Wall clock time and date at job start Fri Apr 10 2020 18:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35443 * 125.56852 * 2 1 4 4 C 1.39838 * 107.87126 * 179.97438 * 3 2 1 5 5 C 1.37878 * 107.07861 * 0.02562 * 4 3 2 6 6 C 1.46674 * 126.23063 * 179.97438 * 5 4 3 7 7 O 1.21696 * 119.99997 * 173.31185 * 6 5 4 8 8 N 1.34782 * 119.99892 * 353.31132 * 6 5 4 9 9 C 1.46505 * 119.99722 * 185.36282 * 8 6 5 10 10 C 1.53004 * 109.46936 * 180.02562 * 9 8 6 11 11 C 1.53006 * 109.50866 * 304.99756 * 10 9 8 12 12 C 1.53291 * 109.50988 * 184.90004 * 10 9 8 13 13 N 1.47151 * 108.38412 * 187.76928 * 12 10 9 14 14 C 1.36931 * 120.98669 * 230.51444 * 13 12 10 15 15 H 1.07999 * 120.00402 * 146.47480 * 14 13 12 16 16 C 1.38819 * 119.99727 * 326.47371 * 14 13 12 17 17 N 1.31618 * 119.99744 * 348.86000 * 16 14 13 18 18 Si 1.86801 * 120.00051 * 168.86429 * 16 14 13 19 19 H 1.48501 * 109.47192 * 89.99503 * 18 16 14 20 20 H 1.48490 * 109.47141 * 209.99801 * 18 16 14 21 21 H 1.48503 * 109.47094 * 329.99833 * 18 16 14 22 22 C 1.47155 * 118.03536 * 50.53402 * 13 12 10 23 23 C 1.53301 * 108.38419 * 309.46872 * 22 13 12 24 24 O 1.42957 * 109.26608 * 52.27417 * 23 22 13 25 25 N 1.35539 * 125.55908 * 179.97438 * 2 1 3 26 26 C 1.46497 * 125.68218 * 359.97438 * 25 2 1 27 27 H 1.08999 * 109.47420 * 90.02500 * 1 2 3 28 28 H 1.09002 * 109.47624 * 210.02415 * 1 2 3 29 29 H 1.09004 * 109.47054 * 330.02517 * 1 2 3 30 30 H 1.08004 * 126.06674 * 0.26804 * 3 2 1 31 31 H 1.07995 * 126.46472 * 179.97438 * 4 3 2 32 32 H 0.96995 * 119.99841 * 5.37077 * 8 6 5 33 33 H 1.09007 * 109.47137 * 300.00182 * 9 8 6 34 34 H 1.08997 * 109.47026 * 60.00185 * 9 8 6 35 35 H 1.09002 * 109.47010 * 60.00431 * 11 10 9 36 36 H 1.08996 * 109.46719 * 180.02562 * 11 10 9 37 37 H 1.09000 * 109.47075 * 300.00237 * 11 10 9 38 38 H 1.09001 * 109.68241 * 307.49312 * 12 10 9 39 39 H 1.09005 * 109.68492 * 68.01302 * 12 10 9 40 40 H 0.97001 * 119.99322 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.68062 * 69.18628 * 22 13 12 42 42 H 1.08999 * 109.68536 * 189.74236 * 22 13 12 43 43 H 1.08997 * 109.51248 * 172.22676 * 23 22 13 44 44 H 1.09006 * 109.50754 * 292.32383 * 23 22 13 45 45 H 1.09005 * 109.46882 * 268.57066 * 26 25 2 46 46 H 1.09006 * 109.47199 * 28.56341 * 26 25 2 47 47 H 1.08997 * 109.47691 * 148.57119 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2948 1.1017 0.0000 4 6 3.6270 0.6766 0.0006 5 6 3.6121 -0.7021 0.0004 6 6 4.7858 -1.5817 0.0003 7 8 4.6450 -2.7843 0.1228 8 7 6.0203 -1.0581 -0.1355 9 6 7.1822 -1.9427 -0.2537 10 6 8.4519 -1.1007 -0.3949 11 6 8.2974 -0.1367 -1.5729 12 6 9.6522 -2.0218 -0.6410 13 7 10.8787 -1.2106 -0.5861 14 6 11.8123 -1.2757 -1.5856 15 1 12.3779 -0.3958 -1.8545 16 6 12.0319 -2.4727 -2.2534 17 7 11.5118 -3.5896 -1.7903 18 14 13.0655 -2.4984 -3.8092 19 1 14.4898 -2.7225 -3.4536 20 1 12.5984 -3.5941 -4.6958 21 1 12.9301 -1.1988 -4.5149 22 6 11.0725 -0.3276 0.5750 23 6 9.8028 0.5109 0.7620 24 8 8.6671 -0.3562 0.8064 25 7 2.2952 -1.1026 0.0005 26 6 1.8240 -2.4898 0.0016 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 1.9545 2.1267 0.0041 31 1 4.5025 1.3089 0.0004 32 1 6.1395 -0.0957 -0.1549 33 1 7.2568 -2.5655 0.6378 34 1 7.0674 -2.5778 -1.1321 35 1 7.4448 0.5191 -1.3963 36 1 9.2024 0.4624 -1.6731 37 1 8.1351 -0.7051 -2.4887 38 1 9.6873 -2.7928 0.1286 39 1 9.5629 -2.4870 -1.6228 40 1 11.6656 -4.4260 -2.2568 41 1 11.2505 -0.9280 1.4672 42 1 11.9238 0.3297 0.3984 43 1 9.8702 1.0706 1.6949 44 1 9.6987 1.2048 -0.0722 45 1 1.7319 -2.8413 1.0293 46 1 0.8523 -2.5439 -0.4893 47 1 2.5372 -3.1163 -0.5340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107735470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:16 Heat of formation + Delta-G solvation = -29.484528 kcal Electronic energy + Delta-G solvation = -27903.774201 eV Core-core repulsion = 24087.412636 eV Total energy + Delta-G solvation = -3816.361566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.42657 -40.93779 -39.83051 -36.56115 -35.98346 -34.00460 -33.23733 -33.16921 -32.38300 -29.58954 -28.59995 -27.89174 -27.40625 -26.34560 -24.98483 -23.31566 -22.66586 -21.24469 -20.48274 -20.03153 -19.01961 -18.69487 -17.46471 -17.04530 -16.88109 -16.71720 -16.30848 -16.01977 -15.68127 -15.54080 -15.31207 -15.22376 -14.72388 -14.53205 -14.37245 -14.09802 -13.97252 -13.90570 -13.55691 -13.46557 -13.18017 -12.94569 -12.92080 -12.83217 -12.77551 -12.61163 -12.54237 -12.43962 -12.16836 -11.96870 -11.88678 -11.20601 -11.05214 -10.71324 -10.52724 -10.21491 -9.69476 -8.99379 -8.62213 -7.90047 -5.45266 0.45421 1.45640 1.46931 1.56297 1.62953 1.76399 2.35130 2.35875 2.48239 2.79315 3.26095 3.50311 3.73228 3.92416 3.94914 3.96387 4.02567 4.10099 4.28947 4.33442 4.42883 4.46978 4.53047 4.54919 4.62928 4.65007 4.72488 4.75848 4.78831 4.82488 4.96807 5.04416 5.11491 5.12677 5.18671 5.20297 5.25802 5.32513 5.35130 5.52269 5.61992 5.88286 6.01748 6.32293 6.33225 6.38003 6.50994 7.08222 7.13413 7.74530 8.32956 9.15314 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.022076 B = 0.002853 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.036208 B = 9810.823459 C =10288.789945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.045 3.955 3 C -0.219 4.219 4 C -0.132 4.132 5 C -0.089 4.089 6 C 0.581 3.419 7 O -0.591 6.591 8 N -0.695 5.695 9 C 0.153 3.847 10 C 0.094 3.906 11 C -0.153 4.153 12 C 0.173 3.827 13 N -0.605 5.605 14 C -0.263 4.263 15 H 0.071 0.929 16 C -0.045 4.045 17 N -0.936 5.936 18 Si 0.968 3.032 19 H -0.285 1.285 20 H -0.295 1.295 21 H -0.265 1.265 22 C 0.102 3.898 23 C 0.052 3.948 24 O -0.386 6.386 25 N -0.418 5.418 26 C 0.067 3.933 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.166 0.834 31 H 0.159 0.841 32 H 0.414 0.586 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.056 0.944 38 H -0.007 1.007 39 H 0.059 0.941 40 H 0.251 0.749 41 H 0.010 0.990 42 H 0.072 0.928 43 H 0.117 0.883 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.113 0.887 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.520 11.568 2.837 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C -0.242 4.242 4 C -0.159 4.159 5 C -0.202 4.202 6 C 0.371 3.629 7 O -0.475 6.475 8 N -0.346 5.346 9 C 0.028 3.972 10 C 0.053 3.947 11 C -0.211 4.211 12 C 0.046 3.954 13 N -0.330 5.330 14 C -0.393 4.393 15 H 0.088 0.912 16 C -0.241 4.241 17 N -0.581 5.581 18 Si 0.796 3.204 19 H -0.212 1.212 20 H -0.221 1.221 21 H -0.190 1.190 22 C -0.023 4.023 23 C -0.025 4.025 24 O -0.306 6.306 25 N -0.092 5.092 26 C -0.074 4.074 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.184 0.816 31 H 0.176 0.824 32 H 0.252 0.748 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.012 0.988 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.028 0.972 42 H 0.091 0.909 43 H 0.135 0.865 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.131 0.869 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.765 10.169 2.996 24.210 hybrid contribution 1.478 -0.547 -0.807 1.771 sum -20.287 9.622 2.189 22.560 Atomic orbital electron populations 1.20536 0.84918 1.04816 1.04073 1.21293 0.95532 0.85192 1.05261 1.20980 0.91829 0.99066 1.12341 1.21676 0.99337 0.91298 1.03554 1.19899 0.84376 0.94061 1.21816 1.17360 0.83072 0.86646 0.75796 1.90754 1.86894 1.16798 1.53014 1.45451 1.04638 1.11141 1.73411 1.21051 0.82542 0.91940 1.01658 1.22187 0.93713 0.92759 0.86055 1.22114 1.02405 0.99490 0.97051 1.20949 0.84359 0.90791 0.99266 1.44146 1.18863 1.49227 1.20740 1.19433 1.15530 0.93765 1.10565 0.91175 1.26018 1.00254 0.94835 1.02998 1.70149 1.49150 0.98185 1.40572 0.85275 0.78328 0.77450 0.79388 1.21156 1.22115 1.18964 1.21829 0.97808 0.93350 0.89336 1.23119 0.84844 0.91568 1.02967 1.87841 1.47792 1.58500 1.36439 1.43990 1.04372 1.07580 1.53304 1.22261 1.02141 0.78860 1.04158 0.89431 0.90689 0.88061 0.81622 0.82353 0.74775 0.92539 0.90761 0.90490 0.91802 0.92443 0.98847 0.92252 0.94020 0.97162 0.90928 0.86538 0.91978 0.90428 0.86852 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 9.83 71.23 0.70 -0.08 16 2 C 0.04 0.80 6.87 41.34 0.28 1.09 16 3 C -0.22 -4.01 10.71 22.01 0.24 -3.77 16 4 C -0.13 -2.90 10.36 22.57 0.23 -2.66 16 5 C -0.09 -2.43 6.88 40.35 0.28 -2.15 16 6 C 0.58 18.97 7.76 86.45 0.67 19.65 16 7 O -0.59 -23.02 14.81 -4.34 -0.06 -23.09 16 8 N -0.69 -21.08 5.18 -467.05 -2.42 -23.50 16 9 C 0.15 5.50 4.86 86.38 0.42 5.92 16 10 C 0.09 3.52 0.78 -10.69 -0.01 3.51 16 11 C -0.15 -5.02 7.87 71.98 0.57 -4.45 16 12 C 0.17 8.39 4.03 86.35 0.35 8.74 16 13 N -0.61 -29.92 2.54 -697.53 -1.77 -31.69 16 14 C -0.26 -14.06 9.60 84.04 0.81 -13.25 16 15 H 0.07 3.60 7.85 -2.91 -0.02 3.58 16 16 C -0.04 -2.48 5.04 84.86 0.43 -2.05 16 17 N -0.94 -55.43 11.34 21.65 0.25 -55.19 16 18 Si 0.97 44.17 29.57 68.60 2.03 46.19 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 22 C 0.10 4.16 6.74 86.36 0.58 4.74 16 23 C 0.05 1.69 6.60 72.08 0.48 2.17 16 24 O -0.39 -13.91 10.17 -148.98 -1.52 -15.43 16 25 N -0.42 -9.68 3.16 -519.72 -1.64 -11.32 16 26 C 0.07 1.29 10.09 127.77 1.29 2.58 16 27 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.56 7.61 -2.39 -0.02 0.54 16 29 H 0.10 0.58 8.14 -2.39 -0.02 0.57 16 30 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.16 2.80 7.46 -2.91 -0.02 2.78 16 32 H 0.41 10.60 5.90 -92.71 -0.55 10.05 16 33 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.08 1.99 6.58 -2.39 -0.02 1.97 16 36 H 0.06 2.25 6.12 -2.39 -0.01 2.24 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 39 H 0.06 3.19 6.53 -2.38 -0.02 3.18 16 40 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 41 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.07 2.76 7.96 -2.39 -0.02 2.74 16 43 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 44 H 0.06 1.88 6.26 -2.38 -0.01 1.86 16 45 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.11 1.34 7.51 -2.38 -0.02 1.32 16 47 H 0.08 1.89 6.56 -2.39 -0.02 1.88 16 Total: -1.00 -72.04 372.07 2.60 -69.44 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.43 Total: 24.61 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: 7.31 Total: 19.97 kcal Atomic # 7 Polarization: -116.12 SS G_CDS: -5.59 Total: -121.70 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -1.58 Total: -38.52 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -72.04 2.60 -69.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107735470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.953 kcal (2) G-P(sol) polarization free energy of solvation -72.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds