71 -39.98 -0.43 -2.63 16 4 C -0.14 -1.69 10.36 -39.12 -0.41 -2.09 16 5 C -0.05 -0.64 6.88 -81.98 -0.56 -1.21 16 6 C 0.58 9.38 7.76 -12.85 -0.10 9.28 16 7 O -0.56 -10.33 14.81 5.19 0.08 -10.26 16 8 N -0.70 -10.73 5.18 -61.61 -0.32 -11.05 16 9 C 0.14 2.46 4.86 -4.04 -0.02 2.44 16 10 C 0.08 1.45 0.78 -90.46 -0.07 1.38 16 11 C -0.16 -2.75 7.87 37.16 0.29 -2.46 16 12 C 0.16 3.80 4.03 -3.54 -0.01 3.79 16 13 N -0.59 -14.31 2.54 -171.82 -0.44 -14.75 16 14 C -0.26 -6.85 9.60 -15.06 -0.14 -6.99 16 15 H 0.06 1.66 7.85 -52.49 -0.41 1.25 16 16 C 0.01 0.26 5.04 -17.43 -0.09 0.17 16 17 N -0.90 -25.60 11.34 55.49 0.63 -24.97 16 18 Si 0.90 21.18 29.57 -169.99 -5.03 16.15 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.11 2.25 6.74 -3.53 -0.02 2.22 16 23 C 0.05 0.79 6.60 37.31 0.25 1.04 16 24 O -0.38 -7.12 10.17 -35.23 -0.36 -7.48 16 25 N -0.41 -4.99 3.16 -115.62 -0.37 -5.36 16 26 C 0.07 0.68 10.09 59.85 0.60 1.29 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.36 7.61 -51.93 -0.40 -0.03 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 31 H 0.14 1.47 7.46 -52.49 -0.39 1.07 16 32 H 0.40 5.49 5.90 -40.82 -0.24 5.25 16 33 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.04 0.61 6.58 -51.93 -0.34 0.27 16 36 H 0.07 1.37 6.12 -51.93 -0.32 1.06 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 2.24 6.53 -51.93 -0.34 1.90 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.05 0.80 6.26 -51.93 -0.33 0.47 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.08 0.56 7.51 -51.93 -0.39 0.17 16 47 H 0.10 1.21 6.56 -51.93 -0.34 0.87 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -31.88 372.07 -8.39 -40.27 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -7.27 Total: 6.01 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -0.92 Total: 5.82 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.49 Total: -56.12 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.28 Total: -17.74 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.88 -8.39 -40.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107735470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.325 kcal (2) G-P(sol) polarization free energy of solvation -31.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds